Wall clock time and date at job start Tue Mar 31 2020 06:55:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08991 * 109.47334 * 2 1 4 4 C 1.50701 * 109.46820 * 119.99800 * 2 1 3 5 5 H 1.08001 * 119.99800 * 120.00212 * 4 2 1 6 6 C 1.37873 * 120.00222 * 300.00214 * 4 2 1 7 7 N 1.31513 * 120.00005 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99989 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47079 * 90.00145 * 8 6 4 10 10 H 1.48503 * 109.46949 * 209.99520 * 8 6 4 11 11 H 1.48492 * 109.47260 * 329.99379 * 8 6 4 12 12 C 1.50702 * 109.47132 * 239.99645 * 2 1 3 13 13 N 1.31128 * 126.54616 * 120.25343 * 12 2 1 14 14 C 1.34502 * 105.61270 * 180.12195 * 13 12 2 15 15 C 1.50693 * 126.28938 * 179.90344 * 14 13 12 16 16 C 1.53003 * 109.47069 * 269.71370 * 15 14 13 17 17 C 1.53005 * 109.46776 * 180.02562 * 16 15 14 18 18 C 1.50700 * 109.46909 * 180.02562 * 17 16 15 19 19 C 1.38423 * 122.53613 * 270.00211 * 18 17 16 20 20 C 1.33390 * 114.91977 * 180.02562 * 19 18 17 21 21 S 1.75887 * 109.59565 * 359.75483 * 20 19 18 22 22 C 1.33391 * 122.54338 * 90.02238 * 18 17 16 23 23 N 1.29950 * 107.41993 * 359.64155 * 14 13 12 24 24 O 1.21294 * 110.25512 * 0.22454 * 23 14 13 25 25 H 1.09004 * 109.47059 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47540 * 300.00264 * 1 2 3 27 27 H 1.08998 * 109.47145 * 60.00104 * 1 2 3 28 28 H 0.97001 * 120.00209 * 180.02562 * 7 6 4 29 29 H 1.09005 * 109.47250 * 149.71188 * 15 14 13 30 30 H 1.09007 * 109.47222 * 29.71440 * 15 14 13 31 31 H 1.08994 * 109.46921 * 60.00192 * 16 15 14 32 32 H 1.08994 * 109.47207 * 299.99884 * 16 15 14 33 33 H 1.08994 * 109.47301 * 60.00348 * 17 16 15 34 34 H 1.09003 * 109.46866 * 299.99784 * 17 16 15 35 35 H 1.08001 * 122.54000 * 359.97438 * 19 18 17 36 36 H 1.07998 * 125.20164 * 180.02562 * 20 19 18 37 37 H 1.08002 * 125.19887 * 359.95301 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6991 -0.2394 2.4827 7 7 0.9434 0.8302 2.6034 8 14 2.3223 -1.1195 4.0080 9 1 3.6303 -0.5439 4.4120 10 1 1.3442 -0.9489 5.1123 11 1 2.4877 -2.5653 3.7123 12 6 2.0323 -0.7105 -1.2304 13 7 2.7930 -0.2021 -2.1698 14 6 2.9812 -1.1934 -3.0592 15 6 3.7885 -1.1110 -4.3290 16 6 2.8840 -0.6671 -5.4804 17 6 3.7036 -0.5841 -6.7698 18 6 2.8129 -0.1463 -7.9038 19 6 2.1203 -1.0454 -8.6963 20 6 1.3776 -0.4924 -9.6564 21 16 1.5290 1.2585 -9.5845 22 6 2.6324 1.1369 -8.2202 23 7 2.3437 -2.2369 -2.6194 24 8 1.7919 -1.9805 -1.5701 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 0.7093 1.1618 3.4844 29 1 4.2108 -2.0902 -4.5553 30 1 4.5946 -0.3885 -4.2008 31 1 2.4619 0.3119 -5.2541 32 1 2.0780 -1.3896 -5.6086 33 1 4.1254 -1.5634 -6.9959 34 1 4.5099 0.1381 -6.6419 35 1 2.1777 -2.1138 -8.5490 36 1 0.7721 -1.0363 -10.3662 37 1 3.0902 1.9734 -7.7132 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596591449.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:44 Heat of formation + Delta-G solvation = 60.077395 kcal Electronic energy + Delta-G solvation = -19816.437640 eV Core-core repulsion = 16687.380696 eV Total energy + Delta-G solvation = -3129.056944 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -46.37772 -39.43820 -37.29275 -36.88165 -35.06678 -33.63920 -31.67278 -30.67687 -28.36618 -27.37857 -25.21769 -25.00040 -23.71591 -22.66479 -21.40627 -19.60969 -19.08650 -18.50423 -18.34561 -17.92203 -16.93435 -16.42342 -15.92284 -15.45434 -15.27574 -14.82577 -14.63953 -13.89489 -13.82859 -13.70357 -13.62603 -13.41910 -13.05991 -12.90006 -12.85357 -12.71279 -12.53748 -12.45928 -12.30485 -12.12444 -12.09277 -11.84207 -11.66451 -11.55106 -11.31638 -10.64502 -10.56272 -9.69807 -9.27359 -8.22254 -6.38920 0.11035 0.29539 0.79053 1.10094 1.35310 1.44839 1.46971 1.57042 1.79148 2.09146 2.40021 2.83819 3.07888 3.23786 3.87443 3.96571 4.07952 4.19413 4.33579 4.44676 4.55877 4.61587 4.66325 4.70420 4.76789 4.84033 4.88256 4.92958 5.02609 5.07854 5.11947 5.19150 5.29061 5.40618 5.55479 5.62110 5.64439 5.82635 6.03872 6.62854 7.29676 7.30480 8.83604 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.033998 B = 0.002604 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.385131 B =10748.453756 C =11101.626158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.126 3.874 3 H 0.054 0.946 4 C -0.544 4.544 5 H 0.052 0.948 6 C 0.031 3.969 7 N -0.905 5.905 8 Si 0.963 3.037 9 H -0.274 1.274 10 H -0.274 1.274 11 H -0.271 1.271 12 C 0.233 3.767 13 N -0.527 5.527 14 C 0.168 3.832 15 C -0.021 4.021 16 C -0.095 4.095 17 C -0.050 4.050 18 C -0.110 4.110 19 C -0.144 4.144 20 C -0.216 4.216 21 S 0.081 5.919 22 C -0.223 4.223 23 N -0.421 5.421 24 O 0.049 5.951 25 H 0.041 0.959 26 H 0.085 0.915 27 H 0.034 0.966 28 H 0.271 0.729 29 H 0.109 0.891 30 H 0.108 0.892 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.153 0.847 36 H 0.183 0.817 37 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.209 -1.308 -21.684 21.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.106 3.894 3 H 0.072 0.928 4 C -0.582 4.582 5 H 0.070 0.930 6 C -0.171 4.171 7 N -0.542 5.542 8 Si 0.788 3.212 9 H -0.200 1.200 10 H -0.199 1.199 11 H -0.196 1.196 12 C 0.014 3.986 13 N -0.262 5.262 14 C -0.106 4.106 15 C -0.060 4.060 16 C -0.135 4.135 17 C -0.090 4.090 18 C -0.122 4.122 19 C -0.174 4.174 20 C -0.351 4.351 21 S 0.345 5.655 22 C -0.358 4.358 23 N -0.137 5.137 24 O 0.000 6.000 25 H 0.060 0.940 26 H 0.103 0.897 27 H 0.053 0.947 28 H 0.081 0.919 29 H 0.127 0.873 30 H 0.126 0.874 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.111 0.889 34 H 0.107 0.893 35 H 0.170 0.830 36 H 0.200 0.800 37 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 2.700 -0.425 -23.001 23.162 hybrid contribution 0.546 -1.315 1.958 2.421 sum 3.245 -1.740 -21.043 21.362 Atomic orbital electron populations 1.21701 0.94613 1.00705 1.01606 1.17614 0.94638 0.94152 0.82993 0.92821 1.21047 1.33430 1.13295 0.90468 0.93014 1.25582 0.94527 0.95452 1.01492 1.69936 1.36029 1.23124 1.25101 0.85471 0.78326 0.78887 0.78535 1.19981 1.19925 1.19607 1.29854 0.90345 0.81447 0.96951 1.71972 1.19227 1.30683 1.04288 1.26612 0.99206 0.84735 1.00017 1.20176 0.96087 1.05306 0.84435 1.21394 0.97891 1.01261 0.92919 1.20278 0.96019 1.03492 0.89192 1.19144 1.01191 0.92499 0.99384 1.20380 0.98883 1.01906 0.96216 1.25910 1.07061 0.96646 1.05454 1.84269 1.44738 1.05612 1.30908 1.25750 1.06008 1.00970 1.03072 1.74503 1.15149 1.25010 0.98997 1.85226 1.55168 1.30381 1.29244 0.94007 0.89654 0.94712 0.91949 0.87317 0.87383 0.92732 0.92577 0.88907 0.89282 0.82966 0.80003 0.80972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.90 8.95 71.98 0.64 -5.26 16 2 C 0.13 6.31 2.77 -12.29 -0.03 6.28 16 3 H 0.05 2.87 8.14 -2.39 -0.02 2.85 16 4 C -0.54 -29.10 8.55 25.60 0.22 -28.88 16 5 H 0.05 2.81 7.74 -2.91 -0.02 2.79 16 6 C 0.03 1.61 5.30 84.65 0.45 2.06 16 7 N -0.90 -48.35 11.32 21.45 0.24 -48.11 16 8 Si 0.96 41.56 29.54 68.60 2.03 43.59 16 9 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 10 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 11 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 12 C 0.23 10.85 6.96 88.38 0.61 11.46 16 13 N -0.53 -22.91 11.55 -303.19 -3.50 -26.41 16 14 C 0.17 6.24 7.47 138.46 1.03 7.28 16 15 C -0.02 -0.53 5.84 29.85 0.17 -0.35 16 16 C -0.10 -2.10 5.18 30.60 0.16 -1.94 16 17 C -0.05 -0.80 5.47 29.85 0.16 -0.63 16 18 C -0.11 -1.99 5.06 -20.92 -0.11 -2.10 16 19 C -0.14 -2.44 9.98 21.22 0.21 -2.23 16 20 C -0.22 -3.41 11.23 66.72 0.75 -2.66 16 21 S 0.08 1.36 23.34 -56.49 -1.32 0.04 16 22 C -0.22 -4.03 10.98 66.72 0.73 -3.29 16 23 N -0.42 -17.31 12.16 -60.32 -0.73 -18.04 16 24 O 0.05 2.24 11.31 74.84 0.85 3.09 16 25 H 0.04 1.86 8.14 -2.38 -0.02 1.84 16 26 H 0.08 4.23 6.07 -2.39 -0.01 4.21 16 27 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.27 13.63 8.31 -92.71 -0.77 12.86 16 29 H 0.11 2.23 8.14 -2.38 -0.02 2.21 16 30 H 0.11 2.36 8.14 -2.38 -0.02 2.34 16 31 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.09 1.19 8.13 -2.39 -0.02 1.17 16 34 H 0.09 1.21 8.12 -2.39 -0.02 1.19 16 35 H 0.15 2.12 8.06 -2.91 -0.02 2.09 16 36 H 0.18 2.00 8.06 -2.91 -0.02 1.97 16 37 H 0.17 2.67 8.06 -2.91 -0.02 2.65 16 Total: -1.00 -59.97 333.80 3.64 -56.33 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: 1.07 Total: 9.79 kcal Atomic # 6 Polarization: -25.29 SS G_CDS: 5.01 Total: -20.28 kcal Atomic # 7 Polarization: -88.57 SS G_CDS: -3.99 Total: -92.56 kcal Atomic # 8 Polarization: 2.24 SS G_CDS: 0.85 Total: 3.09 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 2.03 Total: 43.59 kcal Atomic # 16 Polarization: 1.36 SS G_CDS: -1.32 Total: 0.04 kcal Total: -59.97 3.64 -56.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596591449.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.404 kcal (2) G-P(sol) polarization free energy of solvation -59.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.327 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds