Wall clock time and date at job start Tue Mar 31 2020 06:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52989 * 109.47500 * 2 1 4 4 H 1.09000 * 109.47266 * 305.85395 * 3 2 1 5 5 C 1.50697 * 109.47381 * 185.85011 * 3 2 1 6 6 H 1.08007 * 119.99935 * 243.40435 * 5 3 2 7 7 C 1.37877 * 120.00112 * 63.40614 * 5 3 2 8 8 N 1.31511 * 120.00276 * 196.04578 * 7 5 3 9 9 Si 1.86800 * 119.99971 * 16.04339 * 7 5 3 10 10 H 1.48496 * 109.47347 * 92.74643 * 9 7 5 11 11 H 1.48499 * 109.47064 * 212.74916 * 9 7 5 12 12 H 1.48501 * 109.46941 * 332.74787 * 9 7 5 13 13 N 1.46907 * 109.47026 * 65.84812 * 3 2 1 14 14 C 1.46892 * 110.99950 * 258.58619 * 13 3 2 15 15 C 1.50699 * 109.46906 * 175.30812 * 14 13 3 16 16 N 1.30339 * 125.46121 * 90.02595 * 15 14 13 17 17 C 1.34130 * 108.94507 * 179.97438 * 16 15 14 18 18 C 1.36056 * 107.49027 * 0.02562 * 17 16 15 19 19 C 1.47216 * 126.60813 * 180.02562 * 18 17 16 20 20 C 1.35063 * 125.28718 * 179.71877 * 19 18 17 21 21 C 1.37927 * 114.65454 * 179.79147 * 20 19 18 22 22 C 1.33617 * 115.08672 * 0.50077 * 21 20 19 23 23 S 1.75849 * 109.80616 * 359.73151 * 22 21 20 24 24 O 1.34112 * 125.46170 * 269.72063 * 15 14 13 25 25 H 1.09000 * 109.46447 * 295.85043 * 1 2 3 26 26 H 1.08999 * 109.47053 * 55.84606 * 1 2 3 27 27 H 1.09000 * 109.47632 * 175.85247 * 1 2 3 28 28 H 1.08999 * 109.46699 * 240.00091 * 2 1 3 29 29 H 1.09004 * 109.47300 * 120.00799 * 2 1 3 30 30 H 0.96998 * 120.00613 * 179.97438 * 8 7 5 31 31 H 1.00903 * 110.99632 * 134.63094 * 13 3 2 32 32 H 1.09006 * 109.47358 * 55.31449 * 14 13 3 33 33 H 1.08994 * 109.47581 * 295.30706 * 14 13 3 34 34 H 1.08004 * 126.25525 * 179.97438 * 17 16 15 35 35 H 1.08006 * 122.66978 * 0.02562 * 20 19 18 36 36 H 1.07997 * 122.45574 * 180.20769 * 21 20 19 37 37 H 1.08002 * 125.09693 * 179.74749 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5937 1.9856 -0.8329 5 6 3.5401 1.4448 -0.1448 6 1 4.1586 1.8358 0.6496 7 6 4.1228 0.9480 -1.2914 8 7 5.4047 0.6547 -1.3035 9 14 3.0914 0.6914 -2.8275 10 1 3.1663 1.9035 -3.6822 11 1 3.6089 -0.4786 -3.5815 12 1 1.6791 0.4454 -2.4401 13 7 1.6690 2.0930 1.2638 14 6 0.4999 2.9639 1.0841 15 6 0.0794 3.5221 2.4193 16 7 0.5106 4.6348 2.9434 17 6 -0.0793 4.8123 4.1349 18 6 -0.9084 3.7538 4.3424 19 6 -1.7618 3.5247 5.5199 20 6 -2.5803 2.4648 5.6960 21 6 -3.2782 2.4682 6.8856 22 6 -3.0468 3.5211 7.6752 23 16 -1.8794 4.5925 6.9126 24 8 -0.8028 2.9563 3.2562 25 1 -0.3632 0.4481 0.9249 26 1 -0.3633 0.5769 -0.8504 27 1 -0.3634 -1.0249 -0.0743 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5140 0.8899 30 1 5.8146 0.3048 -2.1100 31 1 2.4476 2.6073 1.6479 32 1 -0.3206 2.3873 0.6568 33 1 0.7567 3.7830 0.4126 34 1 0.0762 5.6432 4.8071 35 1 -2.6776 1.6756 4.9651 36 1 -3.9650 1.6802 7.1569 37 1 -3.5075 3.6887 8.6375 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000571773838.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:52 Heat of formation + Delta-G solvation = 38.157106 kcal Electronic energy + Delta-G solvation = -20204.497371 eV Core-core repulsion = 17074.489892 eV Total energy + Delta-G solvation = -3130.007479 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -44.35855 -38.77272 -38.42112 -35.92856 -34.76828 -33.63149 -32.45023 -30.24567 -28.70388 -26.59170 -24.90557 -24.18414 -23.48677 -22.38681 -21.50876 -20.22400 -19.32070 -18.91004 -17.85233 -17.65257 -17.04711 -16.52341 -15.90883 -15.65633 -15.32737 -15.14232 -14.78902 -14.28277 -14.19959 -14.01893 -13.88989 -13.63205 -13.44680 -13.21940 -13.09822 -12.72443 -12.62744 -12.47082 -12.03846 -11.87125 -11.74488 -11.70843 -11.25251 -11.12300 -10.88387 -10.60468 -9.52248 -9.33025 -9.03204 -8.32910 -6.33829 -0.65783 0.25999 0.66176 0.91913 1.36801 1.40557 1.46547 1.50660 1.66999 1.89623 2.35609 2.90154 3.01479 3.46779 3.58216 3.85731 4.14074 4.16489 4.34135 4.43373 4.48198 4.52107 4.56753 4.59356 4.63209 4.75341 4.87470 5.07817 5.12850 5.22086 5.25364 5.27235 5.36796 5.40397 5.52525 5.77271 5.93437 6.33292 6.52876 6.59561 6.76541 7.31085 8.83655 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.032754 B = 0.003155 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.659052 B = 8872.550181 C = 9267.156617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.110 4.110 3 C 0.201 3.799 4 H 0.018 0.982 5 C -0.543 4.543 6 H 0.034 0.966 7 C 0.022 3.978 8 N -0.939 5.939 9 Si 0.929 3.071 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.219 1.219 13 N -0.678 5.678 14 C 0.149 3.851 15 C 0.209 3.791 16 N -0.498 5.498 17 C -0.031 4.031 18 C 0.014 3.986 19 C -0.160 4.160 20 C -0.115 4.115 21 C -0.144 4.144 22 C -0.194 4.194 23 S 0.175 5.825 24 O -0.194 6.194 25 H 0.059 0.941 26 H 0.053 0.947 27 H 0.058 0.942 28 H 0.043 0.957 29 H 0.044 0.956 30 H 0.267 0.733 31 H 0.339 0.661 32 H 0.115 0.885 33 H 0.078 0.922 34 H 0.207 0.793 35 H 0.141 0.859 36 H 0.171 0.829 37 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.718 6.002 15.492 27.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.149 4.149 3 C 0.092 3.908 4 H 0.036 0.964 5 C -0.581 4.581 6 H 0.052 0.948 7 C -0.177 4.177 8 N -0.578 5.578 9 Si 0.752 3.248 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.141 1.141 13 N -0.310 5.310 14 C 0.020 3.980 15 C 0.003 3.997 16 N -0.227 5.227 17 C -0.172 4.172 18 C -0.041 4.041 19 C -0.277 4.277 20 C -0.147 4.147 21 C -0.173 4.173 22 C -0.330 4.330 23 S 0.439 5.561 24 O -0.080 6.080 25 H 0.078 0.922 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.076 0.924 31 H 0.157 0.843 32 H 0.133 0.867 33 H 0.096 0.904 34 H 0.224 0.776 35 H 0.159 0.841 36 H 0.189 0.811 37 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -20.886 7.116 15.732 27.099 hybrid contribution -0.061 -1.212 -1.341 1.808 sum -20.947 5.904 14.391 26.091 Atomic orbital electron populations 1.21815 0.95212 1.01574 1.01467 1.21794 0.95699 0.97509 0.99904 1.19357 0.92764 0.92183 0.86457 0.96399 1.21479 0.91601 1.41981 1.03055 0.94774 1.25792 0.95932 0.93693 1.02255 1.70125 1.14025 1.44099 1.29525 0.86144 0.82084 0.77755 0.78814 1.20295 1.21324 1.14091 1.60550 1.07966 1.33291 1.29225 1.20544 0.96107 0.96629 0.84769 1.26485 0.89148 0.88948 0.95135 1.70341 1.25414 1.17229 1.09707 1.23720 0.97415 1.00687 0.95396 1.20663 1.02536 0.92588 0.88325 1.21758 1.04987 1.03602 0.97319 1.20742 0.96369 0.97949 0.99620 1.20282 1.02843 1.00935 0.93269 1.26338 1.02934 0.98037 1.05685 1.84085 1.41116 1.23067 1.07806 1.84479 1.51674 1.46295 1.25582 0.92210 0.92822 0.92336 0.93806 0.93736 0.92443 0.84334 0.86680 0.90390 0.77584 0.84121 0.81128 0.77840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.63 8.74 71.98 0.63 -4.00 16 2 C -0.11 -4.59 4.85 30.59 0.15 -4.44 16 3 C 0.20 9.00 1.75 44.16 0.08 9.08 16 4 H 0.02 0.79 6.35 -2.39 -0.02 0.77 16 5 C -0.54 -30.34 9.03 25.60 0.23 -30.11 16 6 H 0.03 2.14 7.67 -2.91 -0.02 2.12 16 7 C 0.02 1.27 5.31 84.66 0.45 1.72 16 8 N -0.94 -58.00 13.96 21.45 0.30 -57.70 16 9 Si 0.93 42.10 25.76 68.60 1.77 43.86 16 10 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 11 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 12 H -0.22 -8.74 5.49 99.48 0.55 -8.19 16 13 N -0.68 -27.45 6.07 -499.49 -3.03 -30.48 16 14 C 0.15 4.98 5.65 85.56 0.48 5.46 16 15 C 0.21 7.08 7.88 88.33 0.70 7.78 16 16 N -0.50 -17.05 11.27 -302.54 -3.41 -20.46 16 17 C -0.03 -0.89 11.67 83.83 0.98 0.09 16 18 C 0.01 0.40 7.18 24.12 0.17 0.57 16 19 C -0.16 -3.63 6.42 23.90 0.15 -3.47 16 20 C -0.11 -2.29 10.10 21.46 0.22 -2.07 16 21 C -0.14 -1.96 10.16 21.15 0.21 -1.75 16 22 C -0.19 -2.18 11.22 66.77 0.75 -1.43 16 23 S 0.17 2.69 23.10 -56.49 -1.30 1.38 16 24 O -0.19 -6.31 10.80 -9.32 -0.10 -6.41 16 25 H 0.06 1.87 6.65 -2.39 -0.02 1.85 16 26 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.04 1.88 4.88 -2.39 -0.01 1.87 16 29 H 0.04 1.96 8.14 -2.38 -0.02 1.94 16 30 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 31 H 0.34 14.88 7.96 -89.69 -0.71 14.17 16 32 H 0.12 3.39 6.01 -2.38 -0.01 3.37 16 33 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 34 H 0.21 4.50 8.06 -2.91 -0.02 4.47 16 35 H 0.14 2.84 8.06 -2.91 -0.02 2.81 16 36 H 0.17 1.40 8.06 -2.91 -0.02 1.38 16 37 H 0.20 0.85 8.06 -2.91 -0.02 0.82 16 Total: -1.00 -68.22 323.25 -0.36 -68.58 By element: Atomic # 1 Polarization: 23.57 SS G_CDS: 0.22 Total: 23.79 kcal Atomic # 6 Polarization: -27.77 SS G_CDS: 5.20 Total: -22.57 kcal Atomic # 7 Polarization: -102.49 SS G_CDS: -6.14 Total: -108.64 kcal Atomic # 8 Polarization: -6.31 SS G_CDS: -0.10 Total: -6.41 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 1.77 Total: 43.86 kcal Atomic # 16 Polarization: 2.69 SS G_CDS: -1.30 Total: 1.38 kcal Total: -68.22 -0.36 -68.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571773838.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.735 kcal (2) G-P(sol) polarization free energy of solvation -68.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds