Wall clock time and date at job start Tue Mar 31 2020 06:55:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08991 * 109.47334 * 2 1 4 4 C 1.50701 * 109.46820 * 119.99800 * 2 1 3 5 5 H 1.08001 * 119.99800 * 120.00212 * 4 2 1 6 6 C 1.37873 * 120.00222 * 300.00214 * 4 2 1 7 7 N 1.31513 * 120.00005 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99989 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47079 * 90.00145 * 8 6 4 10 10 H 1.48503 * 109.46949 * 209.99520 * 8 6 4 11 11 H 1.48492 * 109.47260 * 329.99379 * 8 6 4 12 12 C 1.50702 * 109.47132 * 239.99645 * 2 1 3 13 13 N 1.31128 * 126.54616 * 120.25343 * 12 2 1 14 14 C 1.34502 * 105.61270 * 180.12195 * 13 12 2 15 15 C 1.50693 * 126.28938 * 179.90344 * 14 13 12 16 16 C 1.53003 * 109.47069 * 269.71370 * 15 14 13 17 17 C 1.53005 * 109.46776 * 180.02562 * 16 15 14 18 18 C 1.50700 * 109.46909 * 180.02562 * 17 16 15 19 19 C 1.38423 * 122.53613 * 270.00211 * 18 17 16 20 20 C 1.33390 * 114.91977 * 180.02562 * 19 18 17 21 21 S 1.75887 * 109.59565 * 359.75483 * 20 19 18 22 22 C 1.33391 * 122.54338 * 90.02238 * 18 17 16 23 23 N 1.29950 * 107.41993 * 359.64155 * 14 13 12 24 24 O 1.21294 * 110.25512 * 0.22454 * 23 14 13 25 25 H 1.09004 * 109.47059 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47540 * 300.00264 * 1 2 3 27 27 H 1.08998 * 109.47145 * 60.00104 * 1 2 3 28 28 H 0.97001 * 120.00209 * 180.02562 * 7 6 4 29 29 H 1.09005 * 109.47250 * 149.71188 * 15 14 13 30 30 H 1.09007 * 109.47222 * 29.71440 * 15 14 13 31 31 H 1.08994 * 109.46921 * 60.00192 * 16 15 14 32 32 H 1.08994 * 109.47207 * 299.99884 * 16 15 14 33 33 H 1.08994 * 109.47301 * 60.00348 * 17 16 15 34 34 H 1.09003 * 109.46866 * 299.99784 * 17 16 15 35 35 H 1.08001 * 122.54000 * 359.97438 * 19 18 17 36 36 H 1.07998 * 125.20164 * 180.02562 * 20 19 18 37 37 H 1.08002 * 125.19887 * 359.95301 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6991 -0.2394 2.4827 7 7 0.9434 0.8302 2.6034 8 14 2.3223 -1.1195 4.0080 9 1 3.6303 -0.5439 4.4120 10 1 1.3442 -0.9489 5.1123 11 1 2.4877 -2.5653 3.7123 12 6 2.0323 -0.7105 -1.2304 13 7 2.7930 -0.2021 -2.1698 14 6 2.9812 -1.1934 -3.0592 15 6 3.7885 -1.1110 -4.3290 16 6 2.8840 -0.6671 -5.4804 17 6 3.7036 -0.5841 -6.7698 18 6 2.8129 -0.1463 -7.9038 19 6 2.1203 -1.0454 -8.6963 20 6 1.3776 -0.4924 -9.6564 21 16 1.5290 1.2585 -9.5845 22 6 2.6324 1.1369 -8.2202 23 7 2.3437 -2.2369 -2.6194 24 8 1.7919 -1.9805 -1.5701 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 0.7093 1.1618 3.4844 29 1 4.2108 -2.0902 -4.5553 30 1 4.5946 -0.3885 -4.2008 31 1 2.4619 0.3119 -5.2541 32 1 2.0780 -1.3896 -5.6086 33 1 4.1254 -1.5634 -6.9959 34 1 4.5099 0.1381 -6.6419 35 1 2.1777 -2.1138 -8.5490 36 1 0.7721 -1.0363 -10.3662 37 1 3.0902 1.9734 -7.7132 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596591449.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:45 Heat of formation + Delta-G solvation = 74.990265 kcal Electronic energy + Delta-G solvation = -19815.790969 eV Core-core repulsion = 16687.380696 eV Total energy + Delta-G solvation = -3128.410273 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -44.71093 -38.71908 -35.87241 -35.05507 -33.73900 -31.92497 -30.25336 -29.45155 -27.42064 -25.38978 -23.98375 -23.40491 -22.44113 -21.57978 -19.79093 -18.89239 -17.79322 -17.33113 -16.66303 -16.06322 -15.62138 -15.19824 -14.69799 -14.13458 -13.78622 -13.75099 -13.18705 -13.00533 -12.89332 -12.74734 -12.02498 -11.99594 -11.82169 -11.60833 -11.54637 -11.19040 -11.04322 -10.97732 -10.77157 -10.66632 -10.54322 -10.37986 -10.27582 -10.05107 -9.46532 -9.01070 -8.86262 -8.58083 -8.55991 -6.22578 -4.31856 0.80461 1.46467 1.78388 2.01285 2.49091 3.00445 3.23354 3.30072 3.34910 3.86733 4.21095 4.32414 4.62372 4.72067 4.77109 4.98222 5.10849 5.11717 5.20832 5.33821 5.41122 5.53158 5.58142 5.68458 5.81803 5.94962 6.12259 6.19158 6.26144 6.33873 6.54744 6.59520 6.69856 6.85202 6.87771 7.38169 7.61951 7.79869 8.00150 8.67403 9.00504 9.34389 10.83677 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.033998 B = 0.002604 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.385131 B =10748.453756 C =11101.626158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.125 3.875 3 H 0.075 0.925 4 C -0.523 4.523 5 H 0.062 0.938 6 C 0.070 3.930 7 N -0.885 5.885 8 Si 0.904 3.096 9 H -0.278 1.278 10 H -0.283 1.283 11 H -0.271 1.271 12 C 0.243 3.757 13 N -0.516 5.516 14 C 0.157 3.843 15 C -0.021 4.021 16 C -0.106 4.106 17 C -0.059 4.059 18 C -0.098 4.098 19 C -0.129 4.129 20 C -0.213 4.213 21 S 0.083 5.917 22 C -0.209 4.209 23 N -0.411 5.411 24 O 0.068 5.932 25 H 0.039 0.961 26 H 0.101 0.899 27 H 0.016 0.984 28 H 0.267 0.733 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.140 0.860 36 H 0.163 0.837 37 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.431 -0.680 -20.755 20.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.105 3.895 3 H 0.092 0.908 4 C -0.562 4.562 5 H 0.080 0.920 6 C -0.133 4.133 7 N -0.522 5.522 8 Si 0.731 3.269 9 H -0.204 1.204 10 H -0.209 1.209 11 H -0.196 1.196 12 C 0.025 3.975 13 N -0.250 5.250 14 C -0.117 4.117 15 C -0.060 4.060 16 C -0.145 4.145 17 C -0.099 4.099 18 C -0.110 4.110 19 C -0.159 4.159 20 C -0.349 4.349 21 S 0.347 5.653 22 C -0.344 4.344 23 N -0.124 5.124 24 O 0.013 5.987 25 H 0.058 0.942 26 H 0.119 0.881 27 H 0.036 0.964 28 H 0.077 0.923 29 H 0.103 0.897 30 H 0.110 0.890 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.158 0.842 36 H 0.180 0.820 37 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 1.941 0.205 -22.082 22.168 hybrid contribution 0.779 -1.542 1.766 2.471 sum 2.720 -1.336 -20.315 20.540 Atomic orbital electron populations 1.21854 0.95604 1.00648 1.01602 1.17816 0.93819 0.95259 0.82651 0.90758 1.20877 1.32895 1.13201 0.89218 0.91974 1.24877 0.94515 0.94857 0.99063 1.69850 1.35687 1.22386 1.24256 0.86388 0.78667 0.80106 0.81760 1.20398 1.20858 1.19612 1.30161 0.89553 0.80976 0.96827 1.71953 1.19356 1.29744 1.03899 1.25646 1.00423 0.86201 0.99390 1.19830 0.96206 1.03305 0.86688 1.21512 0.98122 1.02698 0.92185 1.20334 0.96366 1.02088 0.91079 1.18969 1.00798 0.92291 0.98976 1.20150 0.98634 1.01168 0.95993 1.25590 1.07204 0.96796 1.05291 1.84272 1.44913 1.05034 1.31095 1.25513 1.05691 1.00529 1.02686 1.74506 1.14242 1.24399 0.99249 1.85243 1.54403 1.30663 1.28341 0.94186 0.88068 0.96443 0.92326 0.89662 0.89031 0.91065 0.91499 0.90597 0.90548 0.84195 0.81969 0.81773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 8.95 37.16 0.33 -2.84 16 2 C 0.12 3.06 2.77 -92.92 -0.26 2.80 16 3 H 0.07 1.92 8.14 -51.93 -0.42 1.50 16 4 C -0.52 -13.82 8.55 -34.44 -0.29 -14.11 16 5 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16 6 C 0.07 1.83 5.30 -17.82 -0.09 1.74 16 7 N -0.88 -23.57 11.32 55.43 0.63 -22.94 16 8 Si 0.90 20.40 29.54 -169.99 -5.02 15.38 16 9 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 10 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 11 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 12 C 0.24 5.61 6.96 -13.06 -0.09 5.52 16 13 N -0.52 -11.28 11.55 -9.87 -0.11 -11.39 16 14 C 0.16 3.00 7.47 -156.37 -1.17 1.84 16 15 C -0.02 -0.29 5.84 -27.88 -0.16 -0.45 16 16 C -0.11 -1.27 5.18 -26.73 -0.14 -1.41 16 17 C -0.06 -0.54 5.47 -27.88 -0.15 -0.69 16 18 C -0.10 -0.98 5.06 -106.25 -0.54 -1.51 16 19 C -0.13 -1.21 9.98 -41.21 -0.41 -1.63 16 20 C -0.21 -1.87 11.23 29.04 0.33 -1.54 16 21 S 0.08 0.75 23.34 -107.50 -2.51 -1.76 16 22 C -0.21 -2.02 10.98 29.04 0.32 -1.70 16 23 N -0.41 -8.59 12.16 30.90 0.38 -8.21 16 24 O 0.07 1.53 11.31 18.10 0.20 1.74 16 25 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.10 2.47 6.07 -51.93 -0.32 2.16 16 27 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 29 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.09 1.13 8.14 -51.92 -0.42 0.71 16 31 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.08 0.61 8.13 -51.93 -0.42 0.19 16 34 H 0.08 0.63 8.12 -51.93 -0.42 0.21 16 35 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 36 H 0.16 1.06 8.06 -52.49 -0.42 0.64 16 37 H 0.16 1.37 8.06 -52.49 -0.42 0.95 16 LS Contribution 333.80 15.07 5.03 5.03 Total: -1.00 -28.30 333.80 -8.66 -36.96 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: -4.93 Total: -0.81 kcal Atomic # 6 Polarization: -11.66 SS G_CDS: -2.33 Total: -13.99 kcal Atomic # 7 Polarization: -43.43 SS G_CDS: 0.89 Total: -42.54 kcal Atomic # 8 Polarization: 1.53 SS G_CDS: 0.20 Total: 1.74 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Atomic # 16 Polarization: 0.75 SS G_CDS: -2.51 Total: -1.76 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -28.30 -8.66 -36.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596591449.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.952 kcal (2) G-P(sol) polarization free energy of solvation -28.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.962 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds