Wall clock time and date at job start Tue Mar 31 2020 06:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86804 * 120.00226 * 2 1 4 4 H 1.48499 * 109.47085 * 270.00760 * 3 2 1 5 5 H 1.48504 * 109.46568 * 30.00111 * 3 2 1 6 6 H 1.48497 * 109.47372 * 150.00218 * 3 2 1 7 7 C 1.38799 * 120.00204 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00303 * 359.97438 * 7 2 1 9 9 S 1.76206 * 120.00287 * 179.97438 * 7 2 1 10 10 C 1.80994 * 100.00008 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.47325 * 179.97438 * 10 9 7 12 12 O 1.21286 * 119.99641 * 0.02562 * 11 10 9 13 13 N 1.34769 * 120.00409 * 179.97438 * 11 10 9 14 14 C 1.47021 * 125.64933 * 359.96320 * 13 11 10 15 15 C 1.54368 * 107.28981 * 181.12816 * 14 13 11 16 16 C 1.55155 * 102.92085 * 22.13654 * 15 14 13 17 17 H 1.08998 * 111.00330 * 82.64455 * 16 15 14 18 18 C 1.50705 * 111.00241 * 206.45670 * 16 15 14 19 19 C 1.38675 * 120.41661 * 236.81921 * 18 16 15 20 20 C 1.38628 * 118.42013 * 179.97438 * 19 18 16 21 21 C 1.38220 * 119.16326 * 359.97438 * 20 19 18 22 22 N 1.31857 * 120.76198 * 0.02562 * 21 20 19 23 23 C 1.31883 * 121.72627 * 359.97438 * 22 21 20 24 24 C 1.47429 * 125.64837 * 180.02562 * 13 11 10 25 25 H 0.97000 * 119.99934 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.47446 * 60.00557 * 10 9 7 27 27 H 1.09005 * 109.47469 * 300.00204 * 10 9 7 28 28 H 1.09000 * 109.88150 * 300.50913 * 14 13 11 29 29 H 1.09003 * 109.88288 * 61.51887 * 14 13 11 30 30 H 1.09002 * 110.70213 * 263.79491 * 15 14 13 31 31 H 1.08998 * 110.75946 * 140.51154 * 15 14 13 32 32 H 1.07998 * 120.78542 * 359.70640 * 19 18 16 33 33 H 1.07996 * 120.41751 * 179.97438 * 20 19 18 34 34 H 1.07997 * 119.62169 * 180.02562 * 21 20 19 35 35 H 1.08007 * 119.61759 * 180.02562 * 23 22 21 36 36 H 1.09001 * 110.36761 * 36.99906 * 24 13 11 37 37 H 1.09005 * 110.36684 * 274.67459 * 24 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5479 1.4402 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 1.4704 -2.1374 -0.0005 9 16 3.7724 -1.2020 -0.0012 10 6 4.0866 -2.9845 -0.0009 11 6 5.5731 -3.2325 -0.0021 12 8 6.3441 -2.2963 -0.0025 13 7 6.0457 -4.4946 -0.0016 14 6 5.2274 -5.7161 0.0008 15 6 6.1964 -6.9174 0.0296 16 6 7.4960 -6.3011 0.6115 17 1 7.4545 -6.2576 1.6998 18 6 8.7100 -7.0657 0.1502 19 6 9.5867 -7.6147 1.0737 20 6 10.6899 -8.3103 0.6037 21 6 10.8777 -8.4330 -0.7602 22 7 10.0230 -7.8977 -1.6096 23 6 8.9630 -7.2294 -1.1983 24 6 7.4690 -4.8791 -0.0020 25 1 -0.4850 0.8401 0.0004 26 1 3.6435 -3.4318 -0.8907 27 1 3.6440 -3.4314 0.8893 28 1 4.5901 -5.7335 0.8849 29 1 4.6136 -5.7528 -0.8992 30 1 6.3675 -7.2986 -0.9772 31 1 5.8171 -7.7042 0.6816 32 1 9.4164 -7.4993 2.1340 33 1 11.3936 -8.7506 1.2944 34 1 11.7344 -8.9737 -1.1345 35 1 8.2848 -6.8053 -1.9240 36 1 8.0484 -4.1899 0.6122 37 1 7.8565 -4.8983 -1.0207 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000573374348.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:06 Heat of formation + Delta-G solvation = -23.630964 kcal Electronic energy + Delta-G solvation = -19908.501048 eV Core-core repulsion = 16775.814238 eV Total energy + Delta-G solvation = -3132.686811 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.58271 -40.67531 -38.51369 -34.68861 -34.56293 -33.03489 -31.56099 -30.84592 -29.03671 -27.85441 -25.19273 -24.53200 -23.67969 -21.47548 -20.78413 -19.62152 -18.29614 -18.09577 -17.58240 -17.13503 -17.02180 -16.45535 -16.00124 -15.64286 -15.39532 -14.91509 -14.89859 -14.52279 -14.44087 -14.11894 -13.91831 -13.73129 -13.40445 -13.34285 -13.07408 -13.02394 -12.68846 -12.53440 -12.16524 -11.87593 -11.74277 -11.17980 -11.06883 -10.70507 -10.55254 -10.36067 -9.87411 -9.74986 -9.02207 -8.52366 -6.23735 0.14903 0.37027 0.95047 1.30810 1.44462 1.48388 1.52458 2.02651 2.24334 2.66702 2.82523 2.85825 3.39760 3.45994 3.58435 3.73588 3.88127 4.02436 4.06085 4.12278 4.15757 4.27034 4.27649 4.40040 4.43584 4.62629 4.67178 4.80448 4.87610 4.90164 5.00226 5.13148 5.22494 5.30789 5.39195 5.70114 5.79814 6.10575 6.31518 6.92769 7.02063 7.05204 8.59935 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.046043 B = 0.002812 C = 0.002739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.980255 B = 9953.441209 C =10218.523580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.046 3.954 3 Si 0.913 3.087 4 H -0.263 1.263 5 H -0.258 1.258 6 H -0.237 1.237 7 C -0.527 4.527 8 H 0.064 0.936 9 S -0.178 6.178 10 C -0.101 4.101 11 C 0.547 3.453 12 O -0.565 6.565 13 N -0.615 5.615 14 C 0.088 3.912 15 C -0.111 4.111 16 C -0.045 4.045 17 H 0.110 0.890 18 C -0.124 4.124 19 C -0.072 4.072 20 C -0.167 4.167 21 C 0.079 3.921 22 N -0.516 5.516 23 C 0.089 3.911 24 C 0.111 3.889 25 H 0.277 0.723 26 H 0.111 0.889 27 H 0.113 0.887 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.111 0.889 32 H 0.158 0.842 33 H 0.164 0.836 34 H 0.174 0.826 35 H 0.154 0.846 36 H 0.065 0.935 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.493 -21.749 2.939 29.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.159 4.159 3 Si 0.735 3.265 4 H -0.188 1.188 5 H -0.182 1.182 6 H -0.161 1.161 7 C -0.675 4.675 8 H 0.082 0.918 9 S 0.049 5.951 10 C -0.252 4.252 11 C 0.335 3.665 12 O -0.444 6.444 13 N -0.349 5.349 14 C -0.033 4.033 15 C -0.149 4.149 16 C -0.064 4.064 17 H 0.128 0.872 18 C -0.127 4.127 19 C -0.098 4.098 20 C -0.186 4.186 21 C -0.077 4.077 22 N -0.224 5.224 23 C -0.067 4.067 24 C -0.011 4.011 25 H 0.087 0.913 26 H 0.129 0.871 27 H 0.131 0.869 28 H 0.102 0.898 29 H 0.099 0.901 30 H 0.105 0.895 31 H 0.130 0.870 32 H 0.176 0.824 33 H 0.181 0.819 34 H 0.191 0.809 35 H 0.171 0.829 36 H 0.084 0.916 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 20.560 -20.313 2.031 28.973 hybrid contribution -1.340 0.006 0.641 1.485 sum 19.220 -20.306 2.671 28.087 Atomic orbital electron populations 1.70009 1.07233 1.29037 1.49084 1.25548 0.95280 1.02207 0.92902 0.85881 0.80687 0.79686 0.80208 1.18753 1.18223 1.16137 1.22428 0.90003 0.96737 1.58295 0.91827 1.84742 1.06714 1.06075 1.97578 1.23200 0.95295 0.99519 1.07184 1.19680 0.89532 0.81777 0.75527 1.90691 1.59480 1.43069 1.51143 1.48389 1.08626 1.04895 1.73037 1.22415 0.94680 0.82692 1.03552 1.22783 0.92371 0.96384 1.03331 1.21173 0.92337 0.91342 1.01579 0.87205 1.20565 0.97438 1.00072 0.94609 1.21884 0.92737 0.93999 1.01183 1.22481 0.98976 0.99929 0.97207 1.23248 0.97743 0.96120 0.90573 1.67705 1.04142 1.09506 1.41092 1.22754 0.94401 0.95086 0.94477 1.22388 0.81649 0.95896 1.01191 0.91329 0.87131 0.86906 0.89835 0.90129 0.89491 0.87019 0.82421 0.81866 0.80909 0.82853 0.91649 0.91243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.72 13.97 21.65 0.30 -55.42 16 2 C 0.05 2.71 5.50 84.86 0.47 3.18 16 3 Si 0.91 45.20 27.74 68.60 1.90 47.10 16 4 H -0.26 -12.72 7.11 99.48 0.71 -12.01 16 5 H -0.26 -11.93 7.11 99.48 0.71 -11.23 16 6 H -0.24 -11.76 6.74 99.48 0.67 -11.09 16 7 C -0.53 -30.74 10.04 67.95 0.68 -30.06 16 8 H 0.06 3.89 8.03 -2.91 -0.02 3.87 16 9 S -0.18 -9.10 18.55 -56.49 -1.05 -10.15 16 10 C -0.10 -3.90 5.35 71.24 0.38 -3.52 16 11 C 0.55 19.75 7.87 87.66 0.69 20.44 16 12 O -0.57 -25.24 16.12 -3.05 -0.05 -25.29 16 13 N -0.61 -15.64 3.33 -811.73 -2.70 -18.34 16 14 C 0.09 1.48 6.49 86.74 0.56 2.04 16 15 C -0.11 -1.21 6.37 31.80 0.20 -1.01 16 16 C -0.04 -0.58 3.27 -10.15 -0.03 -0.62 16 17 H 0.11 1.21 8.01 -2.39 -0.02 1.19 16 18 C -0.12 -1.68 5.00 -19.77 -0.10 -1.78 16 19 C -0.07 -0.76 9.83 22.47 0.22 -0.54 16 20 C -0.17 -1.62 10.11 22.36 0.23 -1.39 16 21 C 0.08 1.07 11.18 84.68 0.95 2.02 16 22 N -0.52 -9.77 10.36 -195.85 -2.03 -11.80 16 23 C 0.09 1.50 9.47 84.67 0.80 2.30 16 24 C 0.11 2.35 6.32 86.85 0.55 2.89 16 25 H 0.28 15.59 8.31 -92.71 -0.77 14.81 16 26 H 0.11 3.94 8.14 -2.39 -0.02 3.92 16 27 H 0.11 3.98 8.14 -2.39 -0.02 3.96 16 28 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.09 0.89 7.00 -2.39 -0.02 0.87 16 31 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.16 0.90 8.04 -2.91 -0.02 0.88 16 33 H 0.16 0.60 8.06 -2.91 -0.02 0.57 16 34 H 0.17 1.43 8.06 -2.91 -0.02 1.40 16 35 H 0.15 2.40 7.04 -2.91 -0.02 2.38 16 36 H 0.06 1.60 8.04 -2.39 -0.02 1.58 16 37 H 0.07 1.47 6.88 -2.38 -0.02 1.46 16 Total: -1.00 -77.09 325.97 3.01 -74.08 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: 1.03 Total: 5.85 kcal Atomic # 6 Polarization: -11.64 SS G_CDS: 5.60 Total: -6.04 kcal Atomic # 7 Polarization: -81.13 SS G_CDS: -4.43 Total: -85.56 kcal Atomic # 8 Polarization: -25.24 SS G_CDS: -0.05 Total: -25.29 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 1.90 Total: 47.10 kcal Atomic # 16 Polarization: -9.10 SS G_CDS: -1.05 Total: -10.15 kcal Total: -77.09 3.01 -74.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573374348.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.450 kcal (2) G-P(sol) polarization free energy of solvation -77.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds