Wall clock time and date at job start Tue Mar 31 2020 06:42:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46632 * 2 1 4 4 C 1.50696 * 109.47264 * 239.99931 * 2 1 3 5 5 H 1.07999 * 119.99822 * 239.99677 * 4 2 1 6 6 C 1.37876 * 120.00339 * 59.99823 * 4 2 1 7 7 N 1.31514 * 119.99769 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00300 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47057 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47025 * 120.00050 * 8 6 4 11 11 H 1.48500 * 109.46740 * 240.00408 * 8 6 4 12 12 C 1.53002 * 109.46911 * 119.99756 * 2 1 3 13 13 N 1.46506 * 109.47035 * 300.00027 * 12 2 1 14 14 C 1.34777 * 119.99873 * 179.97438 * 13 12 2 15 15 O 1.21727 * 119.99649 * 0.28335 * 14 13 12 16 16 C 1.46496 * 119.99867 * 179.97438 * 14 13 12 17 17 C 1.36112 * 125.70738 * 180.02562 * 16 14 13 18 18 C 1.42232 * 107.62382 * 180.02562 * 17 16 14 19 19 C 1.45595 * 140.77929 * 180.02562 * 18 17 16 20 20 C 1.31812 * 114.62949 * 179.97438 * 19 18 17 21 21 S 1.75355 * 111.24773 * 0.02562 * 20 19 18 22 22 C 1.38180 * 106.99446 * 0.02562 * 18 17 16 23 23 N 1.37462 * 108.16590 * 359.73630 * 22 18 17 24 24 H 0.96998 * 125.68322 * 180.26746 * 23 22 18 25 25 H 1.09002 * 109.47398 * 300.00272 * 1 2 3 26 26 H 1.09001 * 109.47194 * 60.00452 * 1 2 3 27 27 H 1.09000 * 109.46968 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.46524 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.46962 * 299.99689 * 3 2 1 30 30 H 1.08992 * 109.47199 * 60.00241 * 3 2 1 31 31 H 0.97000 * 120.00540 * 179.97438 * 7 6 4 32 32 H 1.09000 * 109.46497 * 180.02562 * 12 2 1 33 33 H 1.08996 * 109.46876 * 60.00032 * 12 2 1 34 34 H 0.96999 * 120.00080 * 0.02562 * 13 12 2 35 35 H 1.07993 * 126.19131 * 0.02562 * 17 16 14 36 36 H 1.07995 * 122.68516 * 359.95233 * 19 18 17 37 37 H 1.07998 * 124.37534 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5884 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3214 -1.1205 -4.0079 9 1 3.1466 -2.2871 -3.6037 10 1 1.1662 -1.5868 -4.8160 11 1 3.1467 -0.1875 -4.8164 12 6 2.0400 -0.7212 1.2493 13 7 1.5516 -0.0305 2.4455 14 6 1.8767 -0.4912 3.6696 15 8 2.5804 -1.4782 3.7813 16 6 1.3888 0.1998 4.8657 17 6 1.6450 -0.1625 6.1524 18 6 0.9862 0.7693 7.0014 19 6 0.7813 1.0598 8.4133 20 6 0.0333 2.1182 8.6535 21 16 -0.5002 2.8709 7.1623 22 6 0.3432 1.6775 6.1823 23 7 0.5955 1.3304 4.8764 24 1 0.2691 1.7999 4.0929 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.1299 1.4426 0.0005 29 1 1.6765 1.9564 -0.8900 30 1 1.6766 1.9564 0.8899 31 1 0.7095 1.1617 -3.4844 32 1 3.1300 -0.7208 1.2495 33 1 1.6766 -1.7488 1.2493 34 1 0.9936 0.7579 2.3564 35 1 2.2407 -1.0050 6.4712 36 1 1.2078 0.4562 9.2008 37 1 -0.2185 2.4755 9.6410 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590915931.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:59 Heat of formation + Delta-G solvation = 8.814059 kcal Electronic energy + Delta-G solvation = -20481.707497 eV Core-core repulsion = 17350.427608 eV Total energy + Delta-G solvation = -3131.279889 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.37500 -40.40042 -38.17159 -36.30249 -35.09839 -32.83295 -31.54408 -29.73120 -27.62245 -27.51103 -26.82972 -24.25657 -23.46023 -21.26095 -20.81616 -20.54241 -20.08884 -18.13593 -17.63580 -16.81748 -16.62461 -16.54381 -15.92773 -15.53452 -15.46243 -15.17074 -14.83447 -14.50055 -14.47909 -14.09142 -13.70856 -13.26208 -13.15486 -12.79100 -12.75192 -12.60051 -12.59007 -12.30585 -12.16701 -11.73935 -11.54416 -11.47476 -11.15893 -10.74456 -10.57133 -10.43585 -10.12290 -9.27877 -8.63992 -8.05468 -6.21006 0.09264 0.20341 0.44481 1.09186 1.40326 1.44932 1.54002 1.83842 2.00740 2.16084 2.32701 2.45836 3.18790 3.63050 3.83097 4.02241 4.32544 4.45951 4.46642 4.64747 4.64993 4.78554 4.93047 4.97892 5.00735 5.13706 5.16346 5.20646 5.25973 5.44146 5.47431 5.61853 5.64985 5.66412 6.10089 6.11254 6.16076 6.39244 6.48103 6.82821 7.04933 7.47127 8.93834 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.035623 B = 0.003185 C = 0.002983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.829353 B = 8788.519278 C = 9383.289654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.052 3.948 3 C -0.122 4.122 4 C -0.528 4.528 5 H 0.046 0.954 6 C 0.029 3.971 7 N -0.899 5.899 8 Si 0.945 3.055 9 H -0.275 1.275 10 H -0.282 1.282 11 H -0.282 1.282 12 C 0.146 3.854 13 N -0.705 5.705 14 C 0.580 3.420 15 O -0.571 6.571 16 C -0.018 4.018 17 C -0.081 4.081 18 C -0.180 4.180 19 C -0.086 4.086 20 C -0.210 4.210 21 S 0.156 5.844 22 C -0.023 4.023 23 N -0.519 5.519 24 H 0.430 0.570 25 H 0.034 0.966 26 H 0.064 0.936 27 H 0.020 0.980 28 H 0.019 0.981 29 H 0.064 0.936 30 H 0.034 0.966 31 H 0.260 0.740 32 H 0.045 0.955 33 H 0.045 0.955 34 H 0.404 0.596 35 H 0.157 0.843 36 H 0.166 0.834 37 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.595 6.488 20.542 22.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.051 3.949 3 C -0.180 4.180 4 C -0.567 4.567 5 H 0.065 0.935 6 C -0.171 4.171 7 N -0.538 5.538 8 Si 0.772 3.228 9 H -0.199 1.199 10 H -0.208 1.208 11 H -0.208 1.208 12 C 0.023 3.977 13 N -0.356 5.356 14 C 0.368 3.632 15 O -0.451 6.451 16 C -0.131 4.131 17 C -0.109 4.109 18 C -0.193 4.193 19 C -0.116 4.116 20 C -0.344 4.344 21 S 0.409 5.591 22 C -0.252 4.252 23 N -0.123 5.123 24 H 0.270 0.730 25 H 0.053 0.947 26 H 0.083 0.917 27 H 0.039 0.961 28 H 0.039 0.961 29 H 0.083 0.917 30 H 0.053 0.947 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.240 0.760 35 H 0.175 0.825 36 H 0.183 0.817 37 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -5.064 7.160 19.958 21.800 hybrid contribution 0.903 -1.281 -1.464 2.145 sum -4.161 5.879 18.494 19.847 Atomic orbital electron populations 1.21689 0.97112 0.98827 1.00328 1.18366 0.93242 0.93031 0.90271 1.21688 0.98107 0.97830 1.00330 1.21291 1.31723 1.12229 0.91436 0.93522 1.25443 0.95099 0.95577 1.00984 1.69901 1.37021 1.23283 1.23605 0.85698 0.78122 0.78750 0.80193 1.19942 1.20753 1.20766 1.21401 0.97488 0.95304 0.83496 1.46008 1.52542 1.31699 1.05309 1.17291 0.80004 0.83458 0.82449 1.90816 1.39873 1.27612 1.86777 1.19826 1.05113 0.93333 0.94827 1.20904 1.00881 0.99940 0.89158 1.19735 1.06322 0.99275 0.93949 1.20546 0.99811 0.98312 0.92886 1.25326 1.05868 1.01036 1.02170 1.83921 1.53654 1.27064 0.94466 1.24056 1.08275 1.04858 0.88026 1.41367 1.41946 1.23274 1.05746 0.73013 0.94729 0.91711 0.96125 0.96130 0.91705 0.94727 0.93001 0.93619 0.93615 0.75974 0.82502 0.81669 0.77919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.28 8.08 71.98 0.58 -4.70 16 2 C 0.05 2.33 0.50 -52.93 -0.03 2.30 16 3 C -0.12 -5.28 8.08 71.98 0.58 -4.70 16 4 C -0.53 -27.52 8.01 25.60 0.21 -27.32 16 5 H 0.05 2.49 7.74 -2.91 -0.02 2.46 16 6 C 0.03 1.50 5.15 84.65 0.44 1.93 16 7 N -0.90 -47.22 9.35 21.45 0.20 -47.02 16 8 Si 0.95 42.18 29.54 68.60 2.03 44.21 16 9 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 10 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 11 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 12 C 0.15 6.12 4.50 86.38 0.39 6.51 16 13 N -0.71 -24.29 4.95 -467.23 -2.31 -26.61 16 14 C 0.58 20.55 7.78 86.39 0.67 21.22 16 15 O -0.57 -24.28 16.85 -4.43 -0.07 -24.36 16 16 C -0.02 -0.51 6.97 39.81 0.28 -0.24 16 17 C -0.08 -2.22 10.58 22.77 0.24 -1.98 16 18 C -0.18 -4.27 6.80 -20.40 -0.14 -4.40 16 19 C -0.09 -1.44 10.42 23.39 0.24 -1.19 16 20 C -0.21 -2.76 11.03 67.04 0.74 -2.02 16 21 S 0.16 2.46 23.24 -56.49 -1.31 1.15 16 22 C -0.02 -0.52 8.41 83.80 0.70 0.18 16 23 N -0.52 -12.28 6.08 -179.04 -1.09 -13.37 16 24 H 0.43 8.20 8.14 -92.71 -0.75 7.44 16 25 H 0.03 1.23 6.86 -2.39 -0.02 1.22 16 26 H 0.06 3.13 6.07 -2.39 -0.01 3.12 16 27 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.06 3.14 6.07 -2.39 -0.01 3.12 16 30 H 0.03 1.23 6.86 -2.39 -0.02 1.22 16 31 H 0.26 13.16 8.31 -92.71 -0.77 12.39 16 32 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.40 11.90 5.23 -92.71 -0.49 11.41 16 35 H 0.16 4.12 8.06 -2.91 -0.02 4.09 16 36 H 0.17 1.96 8.06 -2.91 -0.02 1.93 16 37 H 0.20 1.20 8.06 -2.91 -0.02 1.18 16 Total: -1.00 -62.19 319.69 2.22 -59.97 By element: Atomic # 1 Polarization: 20.54 SS G_CDS: -0.12 Total: 20.42 kcal Atomic # 6 Polarization: -19.30 SS G_CDS: 4.91 Total: -14.39 kcal Atomic # 7 Polarization: -83.79 SS G_CDS: -3.20 Total: -86.99 kcal Atomic # 8 Polarization: -24.28 SS G_CDS: -0.07 Total: -24.36 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.21 kcal Atomic # 16 Polarization: 2.46 SS G_CDS: -1.31 Total: 1.15 kcal Total: -62.19 2.22 -59.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590915931.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.785 kcal (2) G-P(sol) polarization free energy of solvation -62.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds