Wall clock time and date at job start Tue Mar 31 2020 06:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47382 * 2 1 4 4 H 1.09000 * 109.47440 * 305.66092 * 3 2 1 5 5 C 1.50694 * 109.47225 * 185.65962 * 3 2 1 6 6 H 1.07997 * 120.00149 * 240.00022 * 5 3 2 7 7 C 1.37880 * 120.00005 * 60.00239 * 5 3 2 8 8 N 1.31512 * 119.99857 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 119.99943 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47320 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47486 * 120.00409 * 9 7 5 12 12 H 1.48506 * 109.47161 * 239.99836 * 9 7 5 13 13 N 1.46898 * 109.46764 * 65.66063 * 3 2 1 14 14 C 1.46903 * 111.00209 * 205.56127 * 13 3 2 15 15 C 1.50700 * 109.47313 * 184.20963 * 14 13 3 16 16 C 1.33551 * 122.07135 * 95.00105 * 15 14 13 17 17 S 1.76243 * 108.25256 * 179.79238 * 16 15 14 18 18 C 1.76166 * 89.85206 * 0.28748 * 17 16 15 19 19 C 1.47862 * 125.47794 * 179.97438 * 18 17 16 20 20 C 1.46857 * 127.14313 * 359.93612 * 19 18 17 21 21 C 1.34310 * 106.01151 * 180.13620 * 20 19 18 22 22 O 1.34164 * 109.06063 * 359.63673 * 21 20 19 23 23 C 1.34042 * 110.79291 * 0.24041 * 22 21 20 24 24 N 1.30238 * 109.04762 * 359.71110 * 18 17 16 25 25 H 1.09000 * 109.47308 * 175.60790 * 1 2 3 26 26 H 1.09000 * 109.46917 * 295.60340 * 1 2 3 27 27 H 1.09003 * 109.47586 * 55.60151 * 1 2 3 28 28 H 1.09008 * 109.46987 * 240.00316 * 2 1 3 29 29 H 1.08998 * 109.47472 * 120.00738 * 2 1 3 30 30 H 0.97001 * 120.00167 * 179.97438 * 8 7 5 31 31 H 1.00903 * 111.00519 * 329.51346 * 13 3 2 32 32 H 1.09000 * 109.46852 * 64.20444 * 14 13 3 33 33 H 1.09005 * 109.46860 * 304.21098 * 14 13 3 34 34 H 1.08004 * 125.87608 * 359.97438 * 16 15 14 35 35 H 1.07995 * 126.99403 * 0.04561 * 20 19 18 36 36 H 1.08002 * 125.46473 * 179.89859 * 21 20 19 37 37 H 1.08001 * 125.78673 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5964 1.9848 -0.8349 5 6 3.5405 1.4447 -0.1401 6 1 4.1542 1.8863 0.6311 7 6 4.1298 0.8831 -1.2529 8 7 3.3825 0.3450 -2.1918 9 14 5.9896 0.8866 -1.4269 10 1 6.5964 1.5469 -0.2433 11 1 6.4809 -0.5118 -1.5190 12 1 6.3704 1.6268 -2.6568 13 7 1.6651 2.0943 1.2619 14 6 1.5715 3.5508 1.0946 15 6 1.2875 4.1924 2.4283 16 6 2.2610 4.6763 3.2040 17 16 1.5262 5.3427 4.6608 18 6 -0.0655 4.8807 4.0638 19 6 -1.3457 5.1096 4.7674 20 6 -1.5368 5.7519 6.0741 21 6 -2.8597 5.7342 6.3057 22 8 -3.4787 5.1538 5.2665 23 6 -2.5917 4.7734 4.3363 24 7 0.0660 4.3101 2.9004 25 1 -0.3634 -1.0246 -0.0787 26 1 -0.3633 0.4441 0.9268 27 1 -0.3634 0.5806 -0.8479 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 3.7970 -0.0498 -2.9749 31 1 0.8020 1.7156 1.6221 32 1 0.7655 3.7856 0.3994 33 1 2.5135 3.9326 0.7009 34 1 3.3167 4.6643 2.9764 35 1 -0.7696 6.1550 6.7185 36 1 -3.3472 6.1282 7.1852 37 1 -2.8263 4.2836 3.4028 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000581079386.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:46 Heat of formation + Delta-G solvation = 37.006495 kcal Electronic energy + Delta-G solvation = -20072.575510 eV Core-core repulsion = 16942.518137 eV Total energy + Delta-G solvation = -3130.057373 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.34351 -40.71710 -38.03540 -34.92901 -34.13257 -33.01511 -31.39621 -30.06734 -28.75241 -26.87707 -25.68758 -24.30600 -22.59517 -21.89057 -21.43508 -19.94695 -19.22542 -18.41037 -17.97900 -16.97622 -16.83349 -16.67701 -16.07268 -15.83837 -15.40052 -15.10319 -14.77264 -14.42586 -14.14260 -13.87907 -13.82819 -13.61171 -13.23267 -13.17366 -12.88445 -12.80159 -12.51319 -12.39310 -11.98547 -11.59025 -11.52431 -11.33761 -11.04265 -10.75950 -10.43369 -10.34763 -9.93014 -9.17009 -9.04709 -8.06409 -6.18534 -0.54847 0.31269 0.67486 0.88377 1.34836 1.41330 1.43560 1.55182 2.09021 2.11742 2.44850 2.91490 3.19175 3.73579 3.85912 3.93218 4.14067 4.20602 4.36491 4.47188 4.54742 4.59596 4.66287 4.75384 4.76636 4.86329 5.06324 5.08906 5.18591 5.23660 5.33903 5.39324 5.56488 5.74394 5.86575 6.09201 6.33735 6.43934 6.71877 6.90384 6.94491 7.50283 8.97375 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.024137 B = 0.003509 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.774511 B = 7977.334442 C = 8945.886576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.120 4.120 3 C 0.225 3.775 4 H -0.028 1.028 5 C -0.511 4.511 6 H 0.053 0.947 7 C 0.009 3.991 8 N -0.920 5.920 9 Si 0.957 3.043 10 H -0.269 1.269 11 H -0.281 1.281 12 H -0.282 1.282 13 N -0.678 5.678 14 C 0.146 3.854 15 C 0.067 3.933 16 C -0.240 4.240 17 S 0.127 5.873 18 C 0.136 3.864 19 C -0.161 4.161 20 C -0.212 4.212 21 C -0.015 4.015 22 O -0.182 6.182 23 C 0.031 3.969 24 N -0.489 5.489 25 H 0.059 0.941 26 H 0.051 0.949 27 H 0.037 0.963 28 H 0.071 0.929 29 H 0.035 0.965 30 H 0.260 0.740 31 H 0.327 0.673 32 H 0.026 0.974 33 H 0.078 0.922 34 H 0.187 0.813 35 H 0.171 0.829 36 H 0.252 0.748 37 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.974 11.776 17.305 23.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.159 4.159 3 C 0.117 3.883 4 H -0.011 1.011 5 C -0.550 4.550 6 H 0.071 0.929 7 C -0.189 4.189 8 N -0.560 5.560 9 Si 0.784 3.216 10 H -0.194 1.194 11 H -0.207 1.207 12 H -0.207 1.207 13 N -0.310 5.310 14 C 0.013 3.987 15 C -0.064 4.064 16 C -0.379 4.379 17 S 0.383 5.617 18 C -0.139 4.139 19 C -0.166 4.166 20 C -0.232 4.232 21 C -0.080 4.080 22 O -0.077 6.077 23 C -0.043 4.043 24 N -0.205 5.205 25 H 0.078 0.922 26 H 0.070 0.930 27 H 0.056 0.944 28 H 0.090 0.910 29 H 0.054 0.946 30 H 0.070 0.930 31 H 0.145 0.855 32 H 0.044 0.956 33 H 0.096 0.904 34 H 0.204 0.796 35 H 0.188 0.812 36 H 0.267 0.733 37 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -10.599 12.000 17.980 24.075 hybrid contribution 0.862 -0.539 -1.971 2.218 sum -9.737 11.460 16.009 21.965 Atomic orbital electron populations 1.21740 0.96453 1.01150 1.00254 1.21592 0.94079 0.98907 1.01285 1.18970 0.94373 0.90660 0.84262 1.01082 1.21480 0.92508 1.36734 1.04235 0.92912 1.25694 1.02364 0.95266 0.95547 1.70008 1.36222 1.39895 1.09884 0.85514 0.80638 0.77654 0.77840 1.19361 1.20720 1.20750 1.60631 1.37135 1.02122 1.31112 1.20233 0.99941 0.89011 0.89466 1.19990 0.86735 1.00637 0.99077 1.26914 1.05240 1.07860 0.97916 1.84355 1.00170 1.56832 1.20298 1.25081 0.96324 0.99714 0.92749 1.19372 0.89555 1.09963 0.97744 1.23025 0.98243 1.06227 0.95752 1.24729 0.91640 0.99249 0.92411 1.83952 1.37722 1.60011 1.25984 1.24533 0.86059 0.99289 0.94397 1.66395 1.24571 1.17874 1.11668 0.92238 0.92986 0.94410 0.91039 0.94574 0.93043 0.85527 0.95598 0.90392 0.79562 0.81164 0.73263 0.76260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.46 9.67 71.98 0.70 -4.77 16 2 C -0.12 -5.83 5.36 30.59 0.16 -5.66 16 3 C 0.23 11.59 2.02 44.17 0.09 11.68 16 4 H -0.03 -1.61 7.84 -2.39 -0.02 -1.63 16 5 C -0.51 -28.63 8.58 25.60 0.22 -28.41 16 6 H 0.05 2.99 7.81 -2.91 -0.02 2.96 16 7 C 0.01 0.52 5.29 84.66 0.45 0.97 16 8 N -0.92 -53.19 11.29 21.45 0.24 -52.95 16 9 Si 0.96 44.26 29.54 68.60 2.03 46.29 16 10 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 11 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 12 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 13 N -0.68 -30.27 6.26 -499.46 -3.13 -33.40 16 14 C 0.15 5.92 5.86 85.56 0.50 6.42 16 15 C 0.07 2.37 6.24 41.55 0.26 2.63 16 16 C -0.24 -7.37 11.05 66.76 0.74 -6.63 16 17 S 0.13 3.13 23.33 -56.49 -1.32 1.81 16 18 C 0.14 3.85 7.50 87.48 0.66 4.51 16 19 C -0.16 -3.71 6.32 -18.98 -0.12 -3.83 16 20 C -0.21 -3.42 11.05 23.63 0.26 -3.16 16 21 C -0.01 -0.17 12.04 66.92 0.81 0.63 16 22 O -0.18 -3.08 10.54 1.35 0.01 -3.07 16 23 C 0.03 0.63 12.05 67.31 0.81 1.44 16 24 N -0.49 -16.45 10.53 -177.81 -1.87 -18.33 16 25 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 26 H 0.05 1.87 6.61 -2.39 -0.02 1.85 16 27 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.07 3.90 5.94 -2.38 -0.01 3.89 16 29 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 31 H 0.33 13.83 6.61 -89.69 -0.59 13.24 16 32 H 0.03 1.08 8.13 -2.39 -0.02 1.06 16 33 H 0.08 3.30 7.90 -2.38 -0.02 3.28 16 34 H 0.19 5.30 8.06 -2.91 -0.02 5.28 16 35 H 0.17 2.07 8.06 -2.91 -0.02 2.05 16 36 H 0.25 0.47 8.06 -2.91 -0.02 0.45 16 37 H 0.22 4.00 8.06 -2.91 -0.02 3.98 16 Total: -1.00 -66.15 331.66 1.99 -64.16 By element: Atomic # 1 Polarization: 19.17 SS G_CDS: 0.50 Total: 19.66 kcal Atomic # 6 Polarization: -29.71 SS G_CDS: 5.53 Total: -24.18 kcal Atomic # 7 Polarization: -99.92 SS G_CDS: -4.76 Total: -104.68 kcal Atomic # 8 Polarization: -3.08 SS G_CDS: 0.01 Total: -3.07 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Atomic # 16 Polarization: 3.13 SS G_CDS: -1.32 Total: 1.81 kcal Total: -66.15 1.99 -64.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581079386.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.168 kcal (2) G-P(sol) polarization free energy of solvation -66.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds