Wall clock time and date at job start Tue Mar 31 2020 06:35:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.32623 * 123.42539 * 2 1 4 4 S 1.75466 * 110.77829 * 180.25238 * 3 2 1 5 5 C 1.70439 * 92.52321 * 359.71589 * 4 3 2 6 6 N 1.38803 * 124.64768 * 180.02562 * 5 4 3 7 7 C 1.34777 * 119.99797 * 359.97138 * 6 5 4 8 8 O 1.21287 * 120.00098 * 0.02562 * 7 6 5 9 9 C 1.50706 * 119.99576 * 180.02562 * 7 6 5 10 10 C 1.52995 * 109.46668 * 180.02562 * 9 7 6 11 11 C 1.53003 * 109.47200 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.47485 * 180.02562 * 11 10 9 13 13 C 1.50693 * 109.47172 * 179.97438 * 12 11 10 14 14 H 1.08003 * 120.00042 * 359.97438 * 13 12 11 15 15 C 1.37871 * 120.00183 * 179.97438 * 13 12 11 16 16 N 1.31521 * 120.00222 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00389 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47283 * 59.99733 * 17 15 13 19 19 H 1.48505 * 109.47311 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47043 * 300.00242 * 17 15 13 21 21 C 1.36983 * 110.70656 * 359.97438 * 5 4 3 22 22 C 1.43205 * 123.58034 * 180.02562 * 21 5 4 23 23 N 3.57660 * 86.68728 * 179.74390 * 2 1 3 24 24 H 1.09001 * 109.47057 * 270.25384 * 1 2 3 25 25 H 1.08998 * 109.47117 * 30.25221 * 1 2 3 26 26 H 1.09000 * 109.47160 * 150.25389 * 1 2 3 27 27 H 1.07997 * 124.60939 * 359.97085 * 3 2 1 28 28 H 0.96997 * 120.00166 * 179.97438 * 6 5 4 29 29 H 1.09001 * 109.47185 * 299.99925 * 9 7 6 30 30 H 1.08989 * 109.46998 * 60.00125 * 9 7 6 31 31 H 1.09001 * 109.46961 * 299.99701 * 10 9 7 32 32 H 1.08995 * 109.47925 * 59.99820 * 10 9 7 33 33 H 1.09001 * 109.46732 * 299.99611 * 11 10 9 34 34 H 1.08996 * 109.47511 * 59.99204 * 11 10 9 35 35 H 1.09001 * 109.46816 * 299.99556 * 12 11 10 36 36 H 1.08996 * 109.47399 * 59.99131 * 12 11 10 37 37 H 0.96994 * 120.00665 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2375 1.1069 0.0000 4 16 3.9496 0.7227 -0.0072 5 6 3.6500 -0.9551 -0.0018 6 7 4.6354 -1.9327 -0.0036 7 6 5.9359 -1.5786 -0.0107 8 8 6.2450 -0.4058 -0.0150 9 6 7.0057 -2.6401 -0.0132 10 6 8.3836 -1.9751 -0.0208 11 6 9.4699 -3.0526 -0.0240 12 6 10.8478 -2.3878 -0.0310 13 6 11.9176 -3.4491 -0.0335 14 1 11.6423 -4.4934 -0.0301 15 6 13.2479 -3.0870 -0.0402 16 7 13.5833 -1.8152 -0.0449 17 14 14.5741 -4.4025 -0.0427 18 1 14.4273 -5.2512 -1.2524 19 1 15.9116 -3.7571 -0.0508 20 1 14.4378 -5.2450 1.1725 21 6 2.3035 -1.2067 0.0058 22 6 1.7441 -2.5249 0.0124 23 7 1.3003 -3.5706 0.0160 24 1 -0.3633 0.0046 1.0277 25 1 -0.3633 0.8877 -0.5177 26 1 -0.3633 -0.8922 -0.5099 27 1 1.8336 2.1085 -0.0005 28 1 4.3882 -2.8706 0.0002 29 1 6.9060 -3.2586 0.8788 30 1 6.8975 -3.2628 -0.9011 31 1 8.4835 -1.3564 -0.9126 32 1 8.4916 -1.3526 0.8673 33 1 9.3701 -3.6717 0.8675 34 1 9.3618 -3.6749 -0.9123 35 1 10.9479 -1.7684 -0.9223 36 1 10.9556 -1.7658 0.8576 37 1 14.5192 -1.5604 -0.0500 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589035319.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:48 Heat of formation + Delta-G solvation = -5.881804 kcal Electronic energy + Delta-G solvation = -19282.367623 eV Core-core repulsion = 16150.450474 eV Total energy + Delta-G solvation = -3131.917149 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.72308 -38.77228 -36.24750 -35.50372 -35.02892 -32.75940 -30.92087 -29.67644 -28.03220 -26.07987 -24.24958 -22.70440 -21.37165 -20.26321 -20.12367 -18.80922 -17.94256 -16.40704 -16.30196 -16.15226 -15.68729 -14.96073 -14.65855 -14.37708 -14.23303 -14.13114 -13.53848 -13.45229 -13.13414 -12.80377 -12.74594 -12.51129 -12.27142 -12.09355 -11.86636 -11.73476 -11.32762 -11.06406 -11.02230 -10.64951 -10.58472 -10.51718 -10.09587 -9.70221 -9.32445 -9.06715 -8.60633 -8.45023 -8.34391 -5.99332 -4.02169 0.39516 0.95354 1.61677 1.69462 2.20637 2.41395 2.47752 3.19693 3.32781 3.37486 3.39540 3.81220 4.39513 4.45995 4.47521 4.76824 5.03789 5.09741 5.10630 5.20659 5.25624 5.36091 5.41932 5.57758 5.62913 5.93856 5.97278 5.99184 6.12141 6.39702 6.62004 6.70383 6.88575 7.11129 7.25770 7.51082 7.68139 7.82823 8.00939 8.42567 9.05097 9.61807 11.11874 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.037303 B = 0.002425 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.422698 B =11545.773954 C =12259.838453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.041 4.041 3 C -0.293 4.293 4 S 0.326 5.674 5 C 0.070 3.930 6 N -0.639 5.639 7 C 0.507 3.493 8 O -0.490 6.490 9 C -0.134 4.134 10 C -0.105 4.105 11 C -0.111 4.111 12 C 0.021 3.979 13 C -0.522 4.522 14 H 0.054 0.946 15 C 0.056 3.944 16 N -0.895 5.895 17 Si 0.892 3.108 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 C -0.134 4.134 22 C 0.279 3.721 23 N -0.429 5.429 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.064 0.936 27 H 0.171 0.829 28 H 0.420 0.580 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.048 0.952 34 H 0.048 0.952 35 H 0.016 0.984 36 H 0.016 0.984 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.548 5.518 0.118 26.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.053 4.053 3 C -0.429 4.429 4 S 0.589 5.411 5 C -0.153 4.153 6 N -0.283 5.283 7 C 0.296 3.704 8 O -0.364 6.364 9 C -0.174 4.174 10 C -0.143 4.143 11 C -0.149 4.149 12 C -0.016 4.016 13 C -0.561 4.561 14 H 0.072 0.928 15 C -0.145 4.145 16 N -0.534 5.534 17 Si 0.720 3.280 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.203 1.203 21 C -0.155 4.155 22 C -0.036 4.036 23 N -0.107 5.107 24 H 0.093 0.907 25 H 0.093 0.907 26 H 0.083 0.917 27 H 0.188 0.812 28 H 0.257 0.743 29 H 0.119 0.881 30 H 0.119 0.881 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.035 0.965 36 H 0.035 0.965 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -24.423 5.712 0.110 25.082 hybrid contribution -0.562 -1.784 0.011 1.871 sum -24.985 3.927 0.121 25.292 Atomic orbital electron populations 1.20527 0.89323 1.03028 1.02756 1.19282 0.96444 0.89200 1.00353 1.25814 1.00218 1.02565 1.14262 1.84537 0.99775 0.89190 1.67596 1.22172 0.90717 0.99123 1.03251 1.43285 1.04717 1.09180 1.71073 1.21797 0.82286 0.91887 0.74422 1.90647 1.80109 1.19327 1.46326 1.21857 0.93844 0.96643 1.05033 1.21520 0.90399 0.99014 1.03373 1.21658 0.96206 0.96697 1.00289 1.19084 0.89345 0.95852 0.97366 1.21224 0.91109 0.93014 1.50718 0.92806 1.25035 0.98828 0.95273 0.95382 1.69955 1.17422 1.15324 1.50714 0.86668 0.80955 0.81841 0.78573 1.20278 1.21292 1.20272 1.15824 0.89276 0.87727 1.22674 1.24907 0.93861 0.91922 0.92958 1.81289 1.07238 1.11045 1.11104 0.90694 0.90669 0.91683 0.81184 0.74279 0.88110 0.88107 0.91385 0.91379 0.93315 0.93307 0.96535 0.96539 0.92935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.59 9.95 36.00 0.36 -0.23 16 2 C -0.04 -0.33 6.00 -104.02 -0.62 -0.95 16 3 C -0.29 -2.12 10.89 28.83 0.31 -1.81 16 4 S 0.33 3.03 19.96 -107.50 -2.15 0.88 16 5 C 0.07 0.69 6.98 -14.85 -0.10 0.59 16 6 N -0.64 -6.05 5.37 -11.61 -0.06 -6.12 16 7 C 0.51 5.81 7.79 -10.98 -0.09 5.72 16 8 O -0.49 -6.96 13.41 5.55 0.07 -6.88 16 9 C -0.13 -1.48 5.70 -27.88 -0.16 -1.64 16 10 C -0.11 -1.65 4.50 -26.73 -0.12 -1.77 16 11 C -0.11 -2.12 5.15 -26.73 -0.14 -2.26 16 12 C 0.02 0.52 4.97 -27.89 -0.14 0.38 16 13 C -0.52 -14.67 9.11 -34.45 -0.31 -14.99 16 14 H 0.05 1.45 7.74 -52.48 -0.41 1.05 16 15 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 16 N -0.89 -26.96 13.29 55.43 0.74 -26.22 16 17 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 C -0.13 -1.27 5.88 -105.92 -0.62 -1.90 16 22 C 0.28 2.98 14.22 -22.47 -0.32 2.66 16 23 N -0.43 -5.32 18.54 41.83 0.78 -4.55 16 24 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 25 H 0.07 0.33 8.13 -51.93 -0.42 -0.10 16 26 H 0.06 0.43 7.68 -51.93 -0.40 0.03 16 27 H 0.17 0.81 8.06 -52.49 -0.42 0.39 16 28 H 0.42 3.15 8.15 -40.82 -0.33 2.82 16 29 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.10 0.93 8.14 -51.94 -0.42 0.51 16 31 H 0.07 1.13 8.10 -51.93 -0.42 0.71 16 32 H 0.07 1.13 8.10 -51.93 -0.42 0.71 16 33 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 339.30 15.07 5.11 5.11 Total: -1.00 -32.54 339.30 -7.50 -40.03 By element: Atomic # 1 Polarization: 0.79 SS G_CDS: -4.92 Total: -4.13 kcal Atomic # 6 Polarization: -12.63 SS G_CDS: -2.05 Total: -14.68 kcal Atomic # 7 Polarization: -38.33 SS G_CDS: 1.45 Total: -36.88 kcal Atomic # 8 Polarization: -6.96 SS G_CDS: 0.07 Total: -6.88 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: 3.03 SS G_CDS: -2.15 Total: 0.88 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.54 -7.50 -40.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589035319.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.153 kcal (2) G-P(sol) polarization free energy of solvation -32.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds