Wall clock time and date at job start Tue Mar 31 2020 06:23:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86804 * 119.99683 * 2 1 4 4 H 1.48494 * 109.47143 * 272.42743 * 3 2 1 5 5 H 1.48500 * 109.47185 * 32.42993 * 3 2 1 6 6 H 1.48498 * 109.46641 * 152.42752 * 3 2 1 7 7 C 1.37878 * 119.99962 * 180.02562 * 2 1 3 8 8 H 1.07988 * 120.00304 * 0.77063 * 7 2 1 9 9 C 1.50707 * 119.99642 * 180.77692 * 7 2 1 10 10 C 1.52998 * 115.55162 * 94.99931 * 9 7 2 11 11 S 1.81002 * 109.47075 * 320.42105 * 10 9 7 12 12 C 1.76202 * 99.99797 * 184.94652 * 11 10 9 13 13 N 1.31832 * 119.44009 * 354.60939 * 12 11 10 14 14 C 1.33982 * 120.67911 * 179.72747 * 13 12 11 15 15 O 1.22162 * 120.21971 * 180.25686 * 14 13 12 16 16 C 1.41862 * 119.56451 * 0.56486 * 14 13 12 17 17 C 1.35015 * 118.94068 * 359.71106 * 16 14 13 18 18 N 1.36046 * 119.43843 * 174.88211 * 12 11 10 19 19 C 1.46508 * 119.80068 * 359.97438 * 18 12 11 20 20 C 1.53001 * 117.49637 * 194.24865 * 19 18 12 21 21 C 1.52999 * 117.49855 * 125.59063 * 19 18 12 22 22 C 1.53000 * 117.49350 * 240.66844 * 9 7 2 23 23 C 1.53006 * 60.03252 * 107.50004 * 22 9 7 24 24 H 0.96992 * 119.99783 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.46990 * 80.41510 * 10 9 7 26 26 H 1.08996 * 109.46956 * 200.41738 * 10 9 7 27 27 H 1.07996 * 120.52959 * 179.73869 * 16 14 13 28 28 H 1.07998 * 120.35179 * 179.97438 * 17 16 14 29 29 H 1.08998 * 115.54708 * 339.91765 * 19 18 12 30 30 H 1.09004 * 117.49638 * 0.02562 * 20 19 18 31 31 H 1.08998 * 117.49506 * 145.02027 * 20 19 18 32 32 H 1.09002 * 117.49751 * 214.97972 * 21 19 18 33 33 H 1.09003 * 117.49694 * 359.97438 * 21 19 18 34 34 H 1.09001 * 117.49761 * 214.99952 * 22 9 7 35 35 H 1.08994 * 117.50269 * 0.02562 * 22 9 7 36 36 H 1.08997 * 117.49685 * 107.49542 * 23 22 9 37 37 H 1.08996 * 117.49739 * 252.52140 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4452 2.0762 -1.3988 5 1 1.4732 2.6373 0.7508 6 1 3.5714 1.4259 0.6481 7 6 2.0046 -1.1941 -0.0005 8 1 1.4648 -2.1292 -0.0135 9 6 3.5115 -1.1940 0.0172 10 6 4.1553 -1.3243 1.3990 11 16 3.2147 -0.3467 2.5973 12 6 4.2312 -0.5490 4.0223 13 7 5.2682 -1.3612 3.9685 14 6 6.0609 -1.5294 5.0355 15 8 7.0224 -2.2806 4.9748 16 6 5.7725 -0.8345 6.2382 17 6 4.7032 -0.0111 6.2767 18 7 3.9293 0.1314 5.1610 19 6 2.7666 1.0224 5.1903 20 6 2.6596 2.0059 6.3574 21 6 1.7283 0.7929 6.2904 22 6 4.2318 -1.8503 -1.1624 23 6 4.2308 -0.3270 -1.0192 24 1 -0.4849 0.8400 0.0004 25 1 4.1540 -2.3709 1.7032 26 1 5.1814 -0.9591 1.3576 27 1 6.3986 -0.9618 7.1089 28 1 4.4624 0.5288 7.1805 29 1 2.4042 1.3544 4.2174 30 1 3.4545 1.9904 7.1032 31 1 2.2264 2.9849 6.1524 32 1 0.6828 0.9744 6.0413 33 1 1.9101 -0.0212 6.9921 34 1 5.1643 -2.3748 -0.9540 35 1 3.6158 -2.2816 -1.9514 36 1 5.1627 0.1506 -0.7165 37 1 3.6138 0.2434 -1.7135 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594888037.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:09 Heat of formation + Delta-G solvation = 51.250946 kcal Electronic energy + Delta-G solvation = -21081.548803 eV Core-core repulsion = 17952.109116 eV Total energy + Delta-G solvation = -3129.439687 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.44484 -39.55919 -38.83080 -37.31865 -34.32380 -34.16480 -32.73915 -29.82135 -27.62712 -26.02781 -25.47463 -23.47836 -23.43925 -22.97284 -21.04471 -19.57280 -19.41942 -18.41687 -18.05960 -17.05956 -17.00189 -16.51353 -15.96601 -15.75043 -15.64570 -15.16792 -14.95362 -14.73449 -14.53342 -14.30953 -13.90554 -13.71350 -13.05495 -12.80173 -12.50034 -12.44000 -12.23727 -12.17915 -12.01545 -11.95703 -11.65452 -11.49468 -11.37260 -10.92404 -10.69630 -10.30552 -10.19043 -9.57059 -8.91421 -8.30144 -6.39462 -0.20334 -0.06302 0.14503 1.07504 1.31421 1.40297 1.45070 1.55352 2.35796 2.54628 2.81462 3.02181 3.11867 3.25594 3.42563 3.48258 3.74094 3.83855 3.93200 4.01827 4.18001 4.36367 4.46669 4.49032 4.50607 4.63432 4.71148 4.75093 4.80840 4.96435 4.97998 5.11390 5.15785 5.30499 5.42392 5.46391 5.64718 6.28282 6.56679 6.67365 7.08435 7.28036 8.84250 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.015857 B = 0.006836 C = 0.005216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.330619 B = 4094.720947 C = 5367.118559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.048 3.952 3 Si 0.895 3.105 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.209 1.209 7 C -0.489 4.489 8 H 0.040 0.960 9 C -0.023 4.023 10 C -0.051 4.051 11 S 0.051 5.949 12 C 0.368 3.632 13 N -0.629 5.629 14 C 0.488 3.512 15 O -0.595 6.595 16 C -0.309 4.309 17 C 0.164 3.836 18 N -0.453 5.453 19 C -0.011 4.011 20 C -0.138 4.138 21 C -0.164 4.164 22 C -0.154 4.154 23 C -0.193 4.193 24 H 0.269 0.731 25 H 0.081 0.919 26 H 0.086 0.914 27 H 0.175 0.825 28 H 0.231 0.769 29 H 0.138 0.862 30 H 0.132 0.868 31 H 0.134 0.866 32 H 0.122 0.878 33 H 0.114 0.886 34 H 0.102 0.898 35 H 0.088 0.912 36 H 0.102 0.898 37 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.160 9.596 14.638 17.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.152 4.152 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.211 1.211 6 H -0.132 1.132 7 C -0.528 4.528 8 H 0.058 0.942 9 C -0.025 4.025 10 C -0.200 4.200 11 S 0.288 5.712 12 C -0.003 4.003 13 N -0.378 5.378 14 C 0.281 3.719 15 O -0.481 6.481 16 C -0.339 4.339 17 C 0.037 3.963 18 N -0.148 5.148 19 C -0.114 4.114 20 C -0.176 4.176 21 C -0.201 4.201 22 C -0.193 4.193 23 C -0.229 4.229 24 H 0.079 0.921 25 H 0.100 0.900 26 H 0.105 0.895 27 H 0.192 0.808 28 H 0.247 0.753 29 H 0.155 0.845 30 H 0.150 0.850 31 H 0.152 0.848 32 H 0.140 0.860 33 H 0.132 0.868 34 H 0.120 0.880 35 H 0.106 0.894 36 H 0.120 0.880 37 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.732 9.499 13.925 17.076 hybrid contribution 1.031 -0.163 0.216 1.066 sum 3.764 9.336 14.140 17.357 Atomic orbital electron populations 1.69991 1.07975 1.28245 1.50769 1.25555 0.94989 1.01674 0.93015 0.86475 0.82117 0.80051 0.79367 1.20237 1.21129 1.13171 1.20353 0.88151 0.93377 1.50938 0.94177 1.19117 0.93022 1.04136 0.86261 1.23270 0.99547 1.01650 0.95496 1.86749 1.26853 1.61127 0.96441 1.26458 0.93976 0.86887 0.93028 1.69866 1.09522 1.24372 1.34014 1.18434 0.84297 0.82741 0.86413 1.90764 1.30430 1.40603 1.86278 1.22994 1.03394 1.05406 1.02093 1.22904 0.88095 0.94285 0.91057 1.44254 1.25056 1.36390 1.09093 1.22751 0.89396 0.99521 0.99712 1.23766 1.02152 0.95839 0.95799 1.23681 0.97439 1.00952 0.98070 1.22981 1.01617 0.94286 1.00415 1.23120 1.01857 0.94244 1.03711 0.92149 0.89991 0.89502 0.80763 0.75255 0.84463 0.84965 0.84789 0.85954 0.86759 0.87967 0.89381 0.87996 0.90227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.07 13.96 21.45 0.30 -52.77 16 2 C 0.05 2.54 5.07 84.65 0.43 2.97 16 3 Si 0.90 38.86 22.67 68.60 1.56 40.42 16 4 H -0.28 -11.99 7.02 99.48 0.70 -11.30 16 5 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 6 H -0.21 -8.19 5.56 99.48 0.55 -7.64 16 7 C -0.49 -25.62 8.50 25.60 0.22 -25.40 16 8 H 0.04 2.40 8.06 -2.92 -0.02 2.38 16 9 C -0.02 -1.00 1.39 -52.90 -0.07 -1.07 16 10 C -0.05 -2.07 4.96 71.98 0.36 -1.71 16 11 S 0.05 1.92 15.44 -56.49 -0.87 1.04 16 12 C 0.37 12.63 7.78 179.55 1.40 14.02 16 13 N -0.63 -25.77 9.20 -318.89 -2.93 -28.71 16 14 C 0.49 19.85 7.72 85.26 0.66 20.51 16 15 O -0.60 -29.31 17.97 -5.85 -0.11 -29.41 16 16 C -0.31 -8.33 10.03 22.43 0.22 -8.11 16 17 C 0.16 3.06 9.80 83.22 0.82 3.88 16 18 N -0.45 -10.98 3.00 -501.47 -1.51 -12.49 16 19 C -0.01 -0.19 6.08 44.99 0.27 0.08 16 20 C -0.14 -1.08 9.80 30.62 0.30 -0.78 16 21 C -0.16 -1.90 10.16 30.62 0.31 -1.59 16 22 C -0.15 -5.82 9.95 30.60 0.30 -5.52 16 23 C -0.19 -7.44 7.03 30.62 0.22 -7.22 16 24 H 0.27 14.36 8.31 -92.71 -0.77 13.59 16 25 H 0.08 3.47 8.14 -2.40 -0.02 3.45 16 26 H 0.09 3.39 7.86 -2.40 -0.02 3.37 16 27 H 0.17 3.75 8.06 -2.91 -0.02 3.73 16 28 H 0.23 1.35 6.05 -2.91 -0.02 1.33 16 29 H 0.14 3.06 6.63 -2.39 -0.02 3.04 16 30 H 0.13 0.33 6.24 -2.38 -0.01 0.32 16 31 H 0.13 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.11 1.15 8.14 -2.39 -0.02 1.14 16 34 H 0.10 3.37 8.14 -2.39 -0.02 3.35 16 35 H 0.09 3.38 8.14 -2.39 -0.02 3.36 16 36 H 0.10 3.46 8.08 -2.39 -0.02 3.44 16 37 H 0.08 3.24 6.18 -2.39 -0.01 3.23 16 Total: -1.00 -77.18 314.51 2.79 -74.38 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: 0.92 Total: 17.48 kcal Atomic # 6 Polarization: -15.37 SS G_CDS: 5.43 Total: -9.94 kcal Atomic # 7 Polarization: -89.83 SS G_CDS: -4.14 Total: -93.97 kcal Atomic # 8 Polarization: -29.31 SS G_CDS: -0.11 Total: -29.41 kcal Atomic # 14 Polarization: 38.86 SS G_CDS: 1.56 Total: 40.42 kcal Atomic # 16 Polarization: 1.92 SS G_CDS: -0.87 Total: 1.04 kcal Total: -77.18 2.79 -74.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594888037.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.634 kcal (2) G-P(sol) polarization free energy of solvation -77.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds