Wall clock time and date at job start Tue Mar 31 2020 06:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47382 * 2 1 4 4 H 1.09000 * 109.47440 * 305.66092 * 3 2 1 5 5 C 1.50694 * 109.47225 * 185.65962 * 3 2 1 6 6 H 1.07997 * 120.00149 * 240.00022 * 5 3 2 7 7 C 1.37880 * 120.00005 * 60.00239 * 5 3 2 8 8 N 1.31512 * 119.99857 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 119.99943 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47320 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47486 * 120.00409 * 9 7 5 12 12 H 1.48506 * 109.47161 * 239.99836 * 9 7 5 13 13 N 1.46898 * 109.46764 * 65.66063 * 3 2 1 14 14 C 1.46903 * 111.00209 * 205.56127 * 13 3 2 15 15 C 1.50700 * 109.47313 * 184.20963 * 14 13 3 16 16 C 1.33551 * 122.07135 * 95.00105 * 15 14 13 17 17 S 1.76243 * 108.25256 * 179.79238 * 16 15 14 18 18 C 1.76166 * 89.85206 * 0.28748 * 17 16 15 19 19 C 1.47862 * 125.47794 * 179.97438 * 18 17 16 20 20 C 1.46857 * 127.14313 * 359.93612 * 19 18 17 21 21 C 1.34310 * 106.01151 * 180.13620 * 20 19 18 22 22 O 1.34164 * 109.06063 * 359.63673 * 21 20 19 23 23 C 1.34042 * 110.79291 * 0.24041 * 22 21 20 24 24 N 1.30238 * 109.04762 * 359.71110 * 18 17 16 25 25 H 1.09000 * 109.47308 * 175.60790 * 1 2 3 26 26 H 1.09000 * 109.46917 * 295.60340 * 1 2 3 27 27 H 1.09003 * 109.47586 * 55.60151 * 1 2 3 28 28 H 1.09008 * 109.46987 * 240.00316 * 2 1 3 29 29 H 1.08998 * 109.47472 * 120.00738 * 2 1 3 30 30 H 0.97001 * 120.00167 * 179.97438 * 8 7 5 31 31 H 1.00903 * 111.00519 * 329.51346 * 13 3 2 32 32 H 1.09000 * 109.46852 * 64.20444 * 14 13 3 33 33 H 1.09005 * 109.46860 * 304.21098 * 14 13 3 34 34 H 1.08004 * 125.87608 * 359.97438 * 16 15 14 35 35 H 1.07995 * 126.99403 * 0.04561 * 20 19 18 36 36 H 1.08002 * 125.46473 * 179.89859 * 21 20 19 37 37 H 1.08001 * 125.78673 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5964 1.9848 -0.8349 5 6 3.5405 1.4447 -0.1401 6 1 4.1542 1.8863 0.6311 7 6 4.1298 0.8831 -1.2529 8 7 3.3825 0.3450 -2.1918 9 14 5.9896 0.8866 -1.4269 10 1 6.5964 1.5469 -0.2433 11 1 6.4809 -0.5118 -1.5190 12 1 6.3704 1.6268 -2.6568 13 7 1.6651 2.0943 1.2619 14 6 1.5715 3.5508 1.0946 15 6 1.2875 4.1924 2.4283 16 6 2.2610 4.6763 3.2040 17 16 1.5262 5.3427 4.6608 18 6 -0.0655 4.8807 4.0638 19 6 -1.3457 5.1096 4.7674 20 6 -1.5368 5.7519 6.0741 21 6 -2.8597 5.7342 6.3057 22 8 -3.4787 5.1538 5.2665 23 6 -2.5917 4.7734 4.3363 24 7 0.0660 4.3101 2.9004 25 1 -0.3634 -1.0246 -0.0787 26 1 -0.3633 0.4441 0.9268 27 1 -0.3634 0.5806 -0.8479 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 3.7970 -0.0498 -2.9749 31 1 0.8020 1.7156 1.6221 32 1 0.7655 3.7856 0.3994 33 1 2.5135 3.9326 0.7009 34 1 3.3167 4.6643 2.9764 35 1 -0.7696 6.1550 6.7185 36 1 -3.3472 6.1282 7.1852 37 1 -2.8263 4.2836 3.4028 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000581079386.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:47 Heat of formation + Delta-G solvation = 56.246645 kcal Electronic energy + Delta-G solvation = -20071.741194 eV Core-core repulsion = 16942.518137 eV Total energy + Delta-G solvation = -3129.223058 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.60420 -39.48010 -36.21634 -33.76158 -32.46509 -31.39062 -30.32043 -29.00130 -26.92436 -25.46263 -24.27312 -22.50570 -21.87609 -20.81739 -19.55488 -18.85754 -18.29997 -16.97236 -16.26544 -16.21159 -15.51325 -14.93551 -14.82881 -14.33558 -13.96358 -13.66140 -13.39946 -13.21037 -13.11321 -12.65362 -12.37168 -12.17664 -11.97883 -11.44756 -11.13515 -11.07129 -10.81663 -10.58394 -10.43054 -9.95823 -9.73998 -9.63109 -9.57083 -9.35718 -9.12705 -9.00388 -8.34363 -8.10558 -7.22995 -5.96415 -4.00727 0.53688 1.40990 1.63500 1.84915 2.27797 2.80651 3.22536 3.31328 3.39482 3.44148 3.91538 4.45217 4.59310 4.71034 5.03287 5.29508 5.35816 5.47753 5.49054 5.64233 5.64838 5.84683 6.03042 6.14996 6.20607 6.23486 6.30721 6.45506 6.55272 6.82404 6.88154 7.09340 7.18875 7.49149 7.78455 7.89600 7.93595 8.28081 8.39594 8.75229 9.07248 9.64266 11.08948 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.024137 B = 0.003509 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.774511 B = 7977.334442 C = 8945.886576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C 0.219 3.781 4 H 0.004 0.996 5 C -0.493 4.493 6 H 0.062 0.938 7 C 0.055 3.945 8 N -0.895 5.895 9 Si 0.894 3.106 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.286 1.286 13 N -0.680 5.680 14 C 0.138 3.862 15 C 0.085 3.915 16 C -0.223 4.223 17 S 0.063 5.937 18 C 0.141 3.859 19 C -0.129 4.129 20 C -0.197 4.197 21 C -0.033 4.033 22 O -0.178 6.178 23 C 0.030 3.970 24 N -0.461 5.461 25 H 0.037 0.963 26 H 0.035 0.965 27 H 0.042 0.958 28 H 0.100 0.900 29 H 0.040 0.960 30 H 0.259 0.741 31 H 0.322 0.678 32 H 0.034 0.966 33 H 0.091 0.909 34 H 0.181 0.819 35 H 0.155 0.845 36 H 0.207 0.793 37 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.390 10.888 14.979 21.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.163 4.163 3 C 0.112 3.888 4 H 0.021 0.979 5 C -0.532 4.532 6 H 0.080 0.920 7 C -0.146 4.146 8 N -0.535 5.535 9 Si 0.723 3.277 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.212 1.212 13 N -0.312 5.312 14 C 0.006 3.994 15 C -0.047 4.047 16 C -0.362 4.362 17 S 0.318 5.682 18 C -0.135 4.135 19 C -0.134 4.134 20 C -0.218 4.218 21 C -0.099 4.099 22 O -0.074 6.074 23 C -0.043 4.043 24 N -0.176 5.176 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.062 0.938 28 H 0.118 0.882 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.139 0.861 32 H 0.052 0.948 33 H 0.109 0.891 34 H 0.198 0.802 35 H 0.173 0.827 36 H 0.224 0.776 37 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -10.008 11.097 15.630 21.624 hybrid contribution 0.773 -0.343 -1.364 1.605 sum -9.235 10.754 14.266 20.111 Atomic orbital electron populations 1.21879 0.99531 0.99664 0.99681 1.21758 0.91306 1.00192 1.03062 1.19183 0.95526 0.90073 0.84038 0.97874 1.21247 0.91218 1.36557 1.04189 0.91997 1.24963 0.98087 0.95640 0.95868 1.69882 1.34585 1.39512 1.09555 0.86498 0.85802 0.77612 0.77817 1.19809 1.21152 1.21243 1.60723 1.36773 1.00803 1.32932 1.20421 1.00928 0.90312 0.87735 1.20356 0.85631 0.99117 0.99561 1.26736 1.04959 1.07992 0.96561 1.84664 1.02219 1.58417 1.22880 1.24627 0.94558 1.01009 0.93294 1.19111 0.90095 1.08029 0.96140 1.22781 0.96886 1.05565 0.96553 1.23868 0.92036 1.01541 0.92456 1.83920 1.37748 1.60046 1.25649 1.24371 0.86141 0.99795 0.93995 1.66448 1.24829 1.16069 1.10233 0.94403 0.94568 0.93839 0.88173 0.94080 0.93127 0.86097 0.94768 0.89112 0.80193 0.82745 0.77625 0.76753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.98 9.67 37.16 0.36 -2.62 16 2 C -0.12 -2.97 5.36 -26.73 -0.14 -3.11 16 3 C 0.22 5.45 2.02 -68.87 -0.14 5.31 16 4 H 0.00 0.10 7.84 -51.93 -0.41 -0.31 16 5 C -0.49 -13.48 8.58 -34.44 -0.30 -13.77 16 6 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 7 C 0.05 1.51 5.29 -17.82 -0.09 1.41 16 8 N -0.90 -25.35 11.29 55.43 0.63 -24.73 16 9 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 10 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 13 N -0.68 -14.80 6.26 -109.22 -0.68 -15.49 16 14 C 0.14 2.70 5.86 -4.97 -0.03 2.68 16 15 C 0.08 1.48 6.24 -84.38 -0.53 0.95 16 16 C -0.22 -3.46 11.05 29.09 0.32 -3.14 16 17 S 0.06 0.83 23.33 -107.50 -2.51 -1.68 16 18 C 0.14 2.05 7.50 -14.29 -0.11 1.94 16 19 C -0.13 -1.57 6.32 -103.25 -0.65 -2.23 16 20 C -0.20 -1.86 11.05 -37.48 -0.41 -2.28 16 21 C -0.03 -0.25 12.04 29.35 0.35 0.10 16 22 O -0.18 -1.73 10.54 6.78 0.07 -1.66 16 23 C 0.03 0.32 12.05 29.95 0.36 0.69 16 24 N -0.46 -7.72 10.53 -7.55 -0.08 -7.80 16 25 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.04 0.66 6.61 -51.93 -0.34 0.32 16 27 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 28 H 0.10 2.66 5.94 -51.92 -0.31 2.35 16 29 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 31 H 0.32 6.72 6.61 -39.29 -0.26 6.46 16 32 H 0.03 0.68 8.13 -51.93 -0.42 0.25 16 33 H 0.09 1.82 7.90 -51.93 -0.41 1.41 16 34 H 0.18 2.57 8.06 -52.48 -0.42 2.14 16 35 H 0.15 1.19 8.06 -52.49 -0.42 0.76 16 36 H 0.21 0.71 8.06 -52.49 -0.42 0.29 16 37 H 0.22 2.00 8.06 -52.49 -0.42 1.58 16 LS Contribution 331.66 15.07 5.00 5.00 Total: -1.00 -30.21 331.66 -8.26 -38.47 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -4.66 Total: 5.64 kcal Atomic # 6 Polarization: -13.07 SS G_CDS: -1.01 Total: -14.08 kcal Atomic # 7 Polarization: -47.88 SS G_CDS: -0.14 Total: -48.02 kcal Atomic # 8 Polarization: -1.73 SS G_CDS: 0.07 Total: -1.66 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: 0.83 SS G_CDS: -2.51 Total: -1.68 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.21 -8.26 -38.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581079386.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.716 kcal (2) G-P(sol) polarization free energy of solvation -30.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds