Wall clock time and date at job start Tue Mar 31 2020 06:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47219 * 2 1 4 4 H 1.08998 * 109.47024 * 174.09054 * 3 2 1 5 5 C 1.50699 * 109.46972 * 54.09123 * 3 2 1 6 6 H 1.08007 * 119.99538 * 240.00177 * 5 3 2 7 7 C 1.37874 * 120.00017 * 60.00138 * 5 3 2 8 8 N 1.31514 * 120.00251 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99682 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47115 * 89.99729 * 9 7 5 11 11 H 1.48503 * 109.46912 * 209.99457 * 9 7 5 12 12 H 1.48497 * 109.47587 * 329.99941 * 9 7 5 13 13 N 1.46897 * 109.47004 * 294.08696 * 3 2 1 14 14 C 1.46896 * 111.00371 * 275.78009 * 13 3 2 15 15 C 1.50698 * 109.47396 * 176.21361 * 14 13 3 16 16 C 1.34479 * 126.05526 * 94.99696 * 15 14 13 17 17 O 1.34902 * 107.33467 * 179.75968 * 16 15 14 18 18 C 1.34543 * 107.67938 * 0.23792 * 17 16 15 19 19 C 1.47013 * 125.76077 * 179.97438 * 18 17 16 20 20 C 1.36178 * 125.33382 * 0.03663 * 19 18 17 21 21 C 1.37737 * 114.44222 * 179.97438 * 20 19 18 22 22 C 1.33716 * 115.19205 * 359.97438 * 21 20 19 23 23 S 1.75830 * 109.96133 * 359.73523 * 22 21 20 24 24 N 1.31518 * 108.47564 * 0.02562 * 18 17 16 25 25 H 1.08997 * 109.47198 * 178.55693 * 1 2 3 26 26 H 1.08999 * 109.46954 * 298.56133 * 1 2 3 27 27 H 1.09001 * 109.46704 * 58.55653 * 1 2 3 28 28 H 1.09002 * 109.47041 * 240.00333 * 2 1 3 29 29 H 1.09000 * 109.47315 * 120.00224 * 2 1 3 30 30 H 0.96997 * 119.99782 * 180.02562 * 8 7 5 31 31 H 1.00903 * 110.99880 * 39.73390 * 13 3 2 32 32 H 1.08995 * 109.47194 * 56.21099 * 14 13 3 33 33 H 1.09001 * 109.47060 * 296.21083 * 14 13 3 34 34 H 1.08003 * 126.33089 * 0.02562 * 16 15 14 35 35 H 1.07997 * 122.77989 * 0.02562 * 20 19 18 36 36 H 1.08001 * 122.39957 * 179.97438 * 21 20 19 37 37 H 1.08001 * 125.01446 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1249 1.4443 0.1058 5 6 1.4218 2.1939 1.1508 6 1 0.8149 3.0670 0.9617 7 6 1.6310 1.7666 2.4449 8 7 2.3696 0.7031 2.6750 9 14 0.8641 2.6976 3.8712 10 1 -0.4779 2.1341 4.1657 11 1 1.7300 2.5666 5.0705 12 1 0.7304 4.1321 3.5114 13 7 1.6703 2.0926 -1.2644 14 6 2.6510 1.7938 -2.3164 15 6 2.1915 2.3985 -3.6180 16 6 2.5592 3.5956 -4.1082 17 8 1.9312 3.7556 -5.2913 18 6 1.1833 2.6585 -5.5086 19 6 0.3337 2.4168 -6.6838 20 6 0.1778 3.2718 -7.7322 21 6 -0.6735 2.8185 -8.7155 22 6 -1.2126 1.6155 -8.4916 23 16 -0.6333 0.9738 -6.9605 24 7 1.3397 1.8393 -4.4916 25 1 -0.3633 -1.0273 -0.0259 26 1 -0.3633 0.4913 0.9026 27 1 -0.3633 0.5361 -0.8768 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 2.5165 0.4024 3.5854 31 1 0.7405 1.8247 -1.5503 32 1 2.7441 0.7139 -2.4303 33 1 3.6182 2.2149 -2.0417 34 1 3.2360 4.2970 -3.6429 35 1 0.6806 4.2259 -7.7883 36 1 -0.8900 3.3936 -9.6037 37 1 -1.8991 1.1108 -9.1552 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000569706926.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:41 Heat of formation + Delta-G solvation = 57.280560 kcal Electronic energy + Delta-G solvation = -20152.814844 eV Core-core repulsion = 17023.636620 eV Total energy + Delta-G solvation = -3129.178224 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.12526 -37.91768 -36.72582 -34.79409 -32.76558 -31.61113 -30.38895 -28.52094 -26.59587 -24.88985 -24.44488 -23.15824 -22.07388 -21.23474 -19.26553 -19.14672 -18.22706 -16.62397 -16.55108 -16.06369 -15.75944 -14.81068 -14.70018 -14.30650 -13.95305 -13.53289 -13.33708 -13.01507 -12.84526 -12.55260 -12.50524 -12.16928 -11.91235 -11.58504 -11.12840 -11.04312 -10.90991 -10.70234 -10.49555 -10.47315 -9.95911 -9.93135 -9.62414 -9.49624 -8.96548 -8.76730 -8.33295 -8.17086 -7.23224 -5.96111 -3.97566 0.23099 1.11713 1.70338 1.71267 2.38400 2.87334 2.98373 3.33701 3.40462 3.44984 3.86456 4.46291 4.74806 4.93936 5.06161 5.12088 5.24401 5.35722 5.54862 5.60849 5.70849 5.90331 5.95980 6.06001 6.08450 6.22829 6.37859 6.43307 6.45617 6.61594 6.97333 7.27067 7.31222 7.54000 7.72634 7.77206 7.89889 8.28354 8.53052 8.61745 9.07797 9.65936 11.11038 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.027150 B = 0.003193 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.068807 B = 8768.002647 C = 9131.014319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.145 4.145 3 C 0.215 3.785 4 H 0.034 0.966 5 C -0.488 4.488 6 H 0.061 0.939 7 C 0.057 3.943 8 N -0.896 5.896 9 Si 0.893 3.107 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.274 1.274 13 N -0.679 5.679 14 C 0.135 3.865 15 C 0.010 3.990 16 C -0.054 4.054 17 O -0.196 6.196 18 C 0.242 3.758 19 C -0.125 4.125 20 C -0.105 4.105 21 C -0.137 4.137 22 C -0.223 4.223 23 S 0.212 5.788 24 N -0.459 5.459 25 H 0.022 0.978 26 H 0.065 0.935 27 H 0.030 0.970 28 H 0.012 0.988 29 H 0.092 0.908 30 H 0.259 0.741 31 H 0.332 0.668 32 H 0.040 0.960 33 H 0.083 0.917 34 H 0.222 0.778 35 H 0.147 0.853 36 H 0.145 0.855 37 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.531 2.516 -21.542 21.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.185 4.185 3 C 0.108 3.892 4 H 0.052 0.948 5 C -0.527 4.527 6 H 0.079 0.921 7 C -0.143 4.143 8 N -0.536 5.536 9 Si 0.722 3.278 10 H -0.209 1.209 11 H -0.214 1.214 12 H -0.199 1.199 13 N -0.311 5.311 14 C 0.005 3.995 15 C -0.112 4.112 16 C -0.126 4.126 17 O -0.083 6.083 18 C 0.038 3.962 19 C -0.243 4.243 20 C -0.140 4.140 21 C -0.167 4.167 22 C -0.360 4.360 23 S 0.478 5.522 24 N -0.190 5.190 25 H 0.041 0.959 26 H 0.084 0.916 27 H 0.049 0.951 28 H 0.031 0.969 29 H 0.111 0.889 30 H 0.069 0.931 31 H 0.150 0.850 32 H 0.058 0.942 33 H 0.101 0.899 34 H 0.238 0.762 35 H 0.165 0.835 36 H 0.163 0.837 37 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -3.722 1.097 -20.372 20.738 hybrid contribution 0.037 1.528 -0.123 1.534 sum -3.685 2.626 -20.494 20.988 Atomic orbital electron populations 1.21553 0.97650 0.98041 1.01197 1.22100 0.95131 1.01019 1.00242 1.19229 0.96157 0.88779 0.85037 0.94769 1.21041 1.30472 1.11537 0.89677 0.92054 1.24901 0.95556 0.95191 0.98670 1.69885 1.39234 1.24117 1.20324 0.86570 0.78998 0.80359 0.81918 1.20862 1.21431 1.19925 1.60999 1.04134 1.63071 1.02925 1.20251 0.96942 0.97421 0.84858 1.21973 0.97483 0.93581 0.98146 1.24998 1.02141 1.00496 0.84970 1.84516 1.47849 1.40101 1.35786 1.22253 0.95996 0.82921 0.95046 1.21461 1.05463 1.01727 0.95671 1.20647 1.00124 1.00715 0.92480 1.19956 0.99277 0.96535 1.00936 1.26084 1.07234 1.00718 1.01938 1.84606 1.38153 1.15269 1.14221 1.70722 1.16778 1.30047 1.01422 0.95881 0.91620 0.95141 0.96939 0.88930 0.93119 0.84967 0.94179 0.89905 0.76199 0.83526 0.83699 0.81233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.82 9.39 37.16 0.35 -2.47 16 2 C -0.15 -3.47 5.50 -26.73 -0.15 -3.61 16 3 C 0.22 5.32 2.33 -68.86 -0.16 5.16 16 4 H 0.03 0.92 7.86 -51.93 -0.41 0.51 16 5 C -0.49 -13.22 7.35 -34.44 -0.25 -13.48 16 6 H 0.06 1.70 7.81 -52.48 -0.41 1.29 16 7 C 0.06 1.57 5.22 -17.82 -0.09 1.47 16 8 N -0.90 -25.21 11.39 55.43 0.63 -24.58 16 9 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 13 N -0.68 -14.70 6.24 -109.23 -0.68 -15.38 16 14 C 0.14 2.50 6.02 -4.98 -0.03 2.47 16 15 C 0.01 0.17 6.57 -82.88 -0.54 -0.37 16 16 C -0.05 -0.79 12.08 29.40 0.36 -0.43 16 17 O -0.20 -2.89 10.79 3.38 0.04 -2.86 16 18 C 0.24 3.75 8.08 -14.13 -0.11 3.64 16 19 C -0.12 -1.59 6.46 -36.77 -0.24 -1.83 16 20 C -0.11 -1.07 10.15 -40.51 -0.41 -1.48 16 21 C -0.14 -1.10 10.15 -41.35 -0.42 -1.52 16 22 C -0.22 -1.77 11.21 29.15 0.33 -1.44 16 23 S 0.21 2.29 23.30 -107.50 -2.50 -0.21 16 24 N -0.46 -8.04 11.33 -8.13 -0.09 -8.13 16 25 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.06 1.58 7.05 -51.93 -0.37 1.21 16 27 H 0.03 0.63 6.42 -51.93 -0.33 0.30 16 28 H 0.01 0.27 7.24 -51.93 -0.38 -0.10 16 29 H 0.09 2.45 6.25 -51.93 -0.32 2.12 16 30 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 31 H 0.33 7.29 6.55 -39.29 -0.26 7.03 16 32 H 0.04 0.77 7.23 -51.93 -0.38 0.40 16 33 H 0.08 1.42 8.13 -51.93 -0.42 1.00 16 34 H 0.22 2.38 8.06 -52.48 -0.42 1.96 16 35 H 0.15 1.29 8.06 -52.49 -0.42 0.87 16 36 H 0.15 0.78 8.06 -52.49 -0.42 0.36 16 37 H 0.17 0.86 8.06 -52.49 -0.42 0.44 16 LS Contribution 327.64 15.07 4.94 4.94 Total: -1.00 -30.02 327.64 -8.60 -38.62 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -4.52 Total: 5.16 kcal Atomic # 6 Polarization: -12.51 SS G_CDS: -1.38 Total: -13.89 kcal Atomic # 7 Polarization: -47.96 SS G_CDS: -0.14 Total: -48.10 kcal Atomic # 8 Polarization: -2.89 SS G_CDS: 0.04 Total: -2.86 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: 2.29 SS G_CDS: -2.50 Total: -0.21 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.02 -8.60 -38.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569706926.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.896 kcal (2) G-P(sol) polarization free energy of solvation -30.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds