Wall clock time and date at job start Tue Mar 31 2020 06:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47219 * 2 1 4 4 H 1.08998 * 109.47024 * 174.09054 * 3 2 1 5 5 C 1.50699 * 109.46972 * 54.09123 * 3 2 1 6 6 H 1.08007 * 119.99538 * 240.00177 * 5 3 2 7 7 C 1.37874 * 120.00017 * 60.00138 * 5 3 2 8 8 N 1.31514 * 120.00251 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99682 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47115 * 89.99729 * 9 7 5 11 11 H 1.48503 * 109.46912 * 209.99457 * 9 7 5 12 12 H 1.48497 * 109.47587 * 329.99941 * 9 7 5 13 13 N 1.46897 * 109.47004 * 294.08696 * 3 2 1 14 14 C 1.46896 * 111.00371 * 275.78009 * 13 3 2 15 15 C 1.50698 * 109.47396 * 176.21361 * 14 13 3 16 16 C 1.34479 * 126.05526 * 94.99696 * 15 14 13 17 17 O 1.34902 * 107.33467 * 179.75968 * 16 15 14 18 18 C 1.34543 * 107.67938 * 0.23792 * 17 16 15 19 19 C 1.47013 * 125.76077 * 179.97438 * 18 17 16 20 20 C 1.36178 * 125.33382 * 0.03663 * 19 18 17 21 21 C 1.37737 * 114.44222 * 179.97438 * 20 19 18 22 22 C 1.33716 * 115.19205 * 359.97438 * 21 20 19 23 23 S 1.75830 * 109.96133 * 359.73523 * 22 21 20 24 24 N 1.31518 * 108.47564 * 0.02562 * 18 17 16 25 25 H 1.08997 * 109.47198 * 178.55693 * 1 2 3 26 26 H 1.08999 * 109.46954 * 298.56133 * 1 2 3 27 27 H 1.09001 * 109.46704 * 58.55653 * 1 2 3 28 28 H 1.09002 * 109.47041 * 240.00333 * 2 1 3 29 29 H 1.09000 * 109.47315 * 120.00224 * 2 1 3 30 30 H 0.96997 * 119.99782 * 180.02562 * 8 7 5 31 31 H 1.00903 * 110.99880 * 39.73390 * 13 3 2 32 32 H 1.08995 * 109.47194 * 56.21099 * 14 13 3 33 33 H 1.09001 * 109.47060 * 296.21083 * 14 13 3 34 34 H 1.08003 * 126.33089 * 0.02562 * 16 15 14 35 35 H 1.07997 * 122.77989 * 0.02562 * 20 19 18 36 36 H 1.08001 * 122.39957 * 179.97438 * 21 20 19 37 37 H 1.08001 * 125.01446 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1249 1.4443 0.1058 5 6 1.4218 2.1939 1.1508 6 1 0.8149 3.0670 0.9617 7 6 1.6310 1.7666 2.4449 8 7 2.3696 0.7031 2.6750 9 14 0.8641 2.6976 3.8712 10 1 -0.4779 2.1341 4.1657 11 1 1.7300 2.5666 5.0705 12 1 0.7304 4.1321 3.5114 13 7 1.6703 2.0926 -1.2644 14 6 2.6510 1.7938 -2.3164 15 6 2.1915 2.3985 -3.6180 16 6 2.5592 3.5956 -4.1082 17 8 1.9312 3.7556 -5.2913 18 6 1.1833 2.6585 -5.5086 19 6 0.3337 2.4168 -6.6838 20 6 0.1778 3.2718 -7.7322 21 6 -0.6735 2.8185 -8.7155 22 6 -1.2126 1.6155 -8.4916 23 16 -0.6333 0.9738 -6.9605 24 7 1.3397 1.8393 -4.4916 25 1 -0.3633 -1.0273 -0.0259 26 1 -0.3633 0.4913 0.9026 27 1 -0.3633 0.5361 -0.8768 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 2.5165 0.4024 3.5854 31 1 0.7405 1.8247 -1.5503 32 1 2.7441 0.7139 -2.4303 33 1 3.6182 2.2149 -2.0417 34 1 3.2360 4.2970 -3.6429 35 1 0.6806 4.2259 -7.7883 36 1 -0.8900 3.3936 -9.6037 37 1 -1.8991 1.1108 -9.1552 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000569706926.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:41 Heat of formation + Delta-G solvation = 36.630780 kcal Electronic energy + Delta-G solvation = -20153.710285 eV Core-core repulsion = 17023.636620 eV Total energy + Delta-G solvation = -3130.073665 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -44.28447 -38.68419 -38.46425 -36.15263 -34.45669 -33.09001 -31.89285 -29.70423 -28.37119 -26.18613 -25.64598 -25.03904 -23.08438 -22.43647 -21.19646 -20.02927 -19.15033 -18.16842 -17.73961 -17.52301 -16.78292 -16.59893 -16.32938 -15.68766 -15.23998 -14.85743 -14.61599 -14.36851 -14.10924 -13.82023 -13.69243 -13.64215 -13.31954 -13.10645 -12.81079 -12.60521 -12.48016 -12.33230 -11.94113 -11.78529 -11.73702 -11.62577 -11.44781 -10.99908 -10.65763 -10.43286 -9.55415 -9.18858 -8.99389 -8.05211 -6.13533 -0.61390 0.30415 0.67747 1.00078 1.43712 1.44705 1.47013 1.55410 1.82570 1.95131 2.46738 2.79918 3.23854 3.67571 3.82768 4.00141 4.16823 4.31877 4.51557 4.52406 4.54789 4.59717 4.62634 4.71745 4.79287 4.84871 4.99289 5.09662 5.13256 5.27723 5.33017 5.40095 5.41772 5.64350 5.72407 5.81544 6.29245 6.58701 6.64058 6.73521 6.96745 7.53819 9.00538 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.027150 B = 0.003193 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.068807 B = 8768.002647 C = 9131.014319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.138 4.138 3 C 0.222 3.778 4 H 0.008 0.992 5 C -0.501 4.501 6 H 0.051 0.949 7 C 0.016 3.984 8 N -0.920 5.920 9 Si 0.952 3.048 10 H -0.278 1.278 11 H -0.285 1.285 12 H -0.271 1.271 13 N -0.679 5.679 14 C 0.143 3.857 15 C -0.021 4.021 16 C -0.040 4.040 17 O -0.195 6.195 18 C 0.247 3.753 19 C -0.172 4.172 20 C -0.084 4.084 21 C -0.143 4.143 22 C -0.191 4.191 23 S 0.170 5.830 24 N -0.495 5.495 25 H 0.042 0.958 26 H 0.044 0.956 27 H 0.040 0.960 28 H 0.021 0.979 29 H 0.066 0.934 30 H 0.260 0.740 31 H 0.329 0.671 32 H 0.027 0.973 33 H 0.093 0.907 34 H 0.255 0.745 35 H 0.160 0.840 36 H 0.181 0.819 37 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.675 3.714 -23.700 24.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.178 4.178 3 C 0.113 3.887 4 H 0.026 0.974 5 C -0.540 4.540 6 H 0.069 0.931 7 C -0.183 4.183 8 N -0.560 5.560 9 Si 0.778 3.222 10 H -0.204 1.204 11 H -0.211 1.211 12 H -0.196 1.196 13 N -0.310 5.310 14 C 0.014 3.986 15 C -0.142 4.142 16 C -0.111 4.111 17 O -0.082 6.082 18 C 0.042 3.958 19 C -0.290 4.290 20 C -0.119 4.119 21 C -0.172 4.172 22 C -0.328 4.328 23 S 0.435 5.565 24 N -0.226 5.226 25 H 0.061 0.939 26 H 0.063 0.937 27 H 0.059 0.941 28 H 0.040 0.960 29 H 0.084 0.916 30 H 0.069 0.931 31 H 0.147 0.853 32 H 0.046 0.954 33 H 0.111 0.889 34 H 0.271 0.729 35 H 0.177 0.823 36 H 0.198 0.802 37 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -4.860 2.294 -22.532 23.164 hybrid contribution 0.352 1.171 0.348 1.272 sum -4.507 3.465 -22.184 22.901 Atomic orbital electron populations 1.21429 0.96266 0.99220 1.00530 1.21958 0.96288 1.00260 0.99293 1.18989 0.94274 0.89295 0.86092 0.97436 1.21230 1.30473 1.11439 0.90816 0.93066 1.25571 0.95927 0.95911 1.00875 1.70006 1.40083 1.25161 1.20741 0.85649 0.78264 0.79224 0.79042 1.20381 1.21090 1.19606 1.60889 1.04635 1.62658 1.02859 1.20134 0.96577 0.96947 0.84980 1.21761 0.99338 0.95006 0.98059 1.25524 1.01310 0.99890 0.84371 1.84536 1.47860 1.39955 1.35820 1.22762 0.95441 0.82382 0.95170 1.21599 1.07637 1.03518 0.96292 1.21029 0.98923 1.00388 0.91597 1.20316 0.98541 0.96813 1.01515 1.26522 1.06083 1.00236 1.00001 1.84728 1.38937 1.15868 1.16927 1.70657 1.18045 1.31337 1.02520 0.93867 0.93694 0.94150 0.95997 0.91596 0.93126 0.85276 0.95447 0.88879 0.72928 0.82270 0.80161 0.77829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.21 9.39 71.98 0.68 -4.54 16 2 C -0.14 -6.73 5.50 30.60 0.17 -6.56 16 3 C 0.22 11.23 2.33 44.17 0.10 11.33 16 4 H 0.01 0.43 7.86 -2.39 -0.02 0.41 16 5 C -0.50 -27.53 7.35 25.60 0.19 -27.35 16 6 H 0.05 2.87 7.81 -2.91 -0.02 2.85 16 7 C 0.02 0.85 5.22 84.65 0.44 1.30 16 8 N -0.92 -52.59 11.39 21.45 0.24 -52.34 16 9 Si 0.95 44.01 29.54 68.60 2.03 46.03 16 10 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 11 H -0.29 -12.96 7.11 99.48 0.71 -12.26 16 12 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 13 N -0.68 -29.91 6.24 -499.49 -3.12 -33.03 16 14 C 0.14 5.40 6.02 85.56 0.52 5.92 16 15 C -0.02 -0.72 6.57 41.33 0.27 -0.45 16 16 C -0.04 -1.11 12.08 66.96 0.81 -0.30 16 17 O -0.20 -5.58 10.79 -10.81 -0.12 -5.70 16 18 C 0.25 7.63 8.08 87.04 0.70 8.34 16 19 C -0.17 -4.26 6.46 24.09 0.16 -4.10 16 20 C -0.08 -1.50 10.15 21.67 0.22 -1.28 16 21 C -0.14 -1.76 10.15 21.12 0.21 -1.55 16 22 C -0.19 -2.39 11.21 66.79 0.75 -1.65 16 23 S 0.17 3.55 23.30 -56.49 -1.32 2.24 16 24 N -0.49 -17.65 11.33 -293.48 -3.33 -20.98 16 25 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 26 H 0.04 2.17 7.05 -2.39 -0.02 2.15 16 27 H 0.04 1.69 6.42 -2.39 -0.02 1.67 16 28 H 0.02 0.99 7.24 -2.39 -0.02 0.97 16 29 H 0.07 3.58 6.25 -2.39 -0.01 3.56 16 30 H 0.26 14.22 8.31 -92.71 -0.77 13.44 16 31 H 0.33 14.70 6.55 -89.69 -0.59 14.11 16 32 H 0.03 1.09 7.23 -2.39 -0.02 1.07 16 33 H 0.09 3.24 8.13 -2.39 -0.02 3.22 16 34 H 0.25 4.97 8.06 -2.91 -0.02 4.94 16 35 H 0.16 2.36 8.06 -2.91 -0.02 2.34 16 36 H 0.18 0.99 8.06 -2.91 -0.02 0.97 16 37 H 0.20 1.11 8.06 -2.91 -0.02 1.09 16 Total: -1.00 -66.05 327.64 0.12 -65.94 By element: Atomic # 1 Polarization: 18.23 SS G_CDS: 0.51 Total: 18.74 kcal Atomic # 6 Polarization: -26.10 SS G_CDS: 5.22 Total: -20.89 kcal Atomic # 7 Polarization: -100.15 SS G_CDS: -6.20 Total: -106.35 kcal Atomic # 8 Polarization: -5.58 SS G_CDS: -0.12 Total: -5.70 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.03 kcal Atomic # 16 Polarization: 3.55 SS G_CDS: -1.32 Total: 2.24 kcal Total: -66.05 0.12 -65.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569706926.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.567 kcal (2) G-P(sol) polarization free energy of solvation -66.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds