Wall clock time and date at job start Tue Mar 31 2020 06:34:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.37820 * 122.63412 * 2 1 4 4 C 1.33722 * 115.06901 * 179.97438 * 3 2 1 5 5 S 1.75867 * 109.74531 * 359.75739 * 4 3 2 6 6 C 1.34861 * 122.63953 * 179.97438 * 2 1 3 7 7 C 1.47730 * 125.26874 * 359.97438 * 6 2 1 8 8 N 1.31037 * 126.45407 * 0.04593 * 7 6 2 9 9 O 1.21287 * 110.04198 * 179.97438 * 8 7 6 10 10 C 1.33673 * 110.08708 * 359.97438 * 9 8 7 11 11 C 1.50698 * 126.40673 * 179.97438 * 10 9 8 12 12 C 1.53000 * 109.47412 * 270.00337 * 11 10 9 13 13 C 1.53001 * 109.47262 * 179.97438 * 12 11 10 14 14 C 1.53006 * 109.46805 * 180.02562 * 13 12 11 15 15 C 1.50701 * 109.46579 * 180.02562 * 14 13 12 16 16 H 1.07999 * 120.00111 * 0.02562 * 15 14 13 17 17 C 1.37877 * 119.99703 * 179.97438 * 15 14 13 18 18 N 1.31512 * 120.00075 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 119.99937 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47060 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47162 * 120.00125 * 19 17 15 22 22 H 1.48498 * 109.46685 * 239.99816 * 19 17 15 23 23 N 1.30933 * 107.19577 * 0.02562 * 10 9 8 24 24 H 1.08997 * 109.46640 * 270.01876 * 1 2 3 25 25 H 1.08996 * 109.47268 * 30.01588 * 1 2 3 26 26 H 1.09000 * 109.47082 * 150.02257 * 1 2 3 27 27 H 1.07992 * 122.46879 * 359.96267 * 3 2 1 28 28 H 1.07998 * 125.12714 * 180.02562 * 4 3 2 29 29 H 1.09005 * 109.47122 * 30.00310 * 11 10 9 30 30 H 1.08998 * 109.47928 * 150.00236 * 11 10 9 31 31 H 1.08996 * 109.47365 * 299.99659 * 12 11 10 32 32 H 1.09003 * 109.47325 * 59.99707 * 12 11 10 33 33 H 1.09000 * 109.47136 * 299.99573 * 13 12 11 34 34 H 1.08999 * 109.46911 * 60.00333 * 13 12 11 35 35 H 1.09000 * 109.46817 * 299.99636 * 14 13 12 36 36 H 1.08999 * 109.47221 * 60.00391 * 14 13 12 37 37 H 0.97004 * 120.00151 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2503 1.1606 0.0000 4 6 3.5759 0.9846 0.0005 5 16 3.9469 -0.7345 0.0081 6 6 2.2344 -1.1356 0.0005 7 6 1.6788 -2.5045 0.0017 8 7 0.4094 -2.8295 0.0015 9 8 0.2894 -4.0364 0.0022 10 6 1.4932 -4.6175 0.0022 11 6 1.7714 -6.0986 0.0035 12 6 1.8661 -6.5986 1.4464 13 6 2.1480 -8.1024 1.4476 14 6 2.2420 -8.6024 2.8906 15 6 2.5202 -10.0835 2.8917 16 1 2.6204 -10.6149 1.9569 17 6 2.6479 -10.7600 4.0864 18 7 2.5274 -10.1127 5.2248 19 14 2.9935 -12.5958 4.0879 20 1 3.0843 -13.0835 2.6882 21 1 4.2767 -12.8574 4.7880 22 1 1.8936 -13.3059 4.7887 23 7 2.3855 -3.6594 0.0021 24 1 -0.3632 0.0003 1.0277 25 1 -0.3633 0.8898 -0.5141 26 1 -0.3633 -0.8902 -0.5135 27 1 1.7957 2.1402 -0.0006 28 1 4.3082 1.7784 0.0010 29 1 0.9636 -6.6205 -0.5096 30 1 2.7130 -6.2920 -0.5105 31 1 2.6739 -6.0768 1.9595 32 1 0.9245 -6.4053 1.9604 33 1 1.3399 -8.6240 0.9347 34 1 3.0894 -8.2960 0.9335 35 1 3.0498 -8.0809 3.4039 36 1 1.3003 -8.4089 3.4043 37 1 2.6168 -10.5886 6.0652 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589372970.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:20 Heat of formation + Delta-G solvation = 75.222104 kcal Electronic energy + Delta-G solvation = -19516.005592 eV Core-core repulsion = 16387.605372 eV Total energy + Delta-G solvation = -3128.400220 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -45.55352 -38.73802 -36.25153 -35.47248 -33.47652 -32.20883 -30.88675 -29.32131 -28.43725 -25.79343 -24.35181 -23.34904 -22.73879 -21.60722 -20.19385 -18.70009 -18.22955 -18.08010 -16.77381 -16.22437 -15.73700 -15.15825 -14.71794 -14.38358 -14.37373 -13.98212 -13.37579 -13.04995 -12.94302 -12.54701 -12.51643 -12.39669 -12.10221 -11.85624 -11.77947 -11.69700 -11.21368 -11.06021 -10.93505 -10.67532 -10.60433 -10.56318 -10.26797 -9.72329 -9.33685 -9.05418 -8.81930 -8.63602 -8.35287 -5.99958 -4.02484 0.21834 1.17260 1.20535 1.65442 2.02001 2.65095 2.77458 3.31196 3.34822 3.38803 3.42567 4.00043 4.45902 4.57003 4.75080 5.01383 5.03480 5.15787 5.20248 5.21873 5.36086 5.39496 5.43464 5.63332 5.69731 5.74122 5.80585 5.97262 6.05188 6.08864 6.18844 6.33604 6.66799 6.81943 7.09406 7.67700 7.81170 8.00131 8.06133 8.41970 9.05202 9.61833 11.11420 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.030699 B = 0.002461 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.866843 B =11373.983165 C =11744.694071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.060 4.060 3 C -0.137 4.137 4 C -0.209 4.209 5 S 0.185 5.815 6 C -0.137 4.137 7 C 0.239 3.761 8 N -0.373 5.373 9 O 0.078 5.922 10 C 0.208 3.792 11 C -0.032 4.032 12 C -0.116 4.116 13 C -0.108 4.108 14 C 0.019 3.981 15 C -0.520 4.520 16 H 0.056 0.944 17 C 0.055 3.945 18 N -0.896 5.896 19 Si 0.891 3.109 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 N -0.482 5.482 24 H 0.074 0.926 25 H 0.069 0.931 26 H 0.082 0.918 27 H 0.146 0.854 28 H 0.171 0.829 29 H 0.103 0.897 30 H 0.110 0.890 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.053 0.947 34 H 0.052 0.948 35 H 0.016 0.984 36 H 0.016 0.984 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.195 22.316 -13.053 25.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.077 4.077 3 C -0.168 4.168 4 C -0.347 4.347 5 S 0.451 5.549 6 C -0.256 4.256 7 C -0.031 4.031 8 N -0.082 5.082 9 O 0.019 5.981 10 C -0.012 4.012 11 C -0.071 4.071 12 C -0.155 4.155 13 C -0.146 4.146 14 C -0.018 4.018 15 C -0.558 4.558 16 H 0.074 0.926 17 C -0.146 4.146 18 N -0.535 5.535 19 Si 0.719 3.281 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.210 1.210 23 N -0.216 5.216 24 H 0.093 0.907 25 H 0.088 0.912 26 H 0.101 0.899 27 H 0.164 0.836 28 H 0.189 0.811 29 H 0.121 0.879 30 H 0.128 0.872 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.034 0.966 36 H 0.034 0.966 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.035 22.165 -12.866 25.629 hybrid contribution -1.030 -0.243 0.217 1.080 sum -1.065 21.923 -12.649 25.332 Atomic orbital electron populations 1.20711 0.89022 1.03540 1.02990 1.19132 0.98010 0.90713 0.99853 1.19896 0.92766 0.99115 1.04989 1.26014 1.00019 1.00121 1.08510 1.84518 1.01805 0.98322 1.70271 1.21141 0.97669 0.90449 1.16301 1.22648 0.85859 0.92920 1.01701 1.74998 1.18823 0.92691 1.21730 1.85289 1.33616 1.13583 1.65647 1.29066 0.79081 0.99754 0.93299 1.20591 1.04935 0.79674 1.01870 1.21749 1.02736 0.99110 0.91871 1.21633 1.00438 0.90877 1.01631 1.19110 0.97272 0.95710 0.89692 1.21296 1.48404 0.93859 0.92285 0.92568 1.25039 0.95479 0.98328 0.95716 1.69977 1.50441 1.35832 0.97255 0.86549 0.77856 0.85604 0.78069 1.19718 1.21039 1.21040 1.72103 1.30937 0.97020 1.21501 0.90697 0.91237 0.89949 0.83615 0.81129 0.87857 0.87150 0.91451 0.91588 0.92864 0.92889 0.96568 0.96550 0.93061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.01 9.59 36.01 0.35 -0.66 16 2 C -0.06 -0.66 5.83 -105.97 -0.62 -1.28 16 3 C -0.14 -1.17 9.96 -41.32 -0.41 -1.58 16 4 C -0.21 -1.68 11.23 29.15 0.33 -1.36 16 5 S 0.18 1.97 23.32 -107.50 -2.51 -0.54 16 6 C -0.14 -1.77 6.44 -36.90 -0.24 -2.00 16 7 C 0.24 3.55 7.91 -156.04 -1.23 2.31 16 8 N -0.37 -5.47 9.68 30.98 0.30 -5.17 16 9 O 0.08 1.09 11.29 18.03 0.20 1.30 16 10 C 0.21 2.86 7.74 -12.98 -0.10 2.76 16 11 C -0.03 -0.38 5.84 -27.88 -0.16 -0.54 16 12 C -0.12 -1.79 5.20 -26.73 -0.14 -1.93 16 13 C -0.11 -2.03 5.15 -26.73 -0.14 -2.17 16 14 C 0.02 0.48 4.97 -27.88 -0.14 0.34 16 15 C -0.52 -14.50 9.11 -34.44 -0.31 -14.81 16 16 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 17 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 18 N -0.90 -26.92 13.29 55.43 0.74 -26.18 16 19 Si 0.89 21.50 29.54 -169.99 -5.02 16.47 16 20 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 23 N -0.48 -7.36 11.58 -9.89 -0.11 -7.47 16 24 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.07 0.51 8.13 -51.93 -0.42 0.09 16 26 H 0.08 0.93 5.97 -51.93 -0.31 0.62 16 27 H 0.15 0.87 8.06 -52.49 -0.42 0.44 16 28 H 0.17 0.86 8.06 -52.49 -0.42 0.43 16 29 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.11 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 333.99 15.07 5.03 5.03 Total: -1.00 -31.84 333.99 -9.21 -41.05 By element: Atomic # 1 Polarization: -0.13 SS G_CDS: -4.92 Total: -5.05 kcal Atomic # 6 Polarization: -16.52 SS G_CDS: -2.92 Total: -19.43 kcal Atomic # 7 Polarization: -39.75 SS G_CDS: 0.92 Total: -38.83 kcal Atomic # 8 Polarization: 1.09 SS G_CDS: 0.20 Total: 1.30 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: 1.97 SS G_CDS: -2.51 Total: -0.54 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.84 -9.21 -41.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589372970.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.272 kcal (2) G-P(sol) polarization free energy of solvation -31.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.050 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds