Wall clock time and date at job start Tue Mar 31 2020 06:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52989 * 109.47500 * 2 1 4 4 H 1.09000 * 109.47266 * 305.85395 * 3 2 1 5 5 C 1.50697 * 109.47381 * 185.85011 * 3 2 1 6 6 H 1.08007 * 119.99935 * 243.40435 * 5 3 2 7 7 C 1.37877 * 120.00112 * 63.40614 * 5 3 2 8 8 N 1.31511 * 120.00276 * 196.04578 * 7 5 3 9 9 Si 1.86800 * 119.99971 * 16.04339 * 7 5 3 10 10 H 1.48496 * 109.47347 * 92.74643 * 9 7 5 11 11 H 1.48499 * 109.47064 * 212.74916 * 9 7 5 12 12 H 1.48501 * 109.46941 * 332.74787 * 9 7 5 13 13 N 1.46907 * 109.47026 * 65.84812 * 3 2 1 14 14 C 1.46892 * 110.99950 * 258.58619 * 13 3 2 15 15 C 1.50699 * 109.46906 * 175.30812 * 14 13 3 16 16 N 1.30339 * 125.46121 * 90.02595 * 15 14 13 17 17 C 1.34130 * 108.94507 * 179.97438 * 16 15 14 18 18 C 1.36056 * 107.49027 * 0.02562 * 17 16 15 19 19 C 1.47216 * 126.60813 * 180.02562 * 18 17 16 20 20 C 1.35063 * 125.28718 * 179.71877 * 19 18 17 21 21 C 1.37927 * 114.65454 * 179.79147 * 20 19 18 22 22 C 1.33617 * 115.08672 * 0.50077 * 21 20 19 23 23 S 1.75849 * 109.80616 * 359.73151 * 22 21 20 24 24 O 1.34112 * 125.46170 * 269.72063 * 15 14 13 25 25 H 1.09000 * 109.46447 * 295.85043 * 1 2 3 26 26 H 1.08999 * 109.47053 * 55.84606 * 1 2 3 27 27 H 1.09000 * 109.47632 * 175.85247 * 1 2 3 28 28 H 1.08999 * 109.46699 * 240.00091 * 2 1 3 29 29 H 1.09004 * 109.47300 * 120.00799 * 2 1 3 30 30 H 0.96998 * 120.00613 * 179.97438 * 8 7 5 31 31 H 1.00903 * 110.99632 * 134.63094 * 13 3 2 32 32 H 1.09006 * 109.47358 * 55.31449 * 14 13 3 33 33 H 1.08994 * 109.47581 * 295.30706 * 14 13 3 34 34 H 1.08004 * 126.25525 * 179.97438 * 17 16 15 35 35 H 1.08006 * 122.66978 * 0.02562 * 20 19 18 36 36 H 1.07997 * 122.45574 * 180.20769 * 21 20 19 37 37 H 1.08002 * 125.09693 * 179.74749 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5937 1.9856 -0.8329 5 6 3.5401 1.4448 -0.1448 6 1 4.1586 1.8358 0.6496 7 6 4.1228 0.9480 -1.2914 8 7 5.4047 0.6547 -1.3035 9 14 3.0914 0.6914 -2.8275 10 1 3.1663 1.9035 -3.6822 11 1 3.6089 -0.4786 -3.5815 12 1 1.6791 0.4454 -2.4401 13 7 1.6690 2.0930 1.2638 14 6 0.4999 2.9639 1.0841 15 6 0.0794 3.5221 2.4193 16 7 0.5106 4.6348 2.9434 17 6 -0.0793 4.8123 4.1349 18 6 -0.9084 3.7538 4.3424 19 6 -1.7618 3.5247 5.5199 20 6 -2.5803 2.4648 5.6960 21 6 -3.2782 2.4682 6.8856 22 6 -3.0468 3.5211 7.6752 23 16 -1.8794 4.5925 6.9126 24 8 -0.8028 2.9563 3.2562 25 1 -0.3632 0.4481 0.9249 26 1 -0.3633 0.5769 -0.8504 27 1 -0.3634 -1.0249 -0.0743 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5140 0.8899 30 1 5.8146 0.3048 -2.1100 31 1 2.4476 2.6073 1.6479 32 1 -0.3206 2.3873 0.6568 33 1 0.7567 3.7830 0.4126 34 1 0.0762 5.6432 4.8071 35 1 -2.6776 1.6756 4.9651 36 1 -3.9650 1.6802 7.1569 37 1 -3.5075 3.6887 8.6375 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000571773838.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:52 Heat of formation + Delta-G solvation = 60.247519 kcal Electronic energy + Delta-G solvation = -20203.539459 eV Core-core repulsion = 17074.489892 eV Total energy + Delta-G solvation = -3129.049567 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.17807 -38.01603 -36.79117 -34.70568 -33.05413 -31.99433 -31.23733 -28.88441 -27.34665 -25.22061 -23.90333 -22.53864 -22.34633 -21.20613 -19.77451 -19.39420 -18.25524 -17.25883 -16.60505 -16.35990 -15.81685 -15.25132 -14.44071 -14.21123 -14.09753 -13.69600 -13.38228 -13.31186 -12.94480 -12.86872 -12.57305 -12.43992 -12.33693 -11.72537 -11.58873 -11.29493 -11.19580 -10.86413 -10.78270 -10.52935 -10.41899 -9.99770 -9.90598 -9.45238 -9.22367 -8.83592 -8.49858 -8.10092 -7.67986 -6.18280 -4.14625 0.20863 1.03021 1.58597 1.66062 2.45749 2.77262 2.86012 3.24112 3.34204 3.36331 4.07217 4.35627 4.46994 4.72652 4.90259 5.07286 5.10910 5.20883 5.25114 5.47711 5.55448 5.72520 5.80125 5.89648 6.00243 6.01397 6.03207 6.14553 6.18509 6.29877 6.55961 6.69881 6.93105 6.94884 7.35915 7.53505 7.77504 7.79797 8.17509 8.48741 8.89486 9.46263 10.94390 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.032754 B = 0.003155 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.659052 B = 8872.550181 C = 9267.156617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.110 4.110 3 C 0.195 3.805 4 H 0.009 0.991 5 C -0.538 4.538 6 H 0.077 0.923 7 C 0.080 3.920 8 N -0.886 5.886 9 Si 0.863 3.137 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.250 1.250 13 N -0.675 5.675 14 C 0.144 3.856 15 C 0.231 3.769 16 N -0.480 5.480 17 C -0.013 4.013 18 C 0.004 3.996 19 C -0.112 4.112 20 C -0.120 4.120 21 C -0.130 4.130 22 C -0.217 4.217 23 S 0.154 5.846 24 O -0.183 6.183 25 H 0.054 0.946 26 H 0.039 0.961 27 H 0.037 0.963 28 H 0.053 0.947 29 H 0.061 0.939 30 H 0.265 0.735 31 H 0.349 0.651 32 H 0.098 0.902 33 H 0.074 0.926 34 H 0.183 0.817 35 H 0.146 0.854 36 H 0.145 0.855 37 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.225 5.955 14.485 24.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.148 4.148 3 C 0.087 3.913 4 H 0.027 0.973 5 C -0.575 4.575 6 H 0.095 0.905 7 C -0.124 4.124 8 N -0.523 5.523 9 Si 0.690 3.310 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.173 1.173 13 N -0.309 5.309 14 C 0.013 3.987 15 C 0.024 3.976 16 N -0.209 5.209 17 C -0.155 4.155 18 C -0.051 4.051 19 C -0.229 4.229 20 C -0.151 4.151 21 C -0.160 4.160 22 C -0.353 4.353 23 S 0.418 5.582 24 O -0.069 6.069 25 H 0.073 0.927 26 H 0.058 0.942 27 H 0.056 0.944 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.169 0.831 32 H 0.116 0.884 33 H 0.092 0.908 34 H 0.200 0.800 35 H 0.164 0.836 36 H 0.163 0.837 37 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -17.364 7.057 14.707 23.825 hybrid contribution -1.109 -1.239 -1.303 2.113 sum -18.473 5.818 13.403 23.553 Atomic orbital electron populations 1.21909 0.98621 0.99833 1.00556 1.21878 0.92695 0.99111 1.01134 1.19490 0.95908 0.90787 0.85110 0.97328 1.21167 0.89129 1.43005 1.04249 0.90462 1.24884 0.94795 0.93906 0.98769 1.69981 1.11723 1.42099 1.28469 0.87197 0.82319 0.77945 0.83579 1.20691 1.21227 1.17347 1.60600 1.07429 1.32310 1.30542 1.20578 0.97135 0.96767 0.84174 1.26709 0.87819 0.88366 0.94703 1.70397 1.25011 1.16938 1.08527 1.23340 0.97037 0.99518 0.95592 1.20123 1.03118 0.93351 0.88510 1.21578 1.03391 1.01350 0.96625 1.20493 0.97002 0.98707 0.98855 1.20059 1.02217 0.99628 0.94072 1.25813 1.04892 0.99499 1.05060 1.84145 1.40990 1.23644 1.09422 1.84512 1.51691 1.45778 1.24963 0.92711 0.94202 0.94372 0.92858 0.92065 0.92515 0.83146 0.88396 0.90833 0.80037 0.83608 0.83693 0.81285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.68 8.74 37.16 0.32 -2.35 16 2 C -0.11 -2.34 4.85 -26.74 -0.13 -2.47 16 3 C 0.20 4.39 1.75 -68.87 -0.12 4.27 16 4 H 0.01 0.20 6.35 -51.93 -0.33 -0.13 16 5 C -0.54 -14.53 9.03 -34.44 -0.31 -14.84 16 6 H 0.08 2.27 7.67 -52.48 -0.40 1.87 16 7 C 0.08 2.24 5.31 -17.82 -0.09 2.14 16 8 N -0.89 -26.40 13.96 55.43 0.77 -25.62 16 9 Si 0.86 20.47 25.76 -169.99 -4.38 16.09 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.25 -5.51 5.49 56.52 0.31 -5.20 16 13 N -0.67 -13.52 6.07 -109.23 -0.66 -14.18 16 14 C 0.14 2.43 5.65 -4.98 -0.03 2.41 16 15 C 0.23 3.89 7.88 -12.91 -0.10 3.79 16 16 N -0.48 -8.16 11.27 -10.73 -0.12 -8.28 16 17 C -0.01 -0.19 11.67 -17.33 -0.20 -0.39 16 18 C 0.00 0.06 7.18 -36.72 -0.26 -0.20 16 19 C -0.11 -1.34 6.42 -37.06 -0.24 -1.58 16 20 C -0.12 -1.29 10.10 -40.82 -0.41 -1.70 16 21 C -0.13 -1.09 10.16 -41.31 -0.42 -1.51 16 22 C -0.22 -1.63 11.22 29.11 0.33 -1.31 16 23 S 0.15 1.36 23.10 -107.50 -2.48 -1.12 16 24 O -0.18 -2.99 10.80 3.80 0.04 -2.95 16 25 H 0.05 0.93 6.65 -51.93 -0.35 0.58 16 26 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.05 1.19 4.88 -51.93 -0.25 0.94 16 29 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 30 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 31 H 0.35 7.34 7.96 -39.29 -0.31 7.03 16 32 H 0.10 1.53 6.01 -51.93 -0.31 1.22 16 33 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.18 2.04 8.06 -52.48 -0.42 1.62 16 35 H 0.15 1.54 8.06 -52.48 -0.42 1.12 16 36 H 0.15 0.87 8.06 -52.49 -0.42 0.45 16 37 H 0.17 0.80 8.06 -52.49 -0.42 0.37 16 LS Contribution 323.25 15.07 4.87 4.87 Total: -1.00 -30.33 323.25 -8.20 -38.53 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -4.57 Total: 6.40 kcal Atomic # 6 Polarization: -12.07 SS G_CDS: -1.67 Total: -13.74 kcal Atomic # 7 Polarization: -48.07 SS G_CDS: -0.01 Total: -48.08 kcal Atomic # 8 Polarization: -2.99 SS G_CDS: 0.04 Total: -2.95 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -4.38 Total: 16.09 kcal Atomic # 16 Polarization: 1.36 SS G_CDS: -2.48 Total: -1.12 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.33 -8.20 -38.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571773838.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.774 kcal (2) G-P(sol) polarization free energy of solvation -30.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds