Wall clock time and date at job start Tue Mar 31 2020 06:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86806 * 120.00392 * 2 1 4 4 H 1.48495 * 109.47111 * 269.99801 * 3 2 1 5 5 H 1.48502 * 109.46867 * 30.00017 * 3 2 1 6 6 H 1.48505 * 109.47073 * 149.99650 * 3 2 1 7 7 C 1.37877 * 119.99964 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00218 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00374 * 180.02562 * 7 2 1 10 10 C 1.53001 * 109.47351 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47140 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.47136 * 179.97438 * 11 10 9 13 13 C 1.50692 * 109.47131 * 180.02562 * 12 11 10 14 14 N 1.31127 * 126.55148 * 90.00227 * 13 12 11 15 15 C 1.34498 * 105.61513 * 180.02562 * 14 13 12 16 16 C 1.50703 * 126.28894 * 179.97438 * 15 14 13 17 17 C 1.50701 * 109.47064 * 89.99988 * 16 15 14 18 18 C 1.33392 * 125.19966 * 89.72188 * 17 16 15 19 19 C 1.38427 * 114.91904 * 179.86047 * 18 17 16 20 20 C 1.33393 * 114.92075 * 0.42909 * 19 18 17 21 21 S 1.75876 * 125.20411 * 270.02712 * 17 16 15 22 22 N 1.29955 * 107.42503 * 0.24307 * 15 14 13 23 23 O 1.21298 * 110.24419 * 359.57536 * 22 15 14 24 24 H 0.97004 * 119.99789 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.47397 * 59.99527 * 9 7 2 26 26 H 1.09006 * 109.46884 * 299.99536 * 9 7 2 27 27 H 1.09000 * 109.47022 * 59.99978 * 10 9 7 28 28 H 1.08998 * 109.46734 * 299.99300 * 10 9 7 29 29 H 1.08997 * 109.46542 * 59.99869 * 11 10 9 30 30 H 1.08993 * 109.47053 * 299.99958 * 11 10 9 31 31 H 1.09004 * 109.46900 * 60.00045 * 12 11 10 32 32 H 1.09000 * 109.47486 * 300.00458 * 12 11 10 33 33 H 1.09002 * 109.47152 * 330.00081 * 16 15 14 34 34 H 1.09001 * 109.46980 * 210.00181 * 16 15 14 35 35 H 1.08004 * 122.53965 * 0.02562 * 18 17 16 36 36 H 1.08001 * 122.54146 * 180.19761 * 19 18 17 37 37 H 1.07999 * 125.20313 * 179.79381 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0001 11 6 5.5515 -2.6367 -0.0001 12 6 6.0614 -4.0792 0.0004 13 6 7.5683 -4.0793 0.0010 14 7 8.3489 -4.0791 1.0547 15 6 9.6052 -4.0787 0.5745 16 6 10.8720 -4.0778 1.3908 17 6 11.2950 -5.4983 1.6634 18 6 12.0970 -6.2249 0.8835 19 6 12.3488 -7.5073 1.3397 20 6 11.7441 -7.8252 2.4854 21 16 10.8006 -6.4542 3.0545 22 7 9.5261 -4.0733 -0.7226 23 8 8.3647 -4.0790 -1.0723 24 1 -0.4850 0.8401 -0.0004 25 1 3.8745 -0.6809 0.8905 26 1 3.8752 -0.6798 -0.8895 27 1 3.6584 -3.1503 -0.8903 28 1 3.6578 -3.1506 0.8897 29 1 5.9147 -2.1230 0.8899 30 1 5.9148 -2.1229 -0.8900 31 1 5.6980 -4.5934 -0.8894 32 1 5.6981 -4.5928 0.8905 33 1 10.6951 -3.5637 2.3356 34 1 11.6592 -3.5637 0.8393 35 1 12.5200 -5.8407 -0.0329 36 1 12.9836 -8.1994 0.8064 37 1 11.8222 -8.7785 2.9870 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588320749.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:48 Heat of formation + Delta-G solvation = 58.179022 kcal Electronic energy + Delta-G solvation = -19400.245548 eV Core-core repulsion = 16271.106284 eV Total energy + Delta-G solvation = -3129.139263 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -46.64499 -39.01605 -37.47290 -36.94382 -35.22602 -34.02849 -32.59050 -31.16114 -28.24213 -27.65968 -25.09315 -24.43239 -23.59418 -22.08556 -21.76079 -20.25068 -19.23031 -18.79885 -18.50265 -17.97402 -16.51695 -16.42365 -16.32192 -16.10596 -15.49557 -14.75111 -14.41335 -14.38532 -14.19295 -14.02743 -13.65472 -13.62512 -13.50006 -13.42148 -12.85569 -12.63466 -12.58116 -12.37307 -12.14070 -12.02852 -11.74348 -11.70865 -11.55840 -11.32574 -11.24662 -10.85569 -10.73078 -9.74448 -9.46748 -8.26521 -6.29616 -0.09958 0.11192 0.62195 1.03200 1.15477 1.37351 1.39174 1.50830 1.73529 1.80860 2.38279 2.64273 2.98736 3.09318 3.67019 3.83969 4.02767 4.08065 4.17563 4.24854 4.30133 4.47221 4.60920 4.62062 4.69986 4.75015 4.80882 4.85444 4.91383 5.11994 5.13886 5.18670 5.25364 5.28714 5.49303 5.62874 5.69099 5.71886 6.33052 6.79539 7.09548 7.35089 8.90175 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.034241 B = 0.002407 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.530109 B =11627.794550 C =11760.100137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.000 4.000 3 Si 0.949 3.051 4 H -0.267 1.267 5 H -0.286 1.286 6 H -0.247 1.247 7 C -0.530 4.530 8 H 0.036 0.964 9 C -0.017 4.017 10 C -0.094 4.094 11 C -0.106 4.106 12 C -0.023 4.023 13 C 0.201 3.799 14 N -0.501 5.501 15 C 0.171 3.829 16 C 0.045 3.955 17 C -0.197 4.197 18 C -0.129 4.129 19 C -0.146 4.146 20 C -0.210 4.210 21 S 0.097 5.903 22 N -0.399 5.399 23 O 0.069 5.931 24 H 0.265 0.735 25 H 0.016 0.984 26 H 0.018 0.982 27 H 0.063 0.937 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.126 0.874 32 H 0.122 0.878 33 H 0.115 0.885 34 H 0.127 0.873 35 H 0.149 0.851 36 H 0.163 0.837 37 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.197 -14.267 3.288 31.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.196 4.196 3 Si 0.773 3.227 4 H -0.192 1.192 5 H -0.212 1.212 6 H -0.171 1.171 7 C -0.568 4.568 8 H 0.054 0.946 9 C -0.055 4.055 10 C -0.131 4.131 11 C -0.145 4.145 12 C -0.062 4.062 13 C -0.019 4.019 14 N -0.235 5.235 15 C -0.103 4.103 16 C 0.005 3.995 17 C -0.316 4.316 18 C -0.160 4.160 19 C -0.176 4.176 20 C -0.345 4.345 21 S 0.360 5.640 22 N -0.109 5.109 23 O 0.012 5.988 24 H 0.074 0.926 25 H 0.034 0.966 26 H 0.036 0.964 27 H 0.081 0.919 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.145 0.855 32 H 0.140 0.860 33 H 0.133 0.867 34 H 0.145 0.855 35 H 0.167 0.833 36 H 0.180 0.820 37 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 27.939 -13.910 4.471 31.529 hybrid contribution 0.346 0.537 -1.265 1.418 sum 28.286 -13.373 3.206 31.451 Atomic orbital electron populations 1.70072 1.08272 1.28014 1.53039 1.26036 0.95607 1.03546 0.94420 0.85673 0.79481 0.78448 0.79125 1.19221 1.21243 1.17099 1.21574 0.92365 0.93101 1.49721 0.94592 1.19584 0.93679 0.95816 0.96388 1.21306 0.93048 0.96926 1.01858 1.21538 0.95903 0.94305 1.02737 1.20495 0.77962 0.99874 1.07861 1.29340 0.99292 0.93278 0.79952 1.71935 1.00496 1.21527 1.29529 1.26025 0.95665 1.00135 0.88440 1.18451 0.89166 0.92291 0.99605 1.24181 1.06346 1.00071 1.00964 1.20452 0.99837 0.94550 1.01136 1.20442 1.03049 0.96994 0.97106 1.26053 1.03392 1.03406 1.01664 1.84569 1.48981 1.05944 1.24459 1.74591 0.98064 1.22207 1.16007 1.85274 1.11402 1.65918 1.36175 0.92639 0.96572 0.96379 0.91875 0.92374 0.91995 0.91215 0.85542 0.86024 0.86712 0.85532 0.83304 0.82004 0.79543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.85 13.96 21.45 0.30 -59.55 16 2 C 0.00 0.01 5.47 84.66 0.46 0.48 16 3 Si 0.95 44.30 27.47 68.60 1.88 46.18 16 4 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 5 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 6 H -0.25 -10.73 6.54 99.48 0.65 -10.07 16 7 C -0.53 -30.07 9.66 25.60 0.25 -29.83 16 8 H 0.04 2.23 7.99 -2.91 -0.02 2.20 16 9 C -0.02 -0.77 4.04 29.85 0.12 -0.65 16 10 C -0.09 -3.21 5.15 30.60 0.16 -3.05 16 11 C -0.11 -2.79 5.20 30.60 0.16 -2.63 16 12 C -0.02 -0.48 5.84 29.84 0.17 -0.30 16 13 C 0.20 4.88 7.77 88.38 0.69 5.57 16 14 N -0.50 -13.23 11.55 -303.20 -3.50 -16.73 16 15 C 0.17 4.16 7.45 138.46 1.03 5.20 16 16 C 0.05 0.81 6.34 29.10 0.18 0.99 16 17 C -0.20 -3.57 5.75 24.59 0.14 -3.43 16 18 C -0.13 -2.09 10.05 21.22 0.21 -1.88 16 19 C -0.15 -2.03 10.18 21.22 0.22 -1.81 16 20 C -0.21 -2.91 11.23 66.72 0.75 -2.16 16 21 S 0.10 1.68 23.33 -56.49 -1.32 0.37 16 22 N -0.40 -10.49 12.16 -60.31 -0.73 -11.22 16 23 O 0.07 1.77 11.31 74.83 0.85 2.61 16 24 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 25 H 0.02 0.72 7.20 -2.38 -0.02 0.70 16 26 H 0.02 0.78 7.57 -2.38 -0.02 0.77 16 27 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 28 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.13 2.02 8.14 -2.38 -0.02 2.00 16 32 H 0.12 2.27 8.14 -2.39 -0.02 2.25 16 33 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.13 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.15 2.08 8.06 -2.91 -0.02 2.06 16 36 H 0.16 1.46 8.06 -2.91 -0.02 1.44 16 37 H 0.19 1.61 8.06 -2.91 -0.02 1.58 16 Total: -1.00 -69.89 335.03 3.03 -66.86 By element: Atomic # 1 Polarization: 3.99 SS G_CDS: 1.01 Total: 5.00 kcal Atomic # 6 Polarization: -38.05 SS G_CDS: 4.54 Total: -33.51 kcal Atomic # 7 Polarization: -83.57 SS G_CDS: -3.94 Total: -87.51 kcal Atomic # 8 Polarization: 1.77 SS G_CDS: 0.85 Total: 2.61 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 1.88 Total: 46.18 kcal Atomic # 16 Polarization: 1.68 SS G_CDS: -1.32 Total: 0.37 kcal Total: -69.89 3.03 -66.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588320749.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.041 kcal (2) G-P(sol) polarization free energy of solvation -69.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds