Wall clock time and date at job start Tue Mar 31 2020 06:55:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47041 * 2 1 4 4 C 1.50700 * 109.47107 * 240.00246 * 2 1 3 5 5 H 1.08002 * 119.99485 * 245.46480 * 4 2 1 6 6 C 1.37866 * 120.00568 * 65.46064 * 4 2 1 7 7 N 1.31520 * 119.99730 * 9.56646 * 6 4 2 8 8 Si 1.86794 * 120.00455 * 189.56676 * 6 4 2 9 9 H 1.48504 * 109.47171 * 84.99630 * 8 6 4 10 10 H 1.48502 * 109.47588 * 204.99497 * 8 6 4 11 11 H 1.48500 * 109.47471 * 324.99769 * 8 6 4 12 12 C 1.50695 * 109.46873 * 119.99940 * 2 1 3 13 13 N 1.31131 * 126.55217 * 240.00127 * 12 2 1 14 14 C 1.34494 * 105.61872 * 180.02562 * 13 12 2 15 15 C 1.50702 * 126.29086 * 179.97438 * 14 13 12 16 16 C 1.52996 * 109.46586 * 90.00271 * 15 14 13 17 17 C 1.53002 * 109.46862 * 180.02562 * 16 15 14 18 18 C 1.50701 * 109.47222 * 180.02562 * 17 16 15 19 19 C 1.38424 * 122.53775 * 269.99932 * 18 17 16 20 20 C 1.33391 * 114.92062 * 180.02562 * 19 18 17 21 21 S 1.75881 * 109.59210 * 359.75429 * 20 19 18 22 22 C 1.33384 * 122.53963 * 90.02238 * 18 17 16 23 23 N 1.29951 * 107.42107 * 0.24049 * 14 13 12 24 24 O 1.21295 * 110.24972 * 359.58236 * 23 14 13 25 25 H 1.08998 * 109.47023 * 303.51322 * 1 2 3 26 26 H 1.09006 * 109.46729 * 63.51371 * 1 2 3 27 27 H 1.08997 * 109.47213 * 183.50816 * 1 2 3 28 28 H 0.96999 * 120.00158 * 179.97438 * 7 6 4 29 29 H 1.09000 * 109.46578 * 330.00405 * 15 14 13 30 30 H 1.09000 * 109.47267 * 210.00009 * 15 14 13 31 31 H 1.08992 * 109.47846 * 60.00573 * 16 15 14 32 32 H 1.09001 * 109.47621 * 299.99921 * 16 15 14 33 33 H 1.09003 * 109.47151 * 59.99653 * 17 16 15 34 34 H 1.09006 * 109.47252 * 299.99780 * 17 16 15 35 35 H 1.07997 * 122.53780 * 359.97438 * 19 18 17 36 36 H 1.07996 * 125.19989 * 180.02562 * 20 19 18 37 37 H 1.08000 * 125.20573 * 359.95744 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.5786 -1.6371 -1.1338 6 6 1.7947 -0.1774 -2.4796 7 7 1.2996 1.0357 -2.5935 8 14 2.1759 -1.1781 -4.0101 9 1 1.0237 -2.0609 -4.3240 10 1 2.4227 -0.2616 -5.1521 11 1 3.3842 -2.0076 -3.7710 12 6 2.0323 -0.7104 1.2304 13 7 2.7892 -0.2007 2.1722 14 6 2.9818 -1.1935 3.0589 15 6 3.7893 -1.1111 4.3286 16 6 2.8850 -0.6671 5.4801 17 6 3.7050 -0.5829 6.7691 18 6 2.8142 -0.1461 7.9035 19 6 2.6250 1.1853 8.2314 20 6 1.8059 1.3995 9.2622 21 16 1.2151 -0.1394 9.8755 22 6 2.1486 -1.0133 8.6678 23 7 2.3483 -2.2384 2.6167 24 8 1.7920 -1.9804 1.5701 25 1 -0.3633 0.5674 0.8568 26 1 -0.3633 0.4584 -0.9199 27 1 -0.3633 -1.0257 0.0629 28 1 1.1327 1.4109 -3.4723 29 1 4.5954 -0.3888 4.2002 30 1 4.2114 -2.0903 4.5549 31 1 2.0789 -1.3894 5.6085 32 1 2.4629 0.3120 5.2538 33 1 4.5109 0.1397 6.6405 34 1 4.1274 -1.5619 6.9956 35 1 3.1050 1.9898 7.6939 36 1 1.5422 2.3696 9.6567 37 1 2.1752 -2.0874 8.5589 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596591456.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:47 Heat of formation + Delta-G solvation = 73.678698 kcal Electronic energy + Delta-G solvation = -19809.664273 eV Core-core repulsion = 16681.197126 eV Total energy + Delta-G solvation = -3128.467147 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -44.71347 -38.71874 -35.87265 -35.03729 -33.72930 -31.93282 -30.28913 -29.50184 -27.41905 -25.36086 -23.98071 -23.44803 -22.45035 -21.58048 -19.80433 -18.89318 -17.81334 -17.32885 -16.63091 -16.05180 -15.71025 -15.12709 -14.69546 -14.15054 -13.85409 -13.65083 -13.19115 -12.99285 -12.89583 -12.74813 -12.04743 -12.00730 -11.86871 -11.65380 -11.55150 -11.26067 -10.99619 -10.97173 -10.79213 -10.65695 -10.60638 -10.43556 -10.28538 -10.00368 -9.48775 -9.01121 -8.88209 -8.56774 -8.56223 -6.25404 -4.30576 0.80318 1.46235 1.78033 2.00962 2.49645 3.00677 3.24218 3.30536 3.34483 3.86260 4.21415 4.32660 4.63756 4.70376 4.76859 4.99450 5.09830 5.11933 5.20004 5.34083 5.42857 5.51097 5.58590 5.68817 5.83277 5.95211 6.09872 6.20906 6.26118 6.33847 6.51537 6.53747 6.66642 6.81415 6.83810 7.35566 7.53972 7.72290 7.96529 8.68805 9.00313 9.34208 10.83532 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.035026 B = 0.002584 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.212403 B =10834.055496 C =11093.912818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.124 3.876 3 H 0.081 0.919 4 C -0.526 4.526 5 H 0.063 0.937 6 C 0.072 3.928 7 N -0.882 5.882 8 Si 0.901 3.099 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.273 1.273 12 C 0.243 3.757 13 N -0.514 5.514 14 C 0.157 3.843 15 C -0.021 4.021 16 C -0.106 4.106 17 C -0.059 4.059 18 C -0.096 4.096 19 C -0.128 4.128 20 C -0.212 4.212 21 S 0.081 5.919 22 C -0.211 4.211 23 N -0.411 5.411 24 O 0.066 5.934 25 H 0.022 0.978 26 H 0.084 0.916 27 H 0.041 0.959 28 H 0.267 0.733 29 H 0.092 0.908 30 H 0.085 0.915 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.142 0.858 36 H 0.163 0.837 37 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.822 -0.787 20.772 20.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.103 3.897 3 H 0.099 0.901 4 C -0.565 4.565 5 H 0.081 0.919 6 C -0.132 4.132 7 N -0.518 5.518 8 Si 0.728 3.272 9 H -0.201 1.201 10 H -0.210 1.210 11 H -0.198 1.198 12 C 0.025 3.975 13 N -0.248 5.248 14 C -0.116 4.116 15 C -0.060 4.060 16 C -0.145 4.145 17 C -0.099 4.099 18 C -0.109 4.109 19 C -0.159 4.159 20 C -0.347 4.347 21 S 0.344 5.656 22 C -0.347 4.347 23 N -0.124 5.124 24 O 0.012 5.988 25 H 0.041 0.959 26 H 0.102 0.898 27 H 0.060 0.940 28 H 0.077 0.923 29 H 0.110 0.890 30 H 0.103 0.897 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.160 0.840 36 H 0.181 0.819 37 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 0.997 -1.511 22.442 22.515 hybrid contribution 1.010 0.000 -2.133 2.360 sum 2.006 -1.511 20.309 20.464 Atomic orbital electron populations 1.21798 0.96042 1.00029 1.01309 1.17821 0.93348 0.95800 0.82708 0.90123 1.20843 1.37708 1.08630 0.89311 0.91924 1.24879 0.94573 0.94643 0.99079 1.69940 1.43617 1.13678 1.24611 0.86449 0.79039 0.79947 0.81749 1.20106 1.21023 1.19772 1.30138 0.89664 0.80956 0.96736 1.71953 1.19359 1.29690 1.03812 1.25649 1.00483 0.86087 0.99405 1.19830 0.96221 1.03304 0.86683 1.21509 0.98071 1.02701 0.92225 1.20340 0.96422 1.02050 0.91086 1.18975 1.00605 0.92622 0.98672 1.20173 1.00641 0.96888 0.98176 1.25596 1.04981 1.01265 1.02886 1.84253 1.48051 0.98280 1.34967 1.25483 1.04393 1.03430 1.01349 1.74506 1.14202 1.24341 0.99376 1.85237 1.54203 1.30736 1.28607 0.95927 0.89757 0.94032 0.92302 0.88994 0.89684 0.91565 0.90994 0.90391 0.90731 0.84032 0.81913 0.81914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.97 9.05 37.16 0.34 -2.64 16 2 C 0.12 3.02 2.63 -92.92 -0.24 2.77 16 3 H 0.08 2.11 8.09 -51.93 -0.42 1.69 16 4 C -0.53 -13.89 8.46 -34.44 -0.29 -14.18 16 5 H 0.06 1.67 7.76 -52.49 -0.41 1.27 16 6 C 0.07 1.89 5.17 -17.82 -0.09 1.80 16 7 N -0.88 -23.71 12.16 55.43 0.67 -23.03 16 8 Si 0.90 20.39 29.55 -169.99 -5.02 15.36 16 9 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 10 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 11 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 12 C 0.24 5.60 6.96 -13.06 -0.09 5.51 16 13 N -0.51 -11.25 11.55 -9.87 -0.11 -11.37 16 14 C 0.16 3.01 7.47 -156.37 -1.17 1.84 16 15 C -0.02 -0.29 5.84 -27.88 -0.16 -0.45 16 16 C -0.11 -1.26 5.18 -26.73 -0.14 -1.40 16 17 C -0.06 -0.54 5.47 -27.88 -0.15 -0.70 16 18 C -0.10 -0.96 5.06 -106.25 -0.54 -1.49 16 19 C -0.13 -1.23 9.98 -41.21 -0.41 -1.64 16 20 C -0.21 -1.87 11.23 29.04 0.33 -1.55 16 21 S 0.08 0.72 23.34 -107.50 -2.51 -1.79 16 22 C -0.21 -2.01 10.98 29.04 0.32 -1.69 16 23 N -0.41 -8.56 12.16 30.90 0.38 -8.18 16 24 O 0.07 1.49 11.31 18.11 0.20 1.69 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.08 2.00 6.83 -51.93 -0.35 1.64 16 27 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 29 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.08 0.64 8.13 -51.93 -0.42 0.22 16 34 H 0.07 0.60 8.12 -51.93 -0.42 0.18 16 35 H 0.14 1.18 8.06 -52.49 -0.42 0.75 16 36 H 0.16 1.09 8.06 -52.49 -0.42 0.66 16 37 H 0.16 1.31 8.06 -52.49 -0.42 0.89 16 LS Contribution 335.13 15.07 5.05 5.05 Total: -1.00 -28.45 335.13 -8.62 -37.06 By element: Atomic # 1 Polarization: 3.99 SS G_CDS: -4.97 Total: -0.98 kcal Atomic # 6 Polarization: -11.52 SS G_CDS: -2.31 Total: -13.83 kcal Atomic # 7 Polarization: -43.52 SS G_CDS: 0.94 Total: -42.58 kcal Atomic # 8 Polarization: 1.49 SS G_CDS: 0.20 Total: 1.69 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.36 kcal Atomic # 16 Polarization: 0.72 SS G_CDS: -2.51 Total: -1.79 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -28.45 -8.62 -37.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596591456.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.744 kcal (2) G-P(sol) polarization free energy of solvation -28.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.065 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds