Wall clock time and date at job start Tue Mar 31 2020 06:48:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30991 * 1 3 3 C 1.50700 * 120.00349 * 2 1 4 4 N 1.46494 * 109.47460 * 124.99626 * 3 2 1 5 5 C 1.46500 * 120.00238 * 275.98540 * 4 3 2 6 6 C 1.50698 * 109.47246 * 270.00307 * 5 4 3 7 7 H 1.07998 * 119.99929 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00146 * 179.97438 * 6 5 4 9 9 N 1.31524 * 119.99998 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 120.00303 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47362 * 359.97438 * 10 8 6 12 12 H 1.48495 * 109.47808 * 120.00034 * 10 8 6 13 13 H 1.48508 * 109.47009 * 239.99841 * 10 8 6 14 14 C 1.34779 * 119.99827 * 95.98710 * 4 3 2 15 15 O 1.21686 * 119.99608 * 184.73444 * 14 4 3 16 16 C 1.46680 * 120.00042 * 4.73565 * 14 4 3 17 17 C 1.35657 * 126.13322 * 333.87277 * 16 14 4 18 18 N 1.30936 * 114.19500 * 180.02562 * 17 16 14 19 19 C 1.29425 * 117.36514 * 359.97438 * 18 17 16 20 20 C 1.50698 * 124.80934 * 179.97438 * 19 18 17 21 21 C 1.53002 * 117.49521 * 8.64840 * 20 19 18 22 22 C 1.52997 * 117.49907 * 300.02684 * 20 19 18 23 23 S 1.70954 * 110.39143 * 359.97438 * 19 18 17 24 24 H 1.08001 * 120.00114 * 180.02562 * 1 2 3 25 25 H 1.08000 * 120.00661 * 0.02562 * 1 2 3 26 26 H 1.08007 * 120.00319 * 179.97438 * 2 1 3 27 27 H 1.09000 * 109.46535 * 4.99708 * 3 2 1 28 28 H 1.09004 * 109.46957 * 245.00320 * 3 2 1 29 29 H 1.09004 * 109.46839 * 30.00097 * 5 4 3 30 30 H 1.08998 * 109.47163 * 149.99756 * 5 4 3 31 31 H 0.96998 * 119.99992 * 179.97438 * 9 8 6 32 32 H 1.08000 * 122.90402 * 359.97438 * 17 16 14 33 33 H 1.08999 * 115.55519 * 154.35193 * 20 19 18 34 34 H 1.09000 * 117.50390 * 359.97438 * 21 20 19 35 35 H 1.09007 * 117.50088 * 145.02419 * 21 20 19 36 36 H 1.08996 * 117.50000 * 214.97767 * 22 20 19 37 37 H 1.09005 * 117.49828 * 359.97129 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1314 5 6 2.5232 1.7415 2.4570 6 6 2.6889 3.2315 2.6105 7 1 3.1036 3.8149 1.8018 8 6 2.3111 3.8499 3.7835 9 7 1.8057 3.1395 4.7682 10 14 2.5159 5.6968 3.9736 11 1 3.1023 6.2604 2.7312 12 1 1.1906 6.3189 4.2224 13 1 3.4181 5.9796 5.1188 14 6 4.2823 0.9798 0.9528 15 8 5.0343 0.9188 1.9076 16 6 4.7783 0.6700 -0.3924 17 6 4.0369 0.2144 -1.4331 18 7 4.7203 0.0142 -2.5318 19 6 5.9890 0.2681 -2.4979 20 6 6.9318 0.0977 -3.6612 21 6 6.3185 -0.2160 -5.0274 22 6 7.0708 -1.3040 -4.2584 23 16 6.4440 0.8240 -0.9467 24 1 -0.5400 -0.9353 0.0004 25 1 -0.5401 0.9352 -0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3585 2.1316 0.0895 28 1 2.6213 1.4025 -0.9314 29 1 1.4707 1.4799 2.5658 30 1 3.1058 1.2302 3.2233 31 1 1.5402 3.5745 5.5935 32 1 2.9749 0.0317 -1.3612 33 1 7.8217 0.7267 -3.6411 34 1 5.2332 -0.2996 -5.0847 35 1 6.8050 0.2067 -5.9065 36 1 8.0520 -1.5971 -4.6316 37 1 6.4806 -2.1031 -3.8096 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000582982109.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:01 Heat of formation + Delta-G solvation = 57.331810 kcal Electronic energy + Delta-G solvation = -20559.966077 eV Core-core repulsion = 17430.790076 eV Total energy + Delta-G solvation = -3129.176001 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.61482 -40.27571 -37.84533 -37.38931 -35.21629 -33.80659 -32.00946 -29.33159 -27.87998 -26.96767 -25.06033 -23.67604 -23.22320 -21.99277 -21.11873 -19.85250 -19.20613 -18.66692 -17.83447 -17.31325 -16.73144 -16.55627 -16.16283 -15.97663 -15.44853 -15.32631 -15.00651 -14.48555 -14.33761 -13.99628 -13.39469 -13.21750 -13.04253 -12.98631 -12.63114 -12.44796 -12.33936 -12.27320 -12.26427 -11.86589 -11.69022 -11.58916 -11.13051 -10.68033 -10.66629 -10.52160 -10.45079 -9.82612 -9.59714 -8.26364 -6.41511 -0.80668 0.02319 0.59496 1.22773 1.34532 1.36198 1.37791 1.49484 2.01018 2.31070 2.41774 2.85479 3.03288 3.04582 3.54942 3.73099 3.89781 3.96099 4.08105 4.10081 4.12934 4.26098 4.31242 4.75774 4.83365 4.85065 4.94945 4.98395 4.99952 5.15845 5.17843 5.33522 5.41442 5.63582 5.69108 5.84794 5.99574 6.48219 6.49376 6.66523 7.11196 7.31065 8.81463 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.020086 B = 0.004308 C = 0.003857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.650550 B = 6498.218203 C = 7258.412194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.202 4.202 3 C 0.111 3.889 4 N -0.579 5.579 5 C 0.266 3.734 6 C -0.548 4.548 7 H 0.052 0.948 8 C 0.012 3.988 9 N -0.925 5.925 10 Si 0.969 3.031 11 H -0.268 1.268 12 H -0.267 1.267 13 H -0.280 1.280 14 C 0.576 3.424 15 O -0.589 6.589 16 C -0.317 4.317 17 C 0.085 3.915 18 N -0.490 5.490 19 C 0.084 3.916 20 C -0.119 4.119 21 C -0.140 4.140 22 C -0.143 4.143 23 S 0.221 5.779 24 H 0.123 0.877 25 H 0.104 0.896 26 H 0.114 0.886 27 H 0.084 0.916 28 H 0.110 0.890 29 H 0.030 0.970 30 H 0.002 0.998 31 H 0.269 0.731 32 H 0.212 0.788 33 H 0.152 0.848 34 H 0.094 0.906 35 H 0.128 0.872 36 H 0.131 0.869 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.766 -7.190 -21.290 23.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.221 4.221 3 C -0.011 4.011 4 N -0.308 5.308 5 C 0.145 3.855 6 C -0.586 4.586 7 H 0.071 0.929 8 C -0.188 4.188 9 N -0.564 5.564 10 Si 0.793 3.207 11 H -0.193 1.193 12 H -0.192 1.192 13 H -0.206 1.206 14 C 0.364 3.636 15 O -0.472 6.472 16 C -0.442 4.442 17 C -0.073 4.073 18 N -0.204 5.204 19 C -0.190 4.190 20 C -0.141 4.141 21 C -0.179 4.179 22 C -0.182 4.182 23 S 0.482 5.518 24 H 0.141 0.859 25 H 0.123 0.877 26 H 0.132 0.868 27 H 0.103 0.897 28 H 0.127 0.873 29 H 0.048 0.952 30 H 0.020 0.980 31 H 0.078 0.922 32 H 0.228 0.772 33 H 0.169 0.831 34 H 0.112 0.888 35 H 0.146 0.854 36 H 0.150 0.850 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 6.819 -7.029 -20.595 22.805 hybrid contribution -1.089 0.715 1.178 1.756 sum 5.731 -6.314 -19.418 21.208 Atomic orbital electron populations 1.24127 0.95104 1.03407 0.95848 1.23204 0.97113 0.97691 1.04044 1.21415 0.92938 0.97150 0.89581 1.47980 1.07971 1.63035 1.11814 1.18817 0.93996 0.94170 0.78532 1.21691 1.42556 0.93385 1.01003 0.92925 1.25835 0.94323 1.03679 0.94945 1.70057 1.42864 1.37791 1.05696 0.85354 0.78333 0.78881 0.78167 1.19252 1.19175 1.20587 1.17228 0.82514 0.77263 0.86596 1.90761 1.57060 1.55889 1.43468 1.25607 0.99700 1.18657 1.00212 1.23194 1.02595 0.96196 0.85285 1.66209 1.05674 1.20642 1.27895 1.27164 0.94140 0.98678 0.98969 1.20878 0.99112 1.03948 0.90124 1.23108 1.00976 1.01286 0.92530 1.23161 1.03711 0.89776 1.01596 1.83910 1.05324 1.58302 1.04305 0.85934 0.87749 0.86848 0.89730 0.87273 0.95156 0.97992 0.92244 0.77200 0.83056 0.88775 0.85402 0.85043 0.89516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.54 14.32 67.79 0.97 -2.57 16 2 C -0.20 -5.71 8.30 25.66 0.21 -5.49 16 3 C 0.11 3.77 5.36 85.63 0.46 4.23 16 4 N -0.58 -26.31 2.44 -835.24 -2.04 -28.35 16 5 C 0.27 14.71 5.21 85.63 0.45 15.16 16 6 C -0.55 -32.10 9.39 25.60 0.24 -31.86 16 7 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 8 C 0.01 0.68 5.46 84.65 0.46 1.14 16 9 N -0.92 -56.02 13.29 21.45 0.28 -55.74 16 10 Si 0.97 45.13 29.54 68.60 2.03 47.16 16 11 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 12 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 13 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 14 C 0.58 26.79 7.62 86.45 0.66 27.45 16 15 O -0.59 -32.75 16.61 -4.30 -0.07 -32.82 16 16 C -0.32 -11.47 6.11 23.88 0.15 -11.33 16 17 C 0.08 2.54 9.13 84.23 0.77 3.30 16 18 N -0.49 -13.31 9.98 -190.31 -1.90 -15.20 16 19 C 0.08 2.04 6.96 88.46 0.62 2.65 16 20 C -0.12 -1.87 6.28 -11.54 -0.07 -1.94 16 21 C -0.14 -1.77 10.12 30.60 0.31 -1.46 16 22 C -0.14 -1.75 10.23 30.59 0.31 -1.44 16 23 S 0.22 6.47 23.12 -56.49 -1.31 5.16 16 24 H 0.12 2.35 8.06 -2.91 -0.02 2.32 16 25 H 0.10 2.45 7.84 -2.91 -0.02 2.43 16 26 H 0.11 3.09 7.71 -2.91 -0.02 3.07 16 27 H 0.08 2.92 7.77 -2.39 -0.02 2.90 16 28 H 0.11 3.28 4.26 -2.38 -0.01 3.27 16 29 H 0.03 1.69 8.07 -2.39 -0.02 1.67 16 30 H 0.00 0.13 7.36 -2.39 -0.02 0.11 16 31 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 32 H 0.21 5.64 3.61 -2.91 -0.01 5.63 16 33 H 0.15 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.09 1.53 7.84 -2.39 -0.02 1.51 16 35 H 0.13 0.97 8.14 -2.38 -0.02 0.95 16 36 H 0.13 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 Total: -1.00 -75.07 332.00 3.61 -71.46 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: 1.09 Total: 10.50 kcal Atomic # 6 Polarization: -7.70 SS G_CDS: 5.53 Total: -2.16 kcal Atomic # 7 Polarization: -95.64 SS G_CDS: -3.65 Total: -99.29 kcal Atomic # 8 Polarization: -32.75 SS G_CDS: -0.07 Total: -32.82 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Atomic # 16 Polarization: 6.47 SS G_CDS: -1.31 Total: 5.16 kcal Total: -75.07 3.61 -71.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582982109.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.792 kcal (2) G-P(sol) polarization free energy of solvation -75.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds