Wall clock time and date at job start Tue Mar 31 2020 06:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47041 * 2 1 4 4 C 1.50700 * 109.47107 * 240.00246 * 2 1 3 5 5 H 1.08002 * 119.99485 * 245.46480 * 4 2 1 6 6 C 1.37866 * 120.00568 * 65.46064 * 4 2 1 7 7 N 1.31520 * 119.99730 * 9.56646 * 6 4 2 8 8 Si 1.86794 * 120.00455 * 189.56676 * 6 4 2 9 9 H 1.48504 * 109.47171 * 84.99630 * 8 6 4 10 10 H 1.48502 * 109.47588 * 204.99497 * 8 6 4 11 11 H 1.48500 * 109.47471 * 324.99769 * 8 6 4 12 12 C 1.50695 * 109.46873 * 119.99940 * 2 1 3 13 13 N 1.31131 * 126.55217 * 240.00127 * 12 2 1 14 14 C 1.34494 * 105.61872 * 180.02562 * 13 12 2 15 15 C 1.50702 * 126.29086 * 179.97438 * 14 13 12 16 16 C 1.52996 * 109.46586 * 90.00271 * 15 14 13 17 17 C 1.53002 * 109.46862 * 180.02562 * 16 15 14 18 18 C 1.50701 * 109.47222 * 180.02562 * 17 16 15 19 19 C 1.38424 * 122.53775 * 269.99932 * 18 17 16 20 20 C 1.33391 * 114.92062 * 180.02562 * 19 18 17 21 21 S 1.75881 * 109.59210 * 359.75429 * 20 19 18 22 22 C 1.33384 * 122.53963 * 90.02238 * 18 17 16 23 23 N 1.29951 * 107.42107 * 0.24049 * 14 13 12 24 24 O 1.21295 * 110.24972 * 359.58236 * 23 14 13 25 25 H 1.08998 * 109.47023 * 303.51322 * 1 2 3 26 26 H 1.09006 * 109.46729 * 63.51371 * 1 2 3 27 27 H 1.08997 * 109.47213 * 183.50816 * 1 2 3 28 28 H 0.96999 * 120.00158 * 179.97438 * 7 6 4 29 29 H 1.09000 * 109.46578 * 330.00405 * 15 14 13 30 30 H 1.09000 * 109.47267 * 210.00009 * 15 14 13 31 31 H 1.08992 * 109.47846 * 60.00573 * 16 15 14 32 32 H 1.09001 * 109.47621 * 299.99921 * 16 15 14 33 33 H 1.09003 * 109.47151 * 59.99653 * 17 16 15 34 34 H 1.09006 * 109.47252 * 299.99780 * 17 16 15 35 35 H 1.07997 * 122.53780 * 359.97438 * 19 18 17 36 36 H 1.07996 * 125.19989 * 180.02562 * 20 19 18 37 37 H 1.08000 * 125.20573 * 359.95744 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.5786 -1.6371 -1.1338 6 6 1.7947 -0.1774 -2.4796 7 7 1.2996 1.0357 -2.5935 8 14 2.1759 -1.1781 -4.0101 9 1 1.0237 -2.0609 -4.3240 10 1 2.4227 -0.2616 -5.1521 11 1 3.3842 -2.0076 -3.7710 12 6 2.0323 -0.7104 1.2304 13 7 2.7892 -0.2007 2.1722 14 6 2.9818 -1.1935 3.0589 15 6 3.7893 -1.1111 4.3286 16 6 2.8850 -0.6671 5.4801 17 6 3.7050 -0.5829 6.7691 18 6 2.8142 -0.1461 7.9035 19 6 2.6250 1.1853 8.2314 20 6 1.8059 1.3995 9.2622 21 16 1.2151 -0.1394 9.8755 22 6 2.1486 -1.0133 8.6678 23 7 2.3483 -2.2384 2.6167 24 8 1.7920 -1.9804 1.5701 25 1 -0.3633 0.5674 0.8568 26 1 -0.3633 0.4584 -0.9199 27 1 -0.3633 -1.0257 0.0629 28 1 1.1327 1.4109 -3.4723 29 1 4.5954 -0.3888 4.2002 30 1 4.2114 -2.0903 4.5549 31 1 2.0789 -1.3894 5.6085 32 1 2.4629 0.3120 5.2538 33 1 4.5109 0.1397 6.6405 34 1 4.1274 -1.5619 6.9956 35 1 3.1050 1.9898 7.6939 36 1 1.5422 2.3696 9.6567 37 1 2.1752 -2.0874 8.5589 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596591456.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:46 Heat of formation + Delta-G solvation = 58.572904 kcal Electronic energy + Delta-G solvation = -19810.319310 eV Core-core repulsion = 16681.197126 eV Total energy + Delta-G solvation = -3129.122183 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -46.37570 -39.43840 -37.28846 -36.85398 -35.05603 -33.66224 -31.72510 -30.68962 -28.36154 -27.33730 -25.24702 -25.00330 -23.73030 -22.65620 -21.41543 -19.61105 -19.08313 -18.53551 -18.31908 -17.91198 -16.93700 -16.44065 -15.84384 -15.51307 -15.24559 -14.81477 -14.61665 -13.91098 -13.83353 -13.80641 -13.61586 -13.40260 -13.14692 -12.88867 -12.80267 -12.72149 -12.52684 -12.46807 -12.37684 -12.14551 -12.06055 -11.82752 -11.64865 -11.55488 -11.33503 -10.63253 -10.57392 -9.69819 -9.27012 -8.25791 -6.38000 0.10951 0.29837 0.79099 1.09752 1.35772 1.45079 1.47543 1.56047 1.79235 2.09167 2.40258 2.84300 3.07119 3.23426 3.87195 3.96343 4.10513 4.16746 4.34929 4.42495 4.56457 4.62184 4.67029 4.68846 4.75429 4.81492 4.87409 4.92625 5.02734 5.07617 5.11472 5.20157 5.29070 5.39960 5.55004 5.62436 5.62884 5.72639 5.99488 6.64030 7.29956 7.30244 8.83175 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.035026 B = 0.002584 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.212403 B =10834.055496 C =11093.912818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.125 3.875 3 H 0.057 0.943 4 C -0.546 4.546 5 H 0.052 0.948 6 C 0.033 3.967 7 N -0.905 5.905 8 Si 0.961 3.039 9 H -0.268 1.268 10 H -0.278 1.278 11 H -0.274 1.274 12 C 0.233 3.767 13 N -0.527 5.527 14 C 0.167 3.833 15 C -0.021 4.021 16 C -0.095 4.095 17 C -0.050 4.050 18 C -0.110 4.110 19 C -0.145 4.145 20 C -0.216 4.216 21 S 0.082 5.918 22 C -0.222 4.222 23 N -0.421 5.421 24 O 0.050 5.950 25 H 0.039 0.961 26 H 0.068 0.932 27 H 0.047 0.953 28 H 0.271 0.729 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.151 0.849 36 H 0.182 0.818 37 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.477 -1.262 21.664 21.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.105 3.895 3 H 0.074 0.926 4 C -0.584 4.584 5 H 0.071 0.929 6 C -0.169 4.169 7 N -0.542 5.542 8 Si 0.785 3.215 9 H -0.193 1.193 10 H -0.203 1.203 11 H -0.199 1.199 12 C 0.014 3.986 13 N -0.262 5.262 14 C -0.106 4.106 15 C -0.060 4.060 16 C -0.134 4.134 17 C -0.090 4.090 18 C -0.122 4.122 19 C -0.175 4.175 20 C -0.351 4.351 21 S 0.346 5.654 22 C -0.357 4.357 23 N -0.137 5.137 24 O 0.000 6.000 25 H 0.058 0.942 26 H 0.087 0.913 27 H 0.066 0.934 28 H 0.080 0.920 29 H 0.126 0.874 30 H 0.126 0.874 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.169 0.831 36 H 0.199 0.801 37 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 1.632 -1.992 23.325 23.467 hybrid contribution 0.825 0.178 -2.307 2.457 sum 2.457 -1.814 21.018 21.239 Atomic orbital electron populations 1.21653 0.94679 1.00549 1.01230 1.17615 0.94447 0.94453 0.82988 0.92561 1.21023 1.38253 1.08556 0.90574 0.92936 1.25580 0.94306 0.95454 1.01561 1.70020 1.44055 1.14697 1.25449 0.85528 0.78879 0.78640 0.78432 1.19265 1.20321 1.19882 1.29838 0.90426 0.81448 0.96856 1.71971 1.19277 1.30674 1.04242 1.26607 0.99304 0.84638 1.00034 1.20173 0.96110 1.05266 0.84471 1.21391 0.97824 1.01290 0.92938 1.20280 0.96092 1.03412 0.89217 1.19134 1.01066 0.92907 0.99092 1.20392 1.01196 0.97192 0.98692 1.25905 1.04511 1.02052 1.02634 1.84240 1.47886 0.98458 1.34823 1.25739 1.04335 1.04202 1.01439 1.74501 1.15084 1.24923 0.99148 1.85219 1.54918 1.30394 1.29461 0.94154 0.91320 0.93377 0.91958 0.87379 0.87391 0.92667 0.92596 0.89078 0.89139 0.83144 0.80090 0.80797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.51 9.05 71.98 0.65 -4.86 16 2 C 0.13 6.23 2.63 -12.29 -0.03 6.20 16 3 H 0.06 3.04 8.09 -2.39 -0.02 3.02 16 4 C -0.55 -29.15 8.46 25.60 0.22 -28.93 16 5 H 0.05 2.85 7.76 -2.91 -0.02 2.82 16 6 C 0.03 1.72 5.17 84.65 0.44 2.16 16 7 N -0.91 -48.91 12.16 21.44 0.26 -48.65 16 8 Si 0.96 41.55 29.55 68.60 2.03 43.58 16 9 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 10 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 11 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 12 C 0.23 10.81 6.96 88.38 0.62 11.43 16 13 N -0.53 -22.94 11.55 -303.20 -3.50 -26.44 16 14 C 0.17 6.24 7.47 138.46 1.03 7.27 16 15 C -0.02 -0.53 5.84 29.85 0.17 -0.36 16 16 C -0.10 -2.10 5.18 30.59 0.16 -1.94 16 17 C -0.05 -0.80 5.47 29.85 0.16 -0.64 16 18 C -0.11 -1.99 5.06 -20.92 -0.11 -2.09 16 19 C -0.14 -2.54 9.98 21.22 0.21 -2.33 16 20 C -0.22 -3.49 11.23 66.72 0.75 -2.74 16 21 S 0.08 1.36 23.34 -56.49 -1.32 0.04 16 22 C -0.22 -3.88 10.98 66.72 0.73 -3.15 16 23 N -0.42 -17.23 12.16 -60.32 -0.73 -17.96 16 24 O 0.05 2.24 11.31 74.85 0.85 3.09 16 25 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 26 H 0.07 3.29 6.83 -2.38 -0.02 3.27 16 27 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 28 H 0.27 13.79 8.31 -92.71 -0.77 13.02 16 29 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 30 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 31 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.09 1.23 8.13 -2.39 -0.02 1.21 16 34 H 0.09 1.17 8.12 -2.38 -0.02 1.16 16 35 H 0.15 2.27 8.06 -2.91 -0.02 2.25 16 36 H 0.18 2.09 8.06 -2.91 -0.02 2.07 16 37 H 0.17 2.50 8.06 -2.91 -0.02 2.48 16 Total: -1.00 -60.33 335.13 3.65 -56.68 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: 1.07 Total: 9.66 kcal Atomic # 6 Polarization: -25.00 SS G_CDS: 5.01 Total: -19.99 kcal Atomic # 7 Polarization: -89.08 SS G_CDS: -3.97 Total: -93.05 kcal Atomic # 8 Polarization: 2.24 SS G_CDS: 0.85 Total: 3.09 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.03 Total: 43.58 kcal Atomic # 16 Polarization: 1.36 SS G_CDS: -1.32 Total: 0.04 kcal Total: -60.33 3.65 -56.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596591456.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.248 kcal (2) G-P(sol) polarization free energy of solvation -60.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds