Wall clock time and date at job start Tue Mar 31 2020 06:34:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.33817 * 124.52255 * 2 1 4 4 C 1.37468 * 115.10216 * 180.02562 * 3 2 1 5 5 C 1.50708 * 123.34865 * 179.97438 * 4 3 2 6 6 C 1.36644 * 113.29890 * 0.23361 * 4 3 2 7 7 C 1.46584 * 125.45800 * 179.74120 * 6 4 3 8 8 O 1.21696 * 120.00016 * 351.77689 * 7 6 4 9 9 N 1.34776 * 119.99549 * 171.77718 * 7 6 4 10 10 C 1.46501 * 120.00497 * 2.08424 * 9 7 6 11 11 C 1.50692 * 109.47347 * 82.39691 * 10 9 7 12 12 H 1.08001 * 120.00054 * 0.02562 * 11 10 9 13 13 C 1.37878 * 120.00000 * 180.02562 * 11 10 9 14 14 N 1.31518 * 120.00045 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00224 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.46944 * 359.97438 * 15 13 11 17 17 H 1.48496 * 109.47460 * 119.99771 * 15 13 11 18 18 H 1.48502 * 109.47348 * 240.00270 * 15 13 11 19 19 C 1.46498 * 119.99690 * 182.07936 * 9 7 6 20 20 C 1.53002 * 109.47219 * 94.94340 * 19 9 7 21 21 C 1.47201 * 109.47268 * 180.02562 * 20 19 9 22 22 N 9.29844 * 152.65599 * 156.39036 * 2 1 3 23 23 S 1.70616 * 124.52490 * 180.02562 * 2 1 3 24 24 H 1.08994 * 109.46837 * 90.00315 * 1 2 3 25 25 H 1.09005 * 109.46648 * 209.99843 * 1 2 3 26 26 H 1.08994 * 109.47337 * 329.99801 * 1 2 3 27 27 H 1.08007 * 122.44899 * 0.04446 * 3 2 1 28 28 H 1.09000 * 109.46732 * 90.02994 * 5 4 3 29 29 H 1.08997 * 109.47276 * 330.02679 * 5 4 3 30 30 H 1.09005 * 109.47033 * 210.02664 * 5 4 3 31 31 H 1.08996 * 109.46987 * 202.40096 * 10 9 7 32 32 H 1.09007 * 109.46720 * 322.39506 * 10 9 7 33 33 H 0.96996 * 119.99706 * 180.02562 * 14 13 11 34 34 H 1.09006 * 109.47142 * 214.94127 * 19 9 7 35 35 H 1.09000 * 109.47185 * 334.94236 * 19 9 7 36 36 H 1.09004 * 109.46878 * 299.99394 * 20 19 9 37 37 H 1.09000 * 109.47128 * 59.99861 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2654 1.1025 0.0000 4 6 3.6216 0.8775 -0.0006 5 6 4.6449 1.9839 -0.0012 6 6 3.9493 -0.4490 -0.0061 7 6 5.3124 -0.9881 -0.0134 8 8 6.2613 -0.2415 -0.1657 9 7 5.5148 -2.3107 0.1485 10 6 4.3707 -3.2155 0.2860 11 6 3.8319 -3.5552 -1.0797 12 1 4.2955 -3.1392 -1.9619 13 6 2.7471 -4.3972 -1.2029 14 7 2.1822 -4.9034 -0.1285 15 14 2.0795 -4.8189 -2.8958 16 1 2.8855 -4.1254 -3.9325 17 1 2.1577 -6.2867 -3.1072 18 1 0.6644 -4.3793 -2.9936 19 6 6.8788 -2.8437 0.1868 20 6 7.3383 -2.9649 1.6412 21 6 8.7092 -3.4998 1.6797 22 7 9.7665 -3.9136 1.7106 23 16 2.4740 -1.4057 -0.0006 24 1 -0.3633 -0.0001 -1.0276 25 1 -0.3633 -0.8901 0.5138 26 1 -0.3634 0.8899 0.5138 27 1 1.8429 2.0965 0.0007 28 1 4.8925 2.2504 1.0263 29 1 4.2380 2.8550 -0.5146 30 1 5.5446 1.6463 -0.5158 31 1 4.6883 -4.1289 0.7889 32 1 3.5917 -2.7294 0.8734 33 1 1.4192 -5.4960 -0.2153 34 1 6.8981 -3.8269 -0.2834 35 1 7.5471 -2.1708 -0.3505 36 1 7.3191 -1.9817 2.1114 37 1 6.6701 -3.6378 2.1785 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601010701.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:42 Heat of formation + Delta-G solvation = 13.603521 kcal Electronic energy + Delta-G solvation = -21131.115661 eV Core-core repulsion = 18000.043459 eV Total energy + Delta-G solvation = -3131.072202 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.39408 -37.52168 -36.58481 -35.24163 -33.21873 -32.08500 -31.24967 -27.93747 -27.46116 -26.87252 -23.84829 -23.21527 -21.28343 -19.92972 -17.67546 -17.36492 -17.17562 -16.70588 -15.44298 -15.24621 -14.68506 -14.53275 -14.39844 -13.94866 -13.64327 -13.21409 -12.92154 -12.76882 -12.54447 -12.52132 -12.45636 -12.24119 -12.17265 -12.10842 -11.66633 -11.27749 -11.17818 -11.16052 -10.97211 -10.77602 -10.69551 -10.31848 -9.98980 -9.19846 -9.13387 -8.82719 -8.14020 -7.80668 -7.41415 -6.43743 -4.45676 1.31513 2.52898 2.81670 2.92350 2.95942 3.03734 3.11148 3.20221 3.24808 3.63922 3.89438 4.16225 4.36002 4.91421 5.16265 5.29608 5.34438 5.48542 5.63468 5.65978 5.80283 5.84763 5.91960 6.03562 6.10844 6.17094 6.20791 6.22642 6.36557 6.57299 6.72145 6.80830 7.06620 7.15742 7.25652 7.52763 7.68158 7.68925 8.05698 8.54507 8.84512 9.15121 10.60653 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.011151 B = 0.007797 C = 0.005085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2510.339652 B = 3590.050177 C = 5505.052455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.294 4.294 3 C -0.171 4.171 4 C -0.044 4.044 5 C -0.099 4.099 6 C -0.303 4.303 7 C 0.596 3.404 8 O -0.560 6.560 9 N -0.599 5.599 10 C 0.225 3.775 11 C -0.538 4.538 12 H 0.070 0.930 13 C 0.077 3.923 14 N -0.876 5.876 15 Si 0.889 3.111 16 H -0.268 1.268 17 H -0.279 1.279 18 H -0.278 1.278 19 C 0.128 3.872 20 C -0.046 4.046 21 C 0.221 3.779 22 N -0.450 5.450 23 S 0.396 5.604 24 H 0.065 0.935 25 H 0.064 0.936 26 H 0.062 0.938 27 H 0.118 0.882 28 H 0.061 0.939 29 H 0.052 0.948 30 H 0.090 0.910 31 H 0.055 0.945 32 H 0.045 0.955 33 H 0.270 0.730 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.109 0.891 37 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.403 5.968 2.500 6.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.414 4.414 3 C -0.202 4.202 4 C -0.060 4.060 5 C -0.158 4.158 6 C -0.424 4.424 7 C 0.387 3.613 8 O -0.442 6.442 9 N -0.329 5.329 10 C 0.103 3.897 11 C -0.580 4.580 12 H 0.089 0.911 13 C -0.129 4.129 14 N -0.512 5.512 15 Si 0.716 3.284 16 H -0.192 1.192 17 H -0.205 1.205 18 H -0.203 1.203 19 C 0.002 3.998 20 C -0.088 4.088 21 C -0.097 4.097 22 N -0.127 5.127 23 S 0.674 5.326 24 H 0.084 0.916 25 H 0.083 0.917 26 H 0.081 0.919 27 H 0.136 0.864 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.109 0.891 31 H 0.073 0.927 32 H 0.062 0.938 33 H 0.080 0.920 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.127 0.873 37 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -0.905 4.053 2.557 4.877 hybrid contribution -0.849 1.395 -0.916 1.873 sum -1.754 5.448 1.641 5.954 Atomic orbital electron populations 1.20202 0.89236 1.02110 1.01887 1.25702 1.02364 1.04949 1.08340 1.19452 0.92147 0.98470 1.10142 1.19123 0.94296 0.93116 0.99493 1.20623 0.98477 0.94851 1.01822 1.24378 0.98313 0.97856 1.21877 1.17012 0.86988 0.81690 0.75628 1.90650 1.42876 1.58161 1.52517 1.47987 1.07229 1.06826 1.70867 1.19737 0.82458 0.89458 0.98090 1.21537 1.14659 1.29157 0.92641 0.91143 1.24884 0.96022 0.94772 0.97267 1.69903 1.22311 1.30850 1.28159 0.86533 0.79262 0.78594 0.84015 1.19244 1.20512 1.20338 1.21122 0.84366 1.01140 0.93153 1.19796 0.84690 1.02857 1.01432 1.29082 0.94779 0.92870 0.92937 1.81174 1.12610 1.10085 1.08830 1.85970 0.89762 0.97161 1.59721 0.91593 0.91716 0.91922 0.86450 0.92062 0.92891 0.89107 0.92676 0.93823 0.92001 0.89412 0.89399 0.87277 0.86927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.07 10.31 36.01 0.37 -0.70 16 2 C -0.29 -5.06 6.28 -35.86 -0.23 -5.28 16 3 C -0.17 -2.91 9.82 -41.41 -0.41 -3.32 16 4 C -0.04 -0.80 5.90 -105.47 -0.62 -1.42 16 5 C -0.10 -1.59 9.67 36.01 0.35 -1.24 16 6 C -0.30 -5.97 6.23 -36.79 -0.23 -6.20 16 7 C 0.60 11.90 7.55 -12.90 -0.10 11.80 16 8 O -0.56 -11.68 13.73 5.19 0.07 -11.61 16 9 N -0.60 -11.05 2.48 -176.64 -0.44 -11.49 16 10 C 0.22 4.54 4.76 -5.20 -0.02 4.52 16 11 C -0.54 -12.12 6.96 -34.44 -0.24 -12.36 16 12 H 0.07 1.68 7.81 -52.49 -0.41 1.27 16 13 C 0.08 1.76 5.02 -17.82 -0.09 1.67 16 14 N -0.88 -20.58 13.29 55.43 0.74 -19.84 16 15 Si 0.89 18.61 29.54 -169.99 -5.02 13.59 16 16 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 17 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 18 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 19 C 0.13 1.95 5.40 -4.04 -0.02 1.93 16 20 C -0.05 -0.57 6.02 -29.52 -0.18 -0.75 16 21 C 0.22 3.07 15.43 -20.77 -0.32 2.75 16 22 N -0.45 -7.31 18.54 42.15 0.78 -6.53 16 23 S 0.40 7.65 15.83 -107.50 -1.70 5.95 16 24 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 26 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.12 1.73 8.06 -52.48 -0.42 1.31 16 28 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.09 1.61 5.84 -51.93 -0.30 1.31 16 31 H 0.06 1.12 8.01 -51.93 -0.42 0.70 16 32 H 0.05 0.93 4.49 -22.29 -0.10 0.83 16 33 H 0.27 6.10 8.31 -40.82 -0.34 5.76 16 34 H 0.09 1.30 8.11 -51.93 -0.42 0.88 16 35 H 0.09 1.39 7.25 -51.93 -0.38 1.01 16 36 H 0.11 1.29 8.14 -51.93 -0.42 0.87 16 37 H 0.11 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 328.96 15.07 4.96 4.96 Total: -1.00 -26.04 328.96 -6.89 -32.93 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: -4.54 Total: 0.65 kcal Atomic # 6 Polarization: -6.86 SS G_CDS: -1.74 Total: -8.60 kcal Atomic # 7 Polarization: -38.94 SS G_CDS: 1.08 Total: -37.87 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: 0.07 Total: -11.61 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -5.02 Total: 13.59 kcal Atomic # 16 Polarization: 7.65 SS G_CDS: -1.70 Total: 5.95 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -26.04 -6.89 -32.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601010701.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.534 kcal (2) G-P(sol) polarization free energy of solvation -26.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds