Wall clock time and date at job start Tue Mar 31 2020 06:35:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33153 * 123.13044 * 2 1 4 4 S 1.75735 * 109.74716 * 180.02562 * 3 2 1 5 5 C 1.70640 * 91.69004 * 359.81955 * 4 3 2 6 6 C 1.34453 * 110.51941 * 0.31190 * 5 4 3 7 7 C 1.48228 * 122.84814 * 179.89443 * 6 5 4 8 8 N 1.30871 * 126.42824 * 179.68378 * 7 6 5 9 9 O 1.21293 * 110.08048 * 180.02562 * 8 7 6 10 10 C 1.33675 * 110.04128 * 0.02562 * 9 8 7 11 11 C 1.50700 * 126.41920 * 179.97438 * 10 9 8 12 12 C 1.52996 * 109.47020 * 270.02049 * 11 10 9 13 13 C 1.53008 * 109.47216 * 180.02562 * 12 11 10 14 14 C 1.52996 * 109.47216 * 180.02562 * 13 12 11 15 15 C 1.50700 * 109.47020 * 179.97438 * 14 13 12 16 16 H 1.07993 * 120.00451 * 0.02562 * 15 14 13 17 17 C 1.37878 * 119.99846 * 179.97438 * 15 14 13 18 18 N 1.31515 * 120.00083 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99960 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47051 * 59.99949 * 19 17 15 21 21 H 1.48506 * 109.47164 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.46968 * 300.00120 * 19 17 15 23 23 N 1.30963 * 107.15411 * 359.97438 * 10 9 8 24 24 H 1.09002 * 109.47153 * 269.96443 * 1 2 3 25 25 H 1.08997 * 109.47406 * 29.96490 * 1 2 3 26 26 H 1.09002 * 109.47604 * 149.96192 * 1 2 3 27 27 H 1.08001 * 125.12577 * 0.05213 * 3 2 1 28 28 H 1.08002 * 124.74035 * 180.20467 * 5 4 3 29 29 H 1.08994 * 109.47609 * 30.02586 * 11 10 9 30 30 H 1.09009 * 109.46879 * 150.02500 * 11 10 9 31 31 H 1.09000 * 109.47285 * 300.00292 * 12 11 10 32 32 H 1.08999 * 109.47335 * 60.00848 * 12 11 10 33 33 H 1.09000 * 109.46909 * 300.00127 * 13 12 11 34 34 H 1.09000 * 109.47117 * 59.99930 * 13 12 11 35 35 H 1.08994 * 109.47369 * 300.00289 * 14 13 12 36 36 H 1.09009 * 109.46926 * 60.00085 * 14 13 12 37 37 H 0.97004 * 119.99943 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2347 1.1151 0.0000 4 16 3.9443 0.7083 -0.0007 5 6 3.5985 -0.9627 0.0044 6 6 2.2699 -1.1690 -0.0005 7 6 1.6665 -2.5229 0.0000 8 7 0.3884 -2.8041 0.0014 9 8 0.2264 -4.0062 0.0019 10 6 1.4098 -4.6278 0.0014 11 6 1.6379 -6.1175 0.0024 12 6 1.7156 -6.6206 1.4452 13 6 1.9478 -8.1329 1.4462 14 6 2.0250 -8.6361 2.8890 15 6 2.2530 -10.1258 2.8899 16 1 2.3352 -10.6601 1.9550 17 6 2.3578 -10.8063 4.0844 18 7 2.2583 -10.1556 5.2229 19 14 2.6413 -12.6528 4.0856 20 1 3.9146 -12.9585 3.3856 21 1 2.7160 -13.1412 5.4861 22 1 1.5177 -13.3264 3.3862 23 7 2.3337 -3.6997 0.0000 24 1 -0.3633 -0.0006 1.0277 25 1 -0.3634 0.8903 -0.5133 26 1 -0.3634 -0.8896 -0.5144 27 1 1.8346 2.1182 0.0008 28 1 4.3429 -1.7452 0.0089 29 1 0.8130 -6.6117 -0.5108 30 1 2.5725 -6.3423 -0.5117 31 1 2.5406 -6.1263 1.9584 32 1 0.7811 -6.3959 1.9592 33 1 1.1231 -8.6274 0.9329 34 1 2.8825 -8.3574 0.9323 35 1 2.8493 -8.1416 3.4027 36 1 1.0900 -8.4117 3.4025 37 1 2.3317 -10.6345 6.0633 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589149356.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:46 Heat of formation + Delta-G solvation = 73.813055 kcal Electronic energy + Delta-G solvation = -19571.709335 eV Core-core repulsion = 16443.248014 eV Total energy + Delta-G solvation = -3128.461321 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -45.50572 -38.99168 -36.18078 -35.26324 -33.32682 -31.94917 -31.38332 -29.43715 -27.88421 -25.78279 -25.10553 -23.18537 -22.51902 -21.55792 -20.18725 -18.85590 -18.03646 -17.84888 -17.28355 -16.21764 -15.56251 -15.12404 -14.75651 -14.40289 -14.38740 -13.75891 -13.39391 -13.02581 -12.89612 -12.66203 -12.62105 -12.37635 -12.07951 -11.92742 -11.73326 -11.65709 -11.25547 -11.05212 -10.95287 -10.65039 -10.60312 -10.58512 -10.20201 -9.71523 -9.32812 -9.08162 -9.02717 -8.55360 -8.34522 -5.99583 -4.02293 0.44678 1.15908 1.26184 1.59570 1.77432 2.81384 2.86970 3.33519 3.38116 3.40237 3.49604 4.00050 4.45912 4.56194 4.73714 4.97712 5.12201 5.19053 5.21503 5.22042 5.36201 5.44938 5.46811 5.62807 5.70649 5.77278 5.85536 5.99147 6.06037 6.09870 6.21986 6.34279 6.67254 6.82381 7.09691 7.67369 7.81383 8.00323 8.13296 8.42106 9.04959 9.61853 11.11723 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.030554 B = 0.002387 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.199799 B =11727.572326 C =12120.354809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.073 4.073 3 C -0.241 4.241 4 S 0.188 5.812 5 C -0.200 4.200 6 C -0.040 4.040 7 C 0.230 3.770 8 N -0.379 5.379 9 O 0.075 5.925 10 C 0.204 3.796 11 C -0.031 4.031 12 C -0.116 4.116 13 C -0.108 4.108 14 C 0.020 3.980 15 C -0.522 4.522 16 H 0.055 0.945 17 C 0.056 3.944 18 N -0.896 5.896 19 Si 0.892 3.108 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.277 1.277 23 N -0.482 5.482 24 H 0.072 0.928 25 H 0.066 0.934 26 H 0.084 0.916 27 H 0.170 0.830 28 H 0.177 0.823 29 H 0.102 0.898 30 H 0.109 0.891 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.052 0.948 34 H 0.052 0.948 35 H 0.016 0.984 36 H 0.016 0.984 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.317 22.566 -13.037 26.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.085 4.085 3 C -0.376 4.376 4 S 0.455 5.545 5 C -0.340 4.340 6 C -0.056 4.056 7 C -0.042 4.042 8 N -0.088 5.088 9 O 0.017 5.983 10 C -0.016 4.016 11 C -0.070 4.070 12 C -0.154 4.154 13 C -0.146 4.146 14 C -0.017 4.017 15 C -0.560 4.560 16 H 0.073 0.927 17 C -0.145 4.145 18 N -0.535 5.535 19 Si 0.720 3.280 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.202 1.202 23 N -0.215 5.215 24 H 0.091 0.909 25 H 0.085 0.915 26 H 0.102 0.898 27 H 0.187 0.813 28 H 0.194 0.806 29 H 0.120 0.880 30 H 0.127 0.873 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.034 0.966 36 H 0.034 0.966 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.823 24.157 -12.852 27.375 hybrid contribution -1.087 -2.078 0.205 2.354 sum -0.263 22.079 -12.647 25.446 Atomic orbital electron populations 1.20659 0.88826 1.03494 1.02983 1.18882 0.97906 0.90594 1.01095 1.25401 0.96293 1.02458 1.13442 1.83106 1.05679 0.96548 1.69151 1.25174 0.99521 1.02692 1.06593 1.16256 0.91857 0.87859 1.09587 1.23342 0.85920 0.93721 1.01224 1.74910 1.18636 0.93371 1.21907 1.85289 1.34184 1.13169 1.65660 1.29076 0.79253 0.99699 0.93621 1.20563 1.05161 0.79509 1.01784 1.21743 1.02744 0.99015 0.91938 1.21633 1.00522 0.90821 1.01616 1.19096 0.97274 0.95635 0.89700 1.21222 1.49338 0.93217 0.92237 0.92677 1.25035 0.95421 0.98349 0.95704 1.69956 1.50420 1.35865 0.97281 0.86661 0.78778 0.85643 0.76929 1.20239 1.21327 1.20230 1.72018 1.30808 0.97400 1.21268 0.90901 0.91461 0.89766 0.81268 0.80591 0.87951 0.87251 0.91497 0.91607 0.92876 0.92917 0.96592 0.96565 0.92943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.99 9.55 36.00 0.34 -0.65 16 2 C -0.07 -0.79 5.85 -105.89 -0.62 -1.41 16 3 C -0.24 -2.05 10.98 28.96 0.32 -1.74 16 4 S 0.19 1.51 23.09 -107.50 -2.48 -0.98 16 5 C -0.20 -2.17 10.67 29.39 0.31 -1.86 16 6 C -0.04 -0.51 5.80 -106.62 -0.62 -1.13 16 7 C 0.23 3.38 7.80 -156.06 -1.22 2.17 16 8 N -0.38 -5.57 9.50 31.00 0.29 -5.28 16 9 O 0.08 1.07 11.29 18.02 0.20 1.27 16 10 C 0.20 2.81 7.75 -12.98 -0.10 2.71 16 11 C -0.03 -0.38 5.84 -27.88 -0.16 -0.54 16 12 C -0.12 -1.79 5.20 -26.73 -0.14 -1.93 16 13 C -0.11 -2.04 5.15 -26.73 -0.14 -2.18 16 14 C 0.02 0.50 4.97 -27.88 -0.14 0.36 16 15 C -0.52 -14.56 9.11 -34.44 -0.31 -14.88 16 16 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 17 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 18 N -0.90 -26.95 13.29 55.43 0.74 -26.21 16 19 Si 0.89 21.51 29.54 -169.99 -5.02 16.48 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 N -0.48 -7.25 11.48 -9.85 -0.11 -7.36 16 24 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 25 H 0.07 0.51 8.13 -51.93 -0.42 0.09 16 26 H 0.08 0.96 5.89 -51.93 -0.31 0.65 16 27 H 0.17 1.00 8.06 -52.49 -0.42 0.57 16 28 H 0.18 1.83 8.06 -52.49 -0.42 1.41 16 29 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.11 1.20 8.14 -51.92 -0.42 0.78 16 31 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.02 0.43 8.14 -51.92 -0.42 0.01 16 37 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 333.10 15.07 5.02 5.02 Total: -1.00 -31.62 333.10 -8.85 -40.47 By element: Atomic # 1 Polarization: 1.06 SS G_CDS: -4.92 Total: -3.86 kcal Atomic # 6 Polarization: -16.99 SS G_CDS: -2.57 Total: -19.56 kcal Atomic # 7 Polarization: -39.77 SS G_CDS: 0.92 Total: -38.85 kcal Atomic # 8 Polarization: 1.07 SS G_CDS: 0.20 Total: 1.27 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: 1.51 SS G_CDS: -2.48 Total: -0.98 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.62 -8.85 -40.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589149356.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.280 kcal (2) G-P(sol) polarization free energy of solvation -31.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds