Wall clock time and date at job start Tue Mar 31 2020 06:48:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30991 * 1 3 3 C 1.50700 * 120.00349 * 2 1 4 4 N 1.46494 * 109.47460 * 124.99626 * 3 2 1 5 5 C 1.46500 * 120.00238 * 275.98540 * 4 3 2 6 6 C 1.50698 * 109.47246 * 270.00307 * 5 4 3 7 7 H 1.07998 * 119.99929 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00146 * 179.97438 * 6 5 4 9 9 N 1.31524 * 119.99998 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 120.00303 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47362 * 359.97438 * 10 8 6 12 12 H 1.48495 * 109.47808 * 120.00034 * 10 8 6 13 13 H 1.48508 * 109.47009 * 239.99841 * 10 8 6 14 14 C 1.34779 * 119.99827 * 95.98710 * 4 3 2 15 15 O 1.21686 * 119.99608 * 184.73444 * 14 4 3 16 16 C 1.46680 * 120.00042 * 4.73565 * 14 4 3 17 17 C 1.35657 * 126.13322 * 333.87277 * 16 14 4 18 18 N 1.30936 * 114.19500 * 180.02562 * 17 16 14 19 19 C 1.29425 * 117.36514 * 359.97438 * 18 17 16 20 20 C 1.50698 * 124.80934 * 179.97438 * 19 18 17 21 21 C 1.53002 * 117.49521 * 8.64840 * 20 19 18 22 22 C 1.52997 * 117.49907 * 300.02684 * 20 19 18 23 23 S 1.70954 * 110.39143 * 359.97438 * 19 18 17 24 24 H 1.08001 * 120.00114 * 180.02562 * 1 2 3 25 25 H 1.08000 * 120.00661 * 0.02562 * 1 2 3 26 26 H 1.08007 * 120.00319 * 179.97438 * 2 1 3 27 27 H 1.09000 * 109.46535 * 4.99708 * 3 2 1 28 28 H 1.09004 * 109.46957 * 245.00320 * 3 2 1 29 29 H 1.09004 * 109.46839 * 30.00097 * 5 4 3 30 30 H 1.08998 * 109.47163 * 149.99756 * 5 4 3 31 31 H 0.96998 * 119.99992 * 179.97438 * 9 8 6 32 32 H 1.08000 * 122.90402 * 359.97438 * 17 16 14 33 33 H 1.08999 * 115.55519 * 154.35193 * 20 19 18 34 34 H 1.09000 * 117.50390 * 359.97438 * 21 20 19 35 35 H 1.09007 * 117.50088 * 145.02419 * 21 20 19 36 36 H 1.08996 * 117.50000 * 214.97767 * 22 20 19 37 37 H 1.09005 * 117.49828 * 359.97129 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1314 5 6 2.5232 1.7415 2.4570 6 6 2.6889 3.2315 2.6105 7 1 3.1036 3.8149 1.8018 8 6 2.3111 3.8499 3.7835 9 7 1.8057 3.1395 4.7682 10 14 2.5159 5.6968 3.9736 11 1 3.1023 6.2604 2.7312 12 1 1.1906 6.3189 4.2224 13 1 3.4181 5.9796 5.1188 14 6 4.2823 0.9798 0.9528 15 8 5.0343 0.9188 1.9076 16 6 4.7783 0.6700 -0.3924 17 6 4.0369 0.2144 -1.4331 18 7 4.7203 0.0142 -2.5318 19 6 5.9890 0.2681 -2.4979 20 6 6.9318 0.0977 -3.6612 21 6 6.3185 -0.2160 -5.0274 22 6 7.0708 -1.3040 -4.2584 23 16 6.4440 0.8240 -0.9467 24 1 -0.5400 -0.9353 0.0004 25 1 -0.5401 0.9352 -0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3585 2.1316 0.0895 28 1 2.6213 1.4025 -0.9314 29 1 1.4707 1.4799 2.5658 30 1 3.1058 1.2302 3.2233 31 1 1.5402 3.5745 5.5935 32 1 2.9749 0.0317 -1.3612 33 1 7.8217 0.7267 -3.6411 34 1 5.2332 -0.2996 -5.0847 35 1 6.8050 0.2067 -5.9065 36 1 8.0520 -1.5971 -4.6316 37 1 6.4806 -2.1031 -3.8096 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000582982109.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:02 Heat of formation + Delta-G solvation = 77.696199 kcal Electronic energy + Delta-G solvation = -20559.083011 eV Core-core repulsion = 17430.790076 eV Total energy + Delta-G solvation = -3128.292935 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.28390 -38.82129 -36.96808 -35.83846 -33.29515 -32.18561 -30.58978 -27.51264 -26.62788 -25.53125 -23.17960 -22.62925 -22.54953 -20.51666 -19.94747 -18.63162 -17.90178 -16.54032 -16.47152 -15.99403 -15.41201 -15.03811 -14.85764 -14.39824 -14.09347 -13.97930 -13.93799 -12.99245 -12.59441 -12.42607 -12.21699 -11.81903 -11.71902 -11.31929 -11.22186 -11.16855 -10.98430 -10.84727 -10.84144 -10.64530 -10.24194 -9.79740 -9.69859 -9.34082 -9.28534 -9.14695 -8.64266 -8.47236 -7.80470 -6.08442 -4.13717 0.41432 1.22487 1.77368 2.37385 2.57834 3.27622 3.35227 3.39052 3.58986 3.65630 3.91063 4.02293 4.41881 4.55861 4.59034 4.73565 4.95912 5.17924 5.18716 5.26226 5.32581 5.37802 5.38883 5.52914 5.55196 5.76556 5.93769 5.97041 6.10293 6.14481 6.73699 6.83978 6.99670 7.36945 7.44315 7.66484 7.87392 8.16835 8.23360 8.77699 8.94706 9.51423 10.99696 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.020086 B = 0.004308 C = 0.003857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.650550 B = 6498.218203 C = 7258.412194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.180 4.180 3 C 0.111 3.889 4 N -0.574 5.574 5 C 0.248 3.752 6 C -0.530 4.530 7 H 0.059 0.941 8 C 0.063 3.937 9 N -0.892 5.892 10 Si 0.899 3.101 11 H -0.273 1.273 12 H -0.283 1.283 13 H -0.282 1.282 14 C 0.579 3.421 15 O -0.533 6.533 16 C -0.270 4.270 17 C 0.056 3.944 18 N -0.477 5.477 19 C 0.055 3.945 20 C -0.096 4.096 21 C -0.149 4.149 22 C -0.156 4.156 23 S 0.221 5.779 24 H 0.097 0.903 25 H 0.101 0.899 26 H 0.108 0.892 27 H 0.090 0.910 28 H 0.093 0.907 29 H 0.038 0.962 30 H 0.047 0.953 31 H 0.263 0.737 32 H 0.200 0.800 33 H 0.127 0.873 34 H 0.109 0.891 35 H 0.100 0.900 36 H 0.103 0.897 37 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.509 -7.387 -18.310 20.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.200 4.200 3 C -0.013 4.013 4 N -0.304 5.304 5 C 0.129 3.871 6 C -0.569 4.569 7 H 0.077 0.923 8 C -0.140 4.140 9 N -0.531 5.531 10 Si 0.726 3.274 11 H -0.198 1.198 12 H -0.209 1.209 13 H -0.208 1.208 14 C 0.364 3.636 15 O -0.411 6.411 16 C -0.395 4.395 17 C -0.100 4.100 18 N -0.191 5.191 19 C -0.219 4.219 20 C -0.118 4.118 21 C -0.188 4.188 22 C -0.195 4.195 23 S 0.480 5.520 24 H 0.115 0.885 25 H 0.119 0.881 26 H 0.126 0.874 27 H 0.108 0.892 28 H 0.110 0.890 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.216 0.784 33 H 0.145 0.855 34 H 0.127 0.873 35 H 0.119 0.881 36 H 0.121 0.879 37 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 6.584 -7.222 -17.579 20.113 hybrid contribution -1.014 0.873 0.389 1.393 sum 5.571 -6.349 -17.190 19.153 Atomic orbital electron populations 1.23858 0.95688 1.02007 0.99033 1.23356 0.96566 0.98817 1.01223 1.21205 0.93549 0.95748 0.90782 1.48033 1.06900 1.63372 1.12102 1.19384 0.95404 0.95372 0.76942 1.21457 1.42259 0.92432 1.00732 0.92312 1.24927 0.94955 0.98627 0.95464 1.69947 1.42337 1.35676 1.05154 0.86433 0.77757 0.84954 0.78243 1.19769 1.20886 1.20802 1.16731 0.83041 0.78465 0.85354 1.90816 1.55754 1.53248 1.41287 1.26121 0.97564 1.14150 1.01706 1.23015 1.02168 0.98854 0.85951 1.66061 1.05119 1.19233 1.28690 1.26392 0.94107 1.02468 0.98978 1.20492 0.98709 1.01764 0.90843 1.23005 1.01518 1.01620 0.92662 1.23046 1.02462 0.91154 1.02847 1.83965 1.06882 1.57808 1.03315 0.88480 0.88068 0.87407 0.89204 0.88959 0.94438 0.93466 0.92686 0.78351 0.85500 0.87300 0.88138 0.87905 0.88271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.16 14.32 29.02 0.42 -1.75 16 2 C -0.18 -2.60 8.30 -36.02 -0.30 -2.90 16 3 C 0.11 1.86 5.36 -5.20 -0.03 1.83 16 4 N -0.57 -12.45 2.44 -177.98 -0.43 -12.88 16 5 C 0.25 6.49 5.21 -5.20 -0.03 6.46 16 6 C -0.53 -14.99 9.39 -34.44 -0.32 -15.31 16 7 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 8 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 9 N -0.89 -26.37 13.29 55.43 0.74 -25.64 16 10 Si 0.90 21.78 29.54 -169.99 -5.02 16.76 16 11 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 14 C 0.58 12.78 7.62 -12.85 -0.10 12.68 16 15 O -0.53 -13.84 16.61 5.20 0.09 -13.76 16 16 C -0.27 -4.79 6.11 -37.10 -0.23 -5.02 16 17 C 0.06 0.85 9.13 -18.86 -0.17 0.68 16 18 N -0.48 -6.85 9.98 -11.50 -0.11 -6.96 16 19 C 0.05 0.71 6.96 -13.29 -0.09 0.62 16 20 C -0.10 -0.91 6.28 -91.77 -0.58 -1.49 16 21 C -0.15 -1.21 10.12 -26.73 -0.27 -1.49 16 22 C -0.16 -1.23 10.23 -26.73 -0.27 -1.51 16 23 S 0.22 3.26 23.12 -107.50 -2.49 0.77 16 24 H 0.10 1.07 8.06 -52.49 -0.42 0.64 16 25 H 0.10 1.27 7.84 -52.49 -0.41 0.86 16 26 H 0.11 1.50 7.71 -52.48 -0.40 1.09 16 27 H 0.09 1.53 7.77 -51.93 -0.40 1.13 16 28 H 0.09 1.40 4.26 -51.93 -0.22 1.18 16 29 H 0.04 0.99 8.07 -51.93 -0.42 0.57 16 30 H 0.05 1.39 7.36 -51.93 -0.38 1.01 16 31 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 32 H 0.20 2.75 3.61 -52.49 -0.19 2.56 16 33 H 0.13 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.11 1.04 7.84 -51.93 -0.41 0.63 16 35 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 332.00 15.07 5.00 5.00 Total: -1.00 -32.98 332.00 -8.80 -41.78 By element: Atomic # 1 Polarization: 4.93 SS G_CDS: -4.50 Total: 0.43 kcal Atomic # 6 Polarization: -3.43 SS G_CDS: -2.07 Total: -5.50 kcal Atomic # 7 Polarization: -45.67 SS G_CDS: 0.19 Total: -45.49 kcal Atomic # 8 Polarization: -13.84 SS G_CDS: 0.09 Total: -13.76 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 16 Polarization: 3.26 SS G_CDS: -2.49 Total: 0.77 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.98 -8.80 -41.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582982109.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.473 kcal (2) G-P(sol) polarization free energy of solvation -32.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds