Wall clock time and date at job start Tue Mar 31 2020 06:34:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.37820 * 122.63412 * 2 1 4 4 C 1.33722 * 115.06901 * 179.97438 * 3 2 1 5 5 S 1.75867 * 109.74531 * 359.75739 * 4 3 2 6 6 C 1.34861 * 122.63953 * 179.97438 * 2 1 3 7 7 C 1.47730 * 125.26874 * 359.97438 * 6 2 1 8 8 N 1.31037 * 126.45407 * 0.04593 * 7 6 2 9 9 O 1.21287 * 110.04198 * 179.97438 * 8 7 6 10 10 C 1.33673 * 110.08708 * 359.97438 * 9 8 7 11 11 C 1.50698 * 126.40673 * 179.97438 * 10 9 8 12 12 C 1.53000 * 109.47412 * 270.00337 * 11 10 9 13 13 C 1.53001 * 109.47262 * 179.97438 * 12 11 10 14 14 C 1.53006 * 109.46805 * 180.02562 * 13 12 11 15 15 C 1.50701 * 109.46579 * 180.02562 * 14 13 12 16 16 H 1.07999 * 120.00111 * 0.02562 * 15 14 13 17 17 C 1.37877 * 119.99703 * 179.97438 * 15 14 13 18 18 N 1.31512 * 120.00075 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 119.99937 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47060 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47162 * 120.00125 * 19 17 15 22 22 H 1.48498 * 109.46685 * 239.99816 * 19 17 15 23 23 N 1.30933 * 107.19577 * 0.02562 * 10 9 8 24 24 H 1.08997 * 109.46640 * 270.01876 * 1 2 3 25 25 H 1.08996 * 109.47268 * 30.01588 * 1 2 3 26 26 H 1.09000 * 109.47082 * 150.02257 * 1 2 3 27 27 H 1.07992 * 122.46879 * 359.96267 * 3 2 1 28 28 H 1.07998 * 125.12714 * 180.02562 * 4 3 2 29 29 H 1.09005 * 109.47122 * 30.00310 * 11 10 9 30 30 H 1.08998 * 109.47928 * 150.00236 * 11 10 9 31 31 H 1.08996 * 109.47365 * 299.99659 * 12 11 10 32 32 H 1.09003 * 109.47325 * 59.99707 * 12 11 10 33 33 H 1.09000 * 109.47136 * 299.99573 * 13 12 11 34 34 H 1.08999 * 109.46911 * 60.00333 * 13 12 11 35 35 H 1.09000 * 109.46817 * 299.99636 * 14 13 12 36 36 H 1.08999 * 109.47221 * 60.00391 * 14 13 12 37 37 H 0.97004 * 120.00151 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2503 1.1606 0.0000 4 6 3.5759 0.9846 0.0005 5 16 3.9469 -0.7345 0.0081 6 6 2.2344 -1.1356 0.0005 7 6 1.6788 -2.5045 0.0017 8 7 0.4094 -2.8295 0.0015 9 8 0.2894 -4.0364 0.0022 10 6 1.4932 -4.6175 0.0022 11 6 1.7714 -6.0986 0.0035 12 6 1.8661 -6.5986 1.4464 13 6 2.1480 -8.1024 1.4476 14 6 2.2420 -8.6024 2.8906 15 6 2.5202 -10.0835 2.8917 16 1 2.6204 -10.6149 1.9569 17 6 2.6479 -10.7600 4.0864 18 7 2.5274 -10.1127 5.2248 19 14 2.9935 -12.5958 4.0879 20 1 3.0843 -13.0835 2.6882 21 1 4.2767 -12.8574 4.7880 22 1 1.8936 -13.3059 4.7887 23 7 2.3855 -3.6594 0.0021 24 1 -0.3632 0.0003 1.0277 25 1 -0.3633 0.8898 -0.5141 26 1 -0.3633 -0.8902 -0.5135 27 1 1.7957 2.1402 -0.0006 28 1 4.3082 1.7784 0.0010 29 1 0.9636 -6.6205 -0.5096 30 1 2.7130 -6.2920 -0.5105 31 1 2.6739 -6.0768 1.9595 32 1 0.9245 -6.4053 1.9604 33 1 1.3399 -8.6240 0.9347 34 1 3.0894 -8.2960 0.9335 35 1 3.0498 -8.0809 3.4039 36 1 1.3003 -8.4089 3.4043 37 1 2.6168 -10.5886 6.0652 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589372970.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:20 Heat of formation + Delta-G solvation = 56.717809 kcal Electronic energy + Delta-G solvation = -19516.807998 eV Core-core repulsion = 16387.605372 eV Total energy + Delta-G solvation = -3129.202626 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -46.62708 -39.50068 -37.48327 -36.70522 -35.15882 -33.70932 -31.84711 -30.78397 -29.28553 -27.48948 -25.34142 -24.65945 -23.80921 -22.76661 -21.80103 -19.61567 -19.19165 -19.04129 -18.38170 -17.74337 -16.61478 -16.47832 -16.36965 -15.67550 -15.16812 -14.89540 -14.64972 -14.23815 -14.06547 -13.74417 -13.73856 -13.48960 -13.36538 -13.21657 -12.87141 -12.74593 -12.71793 -12.36762 -12.28338 -12.17652 -12.08196 -11.75248 -11.53611 -11.36448 -11.23848 -10.94472 -10.53304 -9.64295 -9.43422 -8.17576 -6.28323 -0.62824 0.17290 0.38570 0.92939 1.14299 1.42267 1.42497 1.55819 1.71944 1.78330 2.38757 2.43586 2.98565 3.16183 3.77427 3.91579 4.02395 4.07057 4.21467 4.27912 4.38910 4.58287 4.62932 4.65722 4.68580 4.78601 4.84250 4.89794 4.95962 5.03267 5.16095 5.31606 5.33265 5.34299 5.43576 5.58811 5.81425 5.91229 6.28102 6.90848 6.99808 7.41347 8.94644 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.030699 B = 0.002461 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.866843 B =11373.983165 C =11744.694071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.054 4.054 3 C -0.145 4.145 4 C -0.181 4.181 5 S 0.155 5.845 6 C -0.183 4.183 7 C 0.233 3.767 8 N -0.385 5.385 9 O 0.073 5.927 10 C 0.210 3.790 11 C -0.020 4.020 12 C -0.106 4.106 13 C -0.095 4.095 14 C 0.018 3.982 15 C -0.538 4.538 16 H 0.066 0.934 17 C -0.006 4.006 18 N -0.938 5.938 19 Si 0.965 3.035 20 H -0.258 1.258 21 H -0.281 1.281 22 H -0.280 1.280 23 N -0.505 5.505 24 H 0.075 0.925 25 H 0.096 0.904 26 H 0.063 0.937 27 H 0.179 0.821 28 H 0.207 0.793 29 H 0.134 0.866 30 H 0.126 0.874 31 H 0.050 0.950 32 H 0.060 0.940 33 H 0.068 0.932 34 H 0.062 0.938 35 H -0.014 1.014 36 H -0.010 1.010 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.026 23.132 -14.595 27.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.072 4.072 3 C -0.175 4.175 4 C -0.318 4.318 5 S 0.420 5.580 6 C -0.301 4.301 7 C -0.037 4.037 8 N -0.096 5.096 9 O 0.016 5.984 10 C -0.010 4.010 11 C -0.059 4.059 12 C -0.145 4.145 13 C -0.132 4.132 14 C -0.019 4.019 15 C -0.576 4.576 16 H 0.084 0.916 17 C -0.203 4.203 18 N -0.578 5.578 19 Si 0.790 3.210 20 H -0.182 1.182 21 H -0.207 1.207 22 H -0.206 1.206 23 N -0.238 5.238 24 H 0.093 0.907 25 H 0.115 0.885 26 H 0.082 0.918 27 H 0.196 0.804 28 H 0.224 0.776 29 H 0.152 0.848 30 H 0.144 0.856 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.004 0.996 36 H 0.008 0.992 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.125 22.973 -14.428 27.128 hybrid contribution -1.076 -0.366 0.725 1.348 sum -0.951 22.608 -13.703 26.453 Atomic orbital electron populations 1.20744 0.88503 1.03949 1.03067 1.19529 0.98670 0.91048 0.97915 1.20208 0.92804 0.99587 1.04858 1.26451 1.00654 0.98936 1.05793 1.84552 1.01277 1.01094 1.71029 1.21368 0.98853 0.90215 1.19669 1.23065 0.85860 0.93770 1.01020 1.74990 1.18996 0.92843 1.22757 1.85260 1.33733 1.13586 1.65840 1.29315 0.78866 1.00146 0.92666 1.20560 1.07072 0.78698 0.99532 1.21516 1.01829 0.96819 0.94318 1.21416 1.01612 0.92921 0.97286 1.19067 0.94628 0.94843 0.93388 1.21799 1.47832 0.95257 0.92740 0.91590 1.26029 0.95276 1.03630 0.95356 1.70119 1.51691 1.38008 0.98016 0.85399 0.77632 0.79273 0.78746 1.18155 1.20686 1.20585 1.72100 1.31712 0.97659 1.22359 0.90678 0.88511 0.91805 0.80359 0.77574 0.84786 0.85580 0.93075 0.92081 0.91296 0.91930 0.99574 0.99174 0.92935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.91 9.59 71.24 0.68 -1.22 16 2 C -0.05 -1.12 5.83 -20.74 -0.12 -1.24 16 3 C -0.15 -2.07 9.96 21.14 0.21 -1.86 16 4 C -0.18 -2.42 11.23 66.79 0.75 -1.67 16 5 S 0.15 3.22 23.32 -56.49 -1.32 1.91 16 6 C -0.18 -4.72 6.44 24.00 0.15 -4.56 16 7 C 0.23 7.05 7.91 136.95 1.08 8.14 16 8 N -0.39 -11.51 9.68 -58.81 -0.57 -12.08 16 9 O 0.07 2.07 11.29 74.58 0.84 2.91 16 10 C 0.21 5.73 7.74 88.35 0.68 6.42 16 11 C -0.02 -0.45 5.84 29.85 0.17 -0.28 16 12 C -0.11 -3.25 5.20 30.59 0.16 -3.09 16 13 C -0.09 -3.50 5.15 30.60 0.16 -3.35 16 14 C 0.02 0.92 4.97 29.85 0.15 1.07 16 15 C -0.54 -30.15 9.11 25.60 0.23 -29.92 16 16 H 0.07 3.48 7.74 -2.91 -0.02 3.46 16 17 C -0.01 -0.33 5.46 84.65 0.46 0.13 16 18 N -0.94 -57.65 13.29 21.45 0.28 -57.37 16 19 Si 0.96 44.07 29.54 68.60 2.03 46.10 16 20 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 21 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 22 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 23 N -0.50 -15.62 11.58 -302.31 -3.50 -19.12 16 24 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.10 1.19 8.13 -2.39 -0.02 1.18 16 26 H 0.06 1.43 5.97 -2.39 -0.01 1.42 16 27 H 0.18 1.36 8.06 -2.91 -0.02 1.34 16 28 H 0.21 1.20 8.06 -2.91 -0.02 1.17 16 29 H 0.13 2.24 8.14 -2.38 -0.02 2.22 16 30 H 0.13 2.50 8.14 -2.39 -0.02 2.48 16 31 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 34 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 35 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 36 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 37 H 0.26 15.11 8.31 -92.70 -0.77 14.34 16 Total: -1.00 -71.13 333.99 3.62 -67.52 By element: Atomic # 1 Polarization: 0.50 SS G_CDS: 1.07 Total: 1.58 kcal Atomic # 6 Polarization: -36.22 SS G_CDS: 4.78 Total: -31.44 kcal Atomic # 7 Polarization: -84.78 SS G_CDS: -3.79 Total: -88.57 kcal Atomic # 8 Polarization: 2.07 SS G_CDS: 0.84 Total: 2.91 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Atomic # 16 Polarization: 3.22 SS G_CDS: -1.32 Total: 1.91 kcal Total: -71.13 3.62 -67.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589372970.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.233 kcal (2) G-P(sol) polarization free energy of solvation -71.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds