Wall clock time and date at job start Tue Mar 31 2020 06:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.47061 * 2 1 4 4 H 1.08991 * 109.47520 * 54.51733 * 3 2 1 5 5 C 1.50707 * 109.46959 * 174.52003 * 3 2 1 6 6 H 1.08004 * 119.99649 * 119.99929 * 5 3 2 7 7 C 1.37874 * 119.99906 * 299.71980 * 5 3 2 8 8 N 1.31514 * 120.00159 * 0.28209 * 7 5 3 9 9 Si 1.86793 * 120.00014 * 180.27814 * 7 5 3 10 10 H 1.48498 * 109.47314 * 90.00013 * 9 7 5 11 11 H 1.48504 * 109.47217 * 210.00134 * 9 7 5 12 12 H 1.48506 * 109.47267 * 329.99750 * 9 7 5 13 13 N 1.46902 * 109.46761 * 294.51701 * 3 2 1 14 14 C 1.46900 * 110.99889 * 154.43917 * 13 3 2 15 15 C 1.50695 * 109.47342 * 174.77324 * 14 13 3 16 16 C 1.34481 * 126.05406 * 94.70971 * 15 14 13 17 17 O 1.34899 * 107.33379 * 179.84263 * 16 15 14 18 18 C 1.34545 * 107.68286 * 0.42356 * 17 16 15 19 19 C 1.47011 * 125.76419 * 179.75491 * 18 17 16 20 20 C 1.36170 * 125.33645 * 359.97438 * 19 18 17 21 21 C 1.37724 * 114.44789 * 179.97438 * 20 19 18 22 22 C 1.33721 * 115.19323 * 359.97438 * 21 20 19 23 23 S 1.75831 * 109.95431 * 359.77134 * 22 21 20 24 24 N 1.31533 * 108.47091 * 359.73540 * 18 17 16 25 25 H 1.08999 * 109.47160 * 305.96381 * 1 2 3 26 26 H 1.08999 * 109.47072 * 65.96362 * 1 2 3 27 27 H 1.09002 * 109.47422 * 185.96225 * 1 2 3 28 28 H 1.08999 * 109.47606 * 239.99888 * 2 1 3 29 29 H 1.09005 * 109.47314 * 119.99514 * 2 1 3 30 30 H 0.97000 * 120.00200 * 180.02562 * 8 7 5 31 31 H 1.00895 * 110.99920 * 30.48247 * 13 3 2 32 32 H 1.09002 * 109.46730 * 294.77420 * 14 13 3 33 33 H 1.08998 * 109.47631 * 54.76794 * 14 13 3 34 34 H 1.07996 * 126.32929 * 359.96783 * 16 15 14 35 35 H 1.08004 * 122.77907 * 359.97438 * 20 19 18 36 36 H 1.07997 * 122.41123 * 179.97438 * 21 20 19 37 37 H 1.07992 * 125.02234 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5987 1.9840 0.8367 5 6 3.5409 1.4447 0.1357 6 1 4.1523 1.8871 -0.6369 7 6 4.1332 0.8870 1.2488 8 7 3.3887 0.3483 2.1896 9 14 5.9932 0.8966 1.4207 10 1 6.4193 2.1349 2.1209 11 1 6.4240 -0.2887 2.2049 12 1 6.6151 0.8511 0.0729 13 7 1.6613 2.0957 -1.2602 14 6 1.5681 3.5520 -1.0910 15 6 1.3050 4.1971 -2.4272 16 6 0.0994 4.5286 -2.9225 17 8 0.3017 5.0816 -4.1361 18 6 1.6261 5.0737 -4.3733 19 6 2.2848 5.5796 -5.5863 20 6 1.6486 6.1336 -6.6552 21 6 2.4863 6.5333 -7.6727 22 6 3.7881 6.3178 -7.4561 23 16 4.0188 5.5718 -5.8807 24 7 2.2319 4.5372 -3.3363 25 1 -0.3633 0.6035 0.8318 26 1 -0.3633 0.4186 -0.9385 27 1 -0.3634 -1.0221 0.1067 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 3.8054 -0.0438 2.9729 31 1 0.7972 1.7172 -1.6182 32 1 0.7524 3.7868 -0.4072 33 1 2.5049 3.9311 -0.6827 34 1 -0.8541 4.3812 -2.4373 35 1 0.5758 6.2500 -6.7013 36 1 2.1183 6.9880 -8.5805 37 1 4.5809 6.5682 -8.1453 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000569706925.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:39 Heat of formation + Delta-G solvation = 35.452280 kcal Electronic energy + Delta-G solvation = -20102.758355 eV Core-core repulsion = 16972.633586 eV Total energy + Delta-G solvation = -3130.124769 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -44.26125 -38.66054 -38.30995 -36.10237 -34.45570 -33.31864 -32.06775 -29.74388 -28.48530 -26.36623 -25.64769 -24.39245 -23.07932 -22.31217 -21.47368 -19.92480 -19.09295 -18.38844 -17.72350 -17.64532 -16.78867 -16.56603 -16.35046 -15.74856 -15.17437 -14.94978 -14.67200 -14.22720 -14.11167 -13.99221 -13.63638 -13.44000 -13.26524 -13.13080 -12.87034 -12.73192 -12.54231 -12.27886 -11.99113 -11.76425 -11.64476 -11.54476 -11.42382 -11.07390 -10.63736 -10.43777 -9.56574 -9.17844 -9.02033 -8.07814 -6.18945 -0.60128 0.31325 0.67665 1.01847 1.39234 1.40149 1.49542 1.52050 1.83006 1.97549 2.43790 2.84304 3.17056 3.61248 3.91941 3.99169 4.16616 4.30582 4.48896 4.51341 4.57286 4.58216 4.66252 4.75050 4.78949 4.85596 5.03932 5.09108 5.15480 5.25612 5.28148 5.37024 5.42880 5.58285 5.74119 5.88529 6.34164 6.46471 6.67444 6.93583 6.97432 7.49750 8.95035 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.017757 B = 0.003766 C = 0.003232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.471620 B = 7432.970345 C = 8662.436649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.120 4.120 3 C 0.228 3.772 4 H -0.021 1.021 5 C -0.514 4.514 6 H 0.040 0.960 7 C 0.014 3.986 8 N -0.916 5.916 9 Si 0.951 3.049 10 H -0.277 1.277 11 H -0.278 1.278 12 H -0.277 1.277 13 N -0.685 5.685 14 C 0.151 3.849 15 C -0.015 4.015 16 C -0.050 4.050 17 O -0.194 6.194 18 C 0.244 3.756 19 C -0.171 4.171 20 C -0.082 4.082 21 C -0.142 4.142 22 C -0.192 4.192 23 S 0.160 5.840 24 N -0.491 5.491 25 H 0.042 0.958 26 H 0.058 0.942 27 H 0.056 0.944 28 H 0.032 0.968 29 H 0.069 0.931 30 H 0.261 0.739 31 H 0.330 0.670 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.261 0.739 35 H 0.163 0.837 36 H 0.183 0.817 37 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.868 12.467 -18.431 23.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.159 4.159 3 C 0.120 3.880 4 H -0.004 1.004 5 C -0.553 4.553 6 H 0.059 0.941 7 C -0.185 4.185 8 N -0.556 5.556 9 Si 0.777 3.223 10 H -0.203 1.203 11 H -0.203 1.203 12 H -0.202 1.202 13 N -0.318 5.318 14 C 0.022 3.978 15 C -0.136 4.136 16 C -0.121 4.121 17 O -0.080 6.080 18 C 0.040 3.960 19 C -0.289 4.289 20 C -0.118 4.118 21 C -0.171 4.171 22 C -0.329 4.329 23 S 0.425 5.575 24 N -0.221 5.221 25 H 0.061 0.939 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.051 0.949 29 H 0.088 0.912 30 H 0.070 0.930 31 H 0.149 0.851 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.277 0.723 35 H 0.180 0.820 36 H 0.200 0.800 37 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -4.278 11.832 -17.626 21.656 hybrid contribution -1.565 0.306 0.448 1.656 sum -5.843 12.138 -17.178 21.830 Atomic orbital electron populations 1.21742 0.95821 1.01293 1.00709 1.21582 0.94595 0.98620 1.01093 1.18931 0.93857 0.90837 0.84343 1.00367 1.21452 0.93097 1.36743 1.03978 0.94146 1.25596 1.02062 0.95272 0.95537 1.69974 1.36076 1.39898 1.09695 0.85663 0.81137 0.77665 0.77795 1.20295 1.20337 1.20225 1.60436 1.37342 1.02212 1.31809 1.19931 1.00707 0.88497 0.88706 1.21833 0.89622 1.03851 0.98339 1.25579 1.01867 1.01017 0.83625 1.84518 1.26792 1.62876 1.33839 1.22809 0.78164 1.00087 0.94972 1.21589 0.98189 1.13911 0.95193 1.21026 1.02715 0.96881 0.91156 1.20327 0.91825 1.03590 1.01312 1.26518 1.02052 1.04730 0.99585 1.84907 1.00494 1.58215 1.13841 1.70721 1.34950 1.14849 1.01614 0.93912 0.92310 0.92450 0.94949 0.91222 0.92953 0.85097 0.92384 0.92533 0.72314 0.81975 0.79978 0.77874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.06 9.64 71.98 0.69 -4.36 16 2 C -0.12 -5.73 5.36 30.59 0.16 -5.56 16 3 C 0.23 11.68 2.02 44.17 0.09 11.77 16 4 H -0.02 -1.17 7.85 -2.39 -0.02 -1.19 16 5 C -0.51 -29.97 8.56 25.60 0.22 -29.75 16 6 H 0.04 2.48 7.81 -2.91 -0.02 2.46 16 7 C 0.01 0.78 5.29 84.65 0.45 1.23 16 8 N -0.92 -53.28 11.30 21.45 0.24 -53.04 16 9 Si 0.95 45.94 29.54 68.60 2.03 47.97 16 10 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 11 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 12 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 13 N -0.69 -30.28 6.26 -499.46 -3.12 -33.41 16 14 C 0.15 6.04 5.99 85.56 0.51 6.55 16 15 C -0.02 -0.55 6.65 41.33 0.27 -0.27 16 16 C -0.05 -1.33 12.08 66.96 0.81 -0.52 16 17 O -0.19 -5.53 10.79 -10.79 -0.12 -5.64 16 18 C 0.24 7.97 8.09 87.04 0.70 8.67 16 19 C -0.17 -4.53 6.46 24.09 0.16 -4.38 16 20 C -0.08 -1.55 10.15 21.67 0.22 -1.33 16 21 C -0.14 -1.89 10.15 21.12 0.21 -1.68 16 22 C -0.19 -2.73 11.21 66.79 0.75 -1.98 16 23 S 0.16 3.80 23.30 -56.49 -1.32 2.49 16 24 N -0.49 -19.20 11.33 -293.47 -3.33 -22.53 16 25 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 26 H 0.06 1.86 6.66 -2.39 -0.02 1.84 16 27 H 0.06 1.87 8.14 -2.39 -0.02 1.86 16 28 H 0.03 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.07 3.76 5.96 -2.38 -0.01 3.75 16 30 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 31 H 0.33 12.75 6.63 -89.70 -0.60 12.15 16 32 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.06 2.64 7.94 -2.39 -0.02 2.62 16 34 H 0.26 4.22 8.06 -2.91 -0.02 4.20 16 35 H 0.16 2.44 8.06 -2.91 -0.02 2.42 16 36 H 0.18 1.12 8.06 -2.91 -0.02 1.09 16 37 H 0.20 1.45 8.06 -2.91 -0.02 1.43 16 Total: -1.00 -71.84 331.43 0.13 -71.71 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: 0.49 Total: 14.07 kcal Atomic # 6 Polarization: -26.87 SS G_CDS: 5.25 Total: -21.62 kcal Atomic # 7 Polarization: -102.77 SS G_CDS: -6.21 Total: -108.97 kcal Atomic # 8 Polarization: -5.53 SS G_CDS: -0.12 Total: -5.64 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.97 kcal Atomic # 16 Polarization: 3.80 SS G_CDS: -1.32 Total: 2.49 kcal Total: -71.84 0.13 -71.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569706925.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.164 kcal (2) G-P(sol) polarization free energy of solvation -71.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds