Wall clock time and date at job start Tue Mar 31 2020 06:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52992 * 109.47170 * 2 1 4 4 H 1.09003 * 109.47607 * 54.85846 * 3 2 1 5 5 C 1.50698 * 109.47177 * 174.86490 * 3 2 1 6 6 H 1.08001 * 120.00009 * 119.99695 * 5 3 2 7 7 C 1.37877 * 119.99770 * 299.99396 * 5 3 2 8 8 N 1.31512 * 120.00248 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 119.99691 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.46964 * 60.00814 * 9 7 5 11 11 H 1.48498 * 109.46804 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.47628 * 300.00578 * 9 7 5 13 13 N 1.46906 * 109.46800 * 294.86400 * 3 2 1 14 14 C 1.46905 * 110.99679 * 153.67016 * 13 3 2 15 15 C 1.50703 * 109.46648 * 176.16012 * 14 13 3 16 16 C 1.33557 * 122.06866 * 95.00247 * 15 14 13 17 17 S 1.76242 * 108.25419 * 179.79149 * 16 15 14 18 18 C 1.76172 * 89.85058 * 0.28566 * 17 16 15 19 19 C 1.47866 * 125.47665 * 179.97438 * 18 17 16 20 20 C 1.46853 * 127.14138 * 359.93675 * 19 18 17 21 21 C 1.34311 * 106.01394 * 180.13723 * 20 19 18 22 22 O 1.34171 * 109.05086 * 359.63533 * 21 20 19 23 23 C 1.34033 * 110.80195 * 0.24309 * 22 21 20 24 24 N 1.30241 * 109.04805 * 359.71407 * 18 17 16 25 25 H 1.08998 * 109.47579 * 186.13243 * 1 2 3 26 26 H 1.09000 * 109.47449 * 306.12938 * 1 2 3 27 27 H 1.08999 * 109.47333 * 66.13367 * 1 2 3 28 28 H 1.08999 * 109.46700 * 239.99337 * 2 1 3 29 29 H 1.09002 * 109.46637 * 119.99749 * 2 1 3 30 30 H 0.96998 * 119.99873 * 179.97438 * 8 7 5 31 31 H 1.00901 * 110.99916 * 29.71610 * 13 3 2 32 32 H 1.09002 * 109.47168 * 56.16838 * 14 13 3 33 33 H 1.08994 * 109.47388 * 296.15894 * 14 13 3 34 34 H 1.08007 * 125.87403 * 359.97438 * 16 15 14 35 35 H 1.08001 * 126.99750 * 0.04991 * 20 19 18 36 36 H 1.07995 * 125.47386 * 179.90614 * 21 20 19 37 37 H 1.07997 * 125.79384 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6034 1.9822 0.8404 5 6 3.5416 1.4443 0.1272 6 1 4.1486 1.8882 -0.6480 7 6 4.1404 0.8794 1.2332 8 7 3.4013 0.3384 2.1769 9 14 6.0019 0.8811 1.3904 10 1 6.4973 2.2811 1.3901 11 1 6.3918 0.2179 2.6605 12 1 6.5961 0.1455 0.2456 13 7 1.6541 2.0982 -1.2567 14 6 1.5442 3.5523 -1.0795 15 6 1.2403 4.1984 -2.4066 16 6 -0.0078 4.4832 -2.7874 17 16 0.0584 5.2296 -4.3826 18 6 1.8129 5.0703 -4.3793 19 6 2.7159 5.5018 -5.4678 20 6 2.3351 6.1330 -6.7379 21 6 3.4813 6.3418 -7.4061 22 8 4.5085 5.9068 -6.6605 23 6 4.0725 5.4012 -5.4983 24 7 2.1873 4.5163 -3.2616 25 1 -0.3634 -1.0217 0.1098 26 1 -0.3634 0.6059 0.8300 27 1 -0.3634 0.4158 -0.9398 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.8227 -0.0593 2.9547 31 1 0.7945 1.7118 -1.6170 32 1 2.4851 3.9433 -0.6921 33 1 0.7417 3.7730 -0.3757 34 1 -0.9034 4.2920 -2.2148 35 1 1.3365 6.3779 -7.0682 36 1 3.5634 6.7920 -8.3843 37 1 4.6926 4.9849 -4.7183 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000581079387.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:48 Heat of formation + Delta-G solvation = 37.970844 kcal Electronic energy + Delta-G solvation = -20113.445289 eV Core-core repulsion = 16983.429733 eV Total energy + Delta-G solvation = -3130.015556 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.34731 -40.70191 -38.04649 -34.94706 -34.13211 -33.00887 -31.38278 -30.08265 -28.66279 -26.96254 -25.64963 -24.30383 -22.58890 -21.83987 -21.46170 -19.93069 -19.26209 -18.39815 -18.06623 -16.98171 -16.82019 -16.45227 -16.17665 -15.90424 -15.35384 -15.11203 -14.75502 -14.34456 -14.01705 -13.93192 -13.81570 -13.76829 -13.22630 -13.12224 -13.10069 -12.75807 -12.56986 -12.25386 -11.96563 -11.58605 -11.48973 -11.34286 -11.05453 -10.65060 -10.42871 -10.33188 -9.92449 -9.16813 -9.01081 -8.06577 -6.17887 -0.55376 0.32653 0.68046 0.87760 1.35812 1.41131 1.42500 1.50563 2.10449 2.13031 2.44622 2.95409 3.18393 3.74234 3.86003 3.88048 4.13871 4.26402 4.35334 4.49359 4.56681 4.58006 4.61228 4.70337 4.79066 4.91491 5.05592 5.08832 5.18399 5.23672 5.36405 5.40186 5.57662 5.74587 5.88552 6.09291 6.34568 6.46834 6.82529 6.94196 6.97197 7.50651 8.96292 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.015913 B = 0.004075 C = 0.003381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.179621 B = 6869.388794 C = 8278.615580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.120 4.120 3 C 0.228 3.772 4 H -0.024 1.024 5 C -0.513 4.513 6 H 0.044 0.956 7 C 0.013 3.987 8 N -0.918 5.918 9 Si 0.953 3.047 10 H -0.276 1.276 11 H -0.280 1.280 12 H -0.275 1.275 13 N -0.681 5.681 14 C 0.143 3.857 15 C 0.070 3.930 16 C -0.249 4.249 17 S 0.131 5.869 18 C 0.132 3.868 19 C -0.160 4.160 20 C -0.209 4.209 21 C -0.016 4.016 22 O -0.183 6.183 23 C 0.025 3.975 24 N -0.486 5.486 25 H 0.057 0.943 26 H 0.040 0.960 27 H 0.056 0.944 28 H 0.033 0.967 29 H 0.070 0.930 30 H 0.261 0.739 31 H 0.328 0.672 32 H 0.058 0.942 33 H 0.047 0.953 34 H 0.200 0.800 35 H 0.175 0.825 36 H 0.253 0.747 37 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.967 12.242 -17.894 22.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.159 4.159 3 C 0.120 3.880 4 H -0.007 1.007 5 C -0.552 4.552 6 H 0.062 0.938 7 C -0.185 4.185 8 N -0.558 5.558 9 Si 0.779 3.221 10 H -0.202 1.202 11 H -0.206 1.206 12 H -0.201 1.201 13 N -0.313 5.313 14 C 0.011 3.989 15 C -0.062 4.062 16 C -0.389 4.389 17 S 0.387 5.613 18 C -0.143 4.143 19 C -0.165 4.165 20 C -0.229 4.229 21 C -0.082 4.082 22 O -0.078 6.078 23 C -0.048 4.048 24 N -0.201 5.201 25 H 0.076 0.924 26 H 0.059 0.941 27 H 0.075 0.925 28 H 0.051 0.949 29 H 0.088 0.912 30 H 0.070 0.930 31 H 0.147 0.853 32 H 0.077 0.923 33 H 0.065 0.935 34 H 0.217 0.783 35 H 0.192 0.808 36 H 0.269 0.731 37 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -6.289 12.499 -18.616 23.288 hybrid contribution 0.188 -0.623 2.059 2.159 sum -6.101 11.876 -16.558 21.270 Atomic orbital electron populations 1.21745 0.96014 1.01260 1.00580 1.21588 0.94427 0.98722 1.01160 1.18938 0.93980 0.90723 0.84385 1.00664 1.21423 0.92914 1.36541 1.04276 0.93801 1.25619 1.02149 0.95282 0.95491 1.69973 1.36223 1.39702 1.09922 0.85696 0.81017 0.78150 0.77237 1.20182 1.20568 1.20077 1.60482 1.37278 1.01893 1.31661 1.20235 1.00224 0.88846 0.89576 1.20035 0.88076 1.00696 0.97391 1.27012 1.02059 1.09206 1.00583 1.84291 1.05072 1.57458 1.14454 1.25148 0.94516 1.00317 0.94351 1.19419 0.92375 1.09678 0.95072 1.23016 1.01525 1.05683 0.92706 1.24774 0.83330 1.01328 0.98722 1.83945 1.37508 1.60759 1.25589 1.24474 0.94124 0.98269 0.87965 1.66390 1.37233 1.14168 1.02355 0.92384 0.94073 0.92466 0.94852 0.91170 0.92990 0.85317 0.92340 0.93497 0.78302 0.80802 0.73130 0.76978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.17 9.63 71.98 0.69 -4.47 16 2 C -0.12 -5.76 5.35 30.59 0.16 -5.60 16 3 C 0.23 11.70 2.03 44.16 0.09 11.79 16 4 H -0.02 -1.35 7.83 -2.39 -0.02 -1.37 16 5 C -0.51 -29.65 8.62 25.60 0.22 -29.43 16 6 H 0.04 2.64 7.81 -2.91 -0.02 2.62 16 7 C 0.01 0.73 5.29 84.65 0.45 1.18 16 8 N -0.92 -53.44 11.29 21.45 0.24 -53.19 16 9 Si 0.95 45.55 29.54 68.60 2.03 47.57 16 10 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 11 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 12 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 13 N -0.68 -30.19 6.27 -499.45 -3.13 -33.31 16 14 C 0.14 5.77 5.86 85.56 0.50 6.28 16 15 C 0.07 2.46 6.23 41.55 0.26 2.72 16 16 C -0.25 -6.78 11.05 66.76 0.74 -6.05 16 17 S 0.13 3.05 23.33 -56.49 -1.32 1.73 16 18 C 0.13 3.94 7.50 87.48 0.66 4.59 16 19 C -0.16 -4.07 6.32 -18.98 -0.12 -4.19 16 20 C -0.21 -3.64 11.05 23.63 0.26 -3.38 16 21 C -0.02 -0.22 12.04 66.92 0.81 0.59 16 22 O -0.18 -3.64 10.54 1.37 0.01 -3.63 16 23 C 0.03 0.61 12.05 67.31 0.81 1.42 16 24 N -0.49 -17.80 10.53 -177.80 -1.87 -19.67 16 25 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 26 H 0.04 1.53 8.14 -2.39 -0.02 1.52 16 27 H 0.06 1.86 6.65 -2.39 -0.02 1.85 16 28 H 0.03 1.60 8.14 -2.39 -0.02 1.59 16 29 H 0.07 3.80 5.95 -2.39 -0.01 3.79 16 30 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 31 H 0.33 12.97 6.60 -89.69 -0.59 12.38 16 32 H 0.06 2.71 7.99 -2.39 -0.02 2.69 16 33 H 0.05 1.73 8.07 -2.39 -0.02 1.71 16 34 H 0.20 4.25 8.06 -2.91 -0.02 4.22 16 35 H 0.17 2.18 8.06 -2.91 -0.02 2.16 16 36 H 0.25 0.82 8.06 -2.91 -0.02 0.79 16 37 H 0.21 5.10 8.06 -2.91 -0.02 5.07 16 Total: -1.00 -69.22 331.72 1.99 -67.23 By element: Atomic # 1 Polarization: 17.34 SS G_CDS: 0.50 Total: 17.83 kcal Atomic # 6 Polarization: -30.09 SS G_CDS: 5.53 Total: -24.56 kcal Atomic # 7 Polarization: -101.42 SS G_CDS: -4.76 Total: -106.18 kcal Atomic # 8 Polarization: -3.64 SS G_CDS: 0.01 Total: -3.63 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.57 kcal Atomic # 16 Polarization: 3.05 SS G_CDS: -1.32 Total: 1.73 kcal Total: -69.22 1.99 -67.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581079387.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.202 kcal (2) G-P(sol) polarization free energy of solvation -69.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.231 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds