Wall clock time and date at job start Tue Mar 31 2020 06:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52992 * 109.47170 * 2 1 4 4 H 1.09003 * 109.47607 * 54.85846 * 3 2 1 5 5 C 1.50698 * 109.47177 * 174.86490 * 3 2 1 6 6 H 1.08001 * 120.00009 * 119.99695 * 5 3 2 7 7 C 1.37877 * 119.99770 * 299.99396 * 5 3 2 8 8 N 1.31512 * 120.00248 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 119.99691 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.46964 * 60.00814 * 9 7 5 11 11 H 1.48498 * 109.46804 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.47628 * 300.00578 * 9 7 5 13 13 N 1.46906 * 109.46800 * 294.86400 * 3 2 1 14 14 C 1.46905 * 110.99679 * 153.67016 * 13 3 2 15 15 C 1.50703 * 109.46648 * 176.16012 * 14 13 3 16 16 C 1.33557 * 122.06866 * 95.00247 * 15 14 13 17 17 S 1.76242 * 108.25419 * 179.79149 * 16 15 14 18 18 C 1.76172 * 89.85058 * 0.28566 * 17 16 15 19 19 C 1.47866 * 125.47665 * 179.97438 * 18 17 16 20 20 C 1.46853 * 127.14138 * 359.93675 * 19 18 17 21 21 C 1.34311 * 106.01394 * 180.13723 * 20 19 18 22 22 O 1.34171 * 109.05086 * 359.63533 * 21 20 19 23 23 C 1.34033 * 110.80195 * 0.24309 * 22 21 20 24 24 N 1.30241 * 109.04805 * 359.71407 * 18 17 16 25 25 H 1.08998 * 109.47579 * 186.13243 * 1 2 3 26 26 H 1.09000 * 109.47449 * 306.12938 * 1 2 3 27 27 H 1.08999 * 109.47333 * 66.13367 * 1 2 3 28 28 H 1.08999 * 109.46700 * 239.99337 * 2 1 3 29 29 H 1.09002 * 109.46637 * 119.99749 * 2 1 3 30 30 H 0.96998 * 119.99873 * 179.97438 * 8 7 5 31 31 H 1.00901 * 110.99916 * 29.71610 * 13 3 2 32 32 H 1.09002 * 109.47168 * 56.16838 * 14 13 3 33 33 H 1.08994 * 109.47388 * 296.15894 * 14 13 3 34 34 H 1.08007 * 125.87403 * 359.97438 * 16 15 14 35 35 H 1.08001 * 126.99750 * 0.04991 * 20 19 18 36 36 H 1.07995 * 125.47386 * 179.90614 * 21 20 19 37 37 H 1.07997 * 125.79384 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6034 1.9822 0.8404 5 6 3.5416 1.4443 0.1272 6 1 4.1486 1.8882 -0.6480 7 6 4.1404 0.8794 1.2332 8 7 3.4013 0.3384 2.1769 9 14 6.0019 0.8811 1.3904 10 1 6.4973 2.2811 1.3901 11 1 6.3918 0.2179 2.6605 12 1 6.5961 0.1455 0.2456 13 7 1.6541 2.0982 -1.2567 14 6 1.5442 3.5523 -1.0795 15 6 1.2403 4.1984 -2.4066 16 6 -0.0078 4.4832 -2.7874 17 16 0.0584 5.2296 -4.3826 18 6 1.8129 5.0703 -4.3793 19 6 2.7159 5.5018 -5.4678 20 6 2.3351 6.1330 -6.7379 21 6 3.4813 6.3418 -7.4061 22 8 4.5085 5.9068 -6.6605 23 6 4.0725 5.4012 -5.4983 24 7 2.1873 4.5163 -3.2616 25 1 -0.3634 -1.0217 0.1098 26 1 -0.3634 0.6059 0.8300 27 1 -0.3634 0.4158 -0.9398 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.8227 -0.0593 2.9547 31 1 0.7945 1.7118 -1.6170 32 1 2.4851 3.9433 -0.6921 33 1 0.7417 3.7730 -0.3757 34 1 -0.9034 4.2920 -2.2148 35 1 1.3365 6.3779 -7.0682 36 1 3.5634 6.7920 -8.3843 37 1 4.6926 4.9849 -4.7183 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000581079387.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:49 Heat of formation + Delta-G solvation = 58.133546 kcal Electronic energy + Delta-G solvation = -20112.570968 eV Core-core repulsion = 16983.429733 eV Total energy + Delta-G solvation = -3129.141235 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.54346 -39.47033 -36.24326 -33.73025 -32.46170 -31.37815 -30.29029 -28.98881 -26.85182 -25.54639 -24.22691 -22.51900 -21.81855 -20.74648 -19.57925 -18.85108 -18.28789 -17.02369 -16.23506 -16.14857 -15.40607 -14.93179 -14.78819 -14.32159 -14.08740 -13.62314 -13.34027 -13.16213 -12.98159 -12.53942 -12.40726 -12.26988 -12.19605 -11.52349 -11.22564 -10.86707 -10.74934 -10.60205 -10.39677 -9.92549 -9.73849 -9.63741 -9.47759 -9.33886 -9.10519 -8.98847 -8.31104 -8.10877 -7.22697 -5.93285 -3.96820 0.53438 1.40527 1.69047 1.82367 2.30586 2.87572 3.26905 3.38123 3.41502 3.46013 3.95529 4.49122 4.66292 4.75917 5.06880 5.27235 5.35277 5.40878 5.45108 5.56394 5.72589 5.92901 6.05154 6.10756 6.14438 6.15765 6.30990 6.41615 6.56514 6.83878 6.89003 7.07191 7.18247 7.47363 7.78534 7.95814 7.98293 8.28709 8.40772 8.76024 9.11640 9.68005 11.12194 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.015913 B = 0.004075 C = 0.003381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.179621 B = 6869.388794 C = 8278.615580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C 0.220 3.780 4 H 0.003 0.997 5 C -0.492 4.492 6 H 0.063 0.937 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.896 3.104 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.278 1.278 13 N -0.677 5.677 14 C 0.136 3.864 15 C 0.098 3.902 16 C -0.253 4.253 17 S 0.057 5.943 18 C 0.148 3.852 19 C -0.133 4.133 20 C -0.197 4.197 21 C -0.034 4.034 22 O -0.178 6.178 23 C 0.037 3.963 24 N -0.442 5.442 25 H 0.037 0.963 26 H 0.042 0.958 27 H 0.034 0.966 28 H 0.041 0.959 29 H 0.101 0.899 30 H 0.259 0.741 31 H 0.317 0.683 32 H 0.093 0.907 33 H 0.034 0.966 34 H 0.175 0.825 35 H 0.154 0.846 36 H 0.207 0.793 37 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.762 11.317 -15.680 20.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.164 4.164 3 C 0.114 3.886 4 H 0.021 0.979 5 C -0.531 4.531 6 H 0.081 0.919 7 C -0.145 4.145 8 N -0.538 5.538 9 Si 0.724 3.276 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.203 1.203 13 N -0.309 5.309 14 C 0.003 3.997 15 C -0.034 4.034 16 C -0.392 4.392 17 S 0.312 5.688 18 C -0.128 4.128 19 C -0.139 4.139 20 C -0.218 4.218 21 C -0.100 4.100 22 O -0.073 6.073 23 C -0.036 4.036 24 N -0.156 5.156 25 H 0.057 0.943 26 H 0.061 0.939 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.119 0.881 30 H 0.069 0.931 31 H 0.134 0.866 32 H 0.111 0.889 33 H 0.052 0.948 34 H 0.193 0.807 35 H 0.172 0.828 36 H 0.223 0.777 37 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -5.068 11.563 -16.382 20.682 hybrid contribution -0.155 -0.425 1.492 1.559 sum -5.222 11.138 -14.890 19.314 Atomic orbital electron populations 1.21886 0.99647 0.99780 0.99456 1.21772 0.91170 1.00280 1.03177 1.19176 0.95605 0.89909 0.83955 0.97920 1.21198 0.91159 1.36291 1.04412 0.91907 1.24948 0.98120 0.95644 0.95801 1.69858 1.34809 1.39476 1.09705 0.86599 0.85811 0.78157 0.77051 1.20394 1.21527 1.20320 1.60639 1.36358 1.00489 1.33380 1.20443 1.01497 0.90245 0.87486 1.20388 0.86784 0.98413 0.97850 1.26695 1.02351 1.10853 0.99320 1.84624 1.07958 1.59344 1.16833 1.24768 0.92373 1.00924 0.94689 1.19102 0.92071 1.08521 0.94173 1.22755 0.99900 1.05237 0.93877 1.23858 0.84553 1.03566 0.98042 1.83929 1.36582 1.60864 1.25930 1.24477 0.94093 0.97757 0.87292 1.66461 1.35867 1.12297 1.01008 0.94341 0.93870 0.94690 0.94004 0.88124 0.93072 0.86627 0.88913 0.94825 0.80740 0.82817 0.77669 0.76472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.89 9.63 37.16 0.36 -2.53 16 2 C -0.13 -2.96 5.35 -26.74 -0.14 -3.10 16 3 C 0.22 5.48 2.03 -68.87 -0.14 5.34 16 4 H 0.00 0.09 7.83 -51.93 -0.41 -0.32 16 5 C -0.49 -13.69 8.62 -34.44 -0.30 -13.98 16 6 H 0.06 1.80 7.81 -52.49 -0.41 1.39 16 7 C 0.06 1.53 5.29 -17.82 -0.09 1.44 16 8 N -0.90 -25.57 11.29 55.43 0.63 -24.95 16 9 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 13 N -0.68 -14.67 6.27 -109.22 -0.68 -15.36 16 14 C 0.14 2.64 5.86 -4.97 -0.03 2.61 16 15 C 0.10 1.71 6.23 -84.38 -0.53 1.18 16 16 C -0.25 -3.66 11.05 29.09 0.32 -3.34 16 17 S 0.06 0.73 23.33 -107.50 -2.51 -1.78 16 18 C 0.15 2.25 7.50 -14.29 -0.11 2.14 16 19 C -0.13 -1.74 6.32 -103.25 -0.65 -2.39 16 20 C -0.20 -1.96 11.05 -37.48 -0.41 -2.37 16 21 C -0.03 -0.28 12.04 29.35 0.35 0.07 16 22 O -0.18 -1.89 10.54 6.79 0.07 -1.82 16 23 C 0.04 0.44 12.05 29.95 0.36 0.81 16 24 N -0.44 -7.91 10.53 -7.55 -0.08 -7.99 16 25 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 27 H 0.03 0.60 6.65 -51.93 -0.35 0.26 16 28 H 0.04 1.00 8.14 -51.93 -0.42 0.57 16 29 H 0.10 2.66 5.95 -51.93 -0.31 2.35 16 30 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 31 H 0.32 6.31 6.60 -39.29 -0.26 6.05 16 32 H 0.09 2.01 7.99 -51.93 -0.41 1.59 16 33 H 0.03 0.61 8.07 -51.93 -0.42 0.19 16 34 H 0.18 2.11 8.06 -52.48 -0.42 1.69 16 35 H 0.15 1.22 8.06 -52.49 -0.42 0.80 16 36 H 0.21 0.83 8.06 -52.49 -0.42 0.40 16 37 H 0.22 2.42 8.06 -52.49 -0.42 1.99 16 LS Contribution 331.72 15.07 5.00 5.00 Total: -1.00 -30.83 331.72 -8.26 -39.10 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -4.66 Total: 5.19 kcal Atomic # 6 Polarization: -13.12 SS G_CDS: -1.01 Total: -14.13 kcal Atomic # 7 Polarization: -48.16 SS G_CDS: -0.14 Total: -48.30 kcal Atomic # 8 Polarization: -1.89 SS G_CDS: 0.07 Total: -1.82 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Atomic # 16 Polarization: 0.73 SS G_CDS: -2.51 Total: -1.78 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.83 -8.26 -39.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581079387.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.229 kcal (2) G-P(sol) polarization free energy of solvation -30.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds