Wall clock time and date at job start Tue Mar 31 2020 06:34:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.33817 * 124.52255 * 2 1 4 4 C 1.37468 * 115.10216 * 180.02562 * 3 2 1 5 5 C 1.50708 * 123.34865 * 179.97438 * 4 3 2 6 6 C 1.36644 * 113.29890 * 0.23361 * 4 3 2 7 7 C 1.46584 * 125.45800 * 179.74120 * 6 4 3 8 8 O 1.21696 * 120.00016 * 351.77689 * 7 6 4 9 9 N 1.34776 * 119.99549 * 171.77718 * 7 6 4 10 10 C 1.46501 * 120.00497 * 2.08424 * 9 7 6 11 11 C 1.50692 * 109.47347 * 82.39691 * 10 9 7 12 12 H 1.08001 * 120.00054 * 0.02562 * 11 10 9 13 13 C 1.37878 * 120.00000 * 180.02562 * 11 10 9 14 14 N 1.31518 * 120.00045 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00224 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.46944 * 359.97438 * 15 13 11 17 17 H 1.48496 * 109.47460 * 119.99771 * 15 13 11 18 18 H 1.48502 * 109.47348 * 240.00270 * 15 13 11 19 19 C 1.46498 * 119.99690 * 182.07936 * 9 7 6 20 20 C 1.53002 * 109.47219 * 94.94340 * 19 9 7 21 21 C 1.47201 * 109.47268 * 180.02562 * 20 19 9 22 22 N 9.29844 * 152.65599 * 156.39036 * 2 1 3 23 23 S 1.70616 * 124.52490 * 180.02562 * 2 1 3 24 24 H 1.08994 * 109.46837 * 90.00315 * 1 2 3 25 25 H 1.09005 * 109.46648 * 209.99843 * 1 2 3 26 26 H 1.08994 * 109.47337 * 329.99801 * 1 2 3 27 27 H 1.08007 * 122.44899 * 0.04446 * 3 2 1 28 28 H 1.09000 * 109.46732 * 90.02994 * 5 4 3 29 29 H 1.08997 * 109.47276 * 330.02679 * 5 4 3 30 30 H 1.09005 * 109.47033 * 210.02664 * 5 4 3 31 31 H 1.08996 * 109.46987 * 202.40096 * 10 9 7 32 32 H 1.09007 * 109.46720 * 322.39506 * 10 9 7 33 33 H 0.96996 * 119.99706 * 180.02562 * 14 13 11 34 34 H 1.09006 * 109.47142 * 214.94127 * 19 9 7 35 35 H 1.09000 * 109.47185 * 334.94236 * 19 9 7 36 36 H 1.09004 * 109.46878 * 299.99394 * 20 19 9 37 37 H 1.09000 * 109.47128 * 59.99861 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2654 1.1025 0.0000 4 6 3.6216 0.8775 -0.0006 5 6 4.6449 1.9839 -0.0012 6 6 3.9493 -0.4490 -0.0061 7 6 5.3124 -0.9881 -0.0134 8 8 6.2613 -0.2415 -0.1657 9 7 5.5148 -2.3107 0.1485 10 6 4.3707 -3.2155 0.2860 11 6 3.8319 -3.5552 -1.0797 12 1 4.2955 -3.1392 -1.9619 13 6 2.7471 -4.3972 -1.2029 14 7 2.1822 -4.9034 -0.1285 15 14 2.0795 -4.8189 -2.8958 16 1 2.8855 -4.1254 -3.9325 17 1 2.1577 -6.2867 -3.1072 18 1 0.6644 -4.3793 -2.9936 19 6 6.8788 -2.8437 0.1868 20 6 7.3383 -2.9649 1.6412 21 6 8.7092 -3.4998 1.6797 22 7 9.7665 -3.9136 1.7106 23 16 2.4740 -1.4057 -0.0006 24 1 -0.3633 -0.0001 -1.0276 25 1 -0.3633 -0.8901 0.5138 26 1 -0.3634 0.8899 0.5138 27 1 1.8429 2.0965 0.0007 28 1 4.8925 2.2504 1.0263 29 1 4.2380 2.8550 -0.5146 30 1 5.5446 1.6463 -0.5158 31 1 4.6883 -4.1289 0.7889 32 1 3.5917 -2.7294 0.8734 33 1 1.4192 -5.4960 -0.2153 34 1 6.8981 -3.8269 -0.2834 35 1 7.5471 -2.1708 -0.3505 36 1 7.3191 -1.9817 2.1114 37 1 6.6701 -3.6378 2.1785 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601010701.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:42 Heat of formation + Delta-G solvation = 1.690047 kcal Electronic energy + Delta-G solvation = -21131.632268 eV Core-core repulsion = 18000.043459 eV Total energy + Delta-G solvation = -3131.588809 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.87141 -38.88324 -37.83285 -36.74621 -34.81909 -33.43087 -32.54842 -29.33556 -28.98141 -28.16259 -25.26721 -24.76475 -22.59937 -21.33716 -19.08404 -18.79820 -18.56386 -18.28309 -16.87300 -16.64032 -16.26266 -15.89478 -15.77020 -15.26169 -14.91042 -14.51097 -14.38069 -14.20784 -14.01686 -13.79734 -13.74830 -13.54664 -13.46673 -13.41593 -12.98183 -12.78143 -12.72696 -12.54441 -12.28097 -12.23037 -12.05938 -11.79061 -11.67890 -10.74231 -10.57467 -10.50537 -9.64945 -9.21503 -8.88332 -8.17914 -6.22563 -0.10587 1.08713 1.40743 1.49593 1.54356 1.55912 1.61982 1.71128 1.78724 2.24047 2.41280 2.48452 3.15409 3.17561 3.85229 4.09325 4.12612 4.21849 4.48888 4.52378 4.55189 4.70722 4.79004 4.80497 4.83711 4.89539 4.93931 5.02614 5.11025 5.20463 5.30451 5.38831 5.64445 5.72396 5.81006 5.86241 6.00054 6.50181 6.54973 6.80325 7.30542 7.41668 8.85856 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.011151 B = 0.007797 C = 0.005085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2510.339652 B = 3590.050177 C = 5505.052455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.282 4.282 3 C -0.175 4.175 4 C -0.043 4.043 5 C -0.096 4.096 6 C -0.328 4.328 7 C 0.590 3.410 8 O -0.576 6.576 9 N -0.597 5.597 10 C 0.233 3.767 11 C -0.540 4.540 12 H 0.050 0.950 13 C 0.053 3.947 14 N -0.894 5.894 15 Si 0.925 3.075 16 H -0.277 1.277 17 H -0.279 1.279 18 H -0.274 1.274 19 C 0.124 3.876 20 C -0.031 4.031 21 C 0.246 3.754 22 N -0.489 5.489 23 S 0.345 5.655 24 H 0.076 0.924 25 H 0.065 0.935 26 H 0.088 0.912 27 H 0.147 0.853 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.055 0.945 32 H 0.045 0.955 33 H 0.271 0.729 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.121 0.879 37 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.499 7.220 2.864 8.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.401 4.401 3 C -0.205 4.205 4 C -0.061 4.061 5 C -0.154 4.154 6 C -0.449 4.449 7 C 0.381 3.619 8 O -0.460 6.460 9 N -0.326 5.326 10 C 0.110 3.890 11 C -0.581 4.581 12 H 0.069 0.931 13 C -0.151 4.151 14 N -0.531 5.531 15 Si 0.752 3.248 16 H -0.202 1.202 17 H -0.205 1.205 18 H -0.199 1.199 19 C -0.001 4.001 20 C -0.072 4.072 21 C -0.071 4.071 22 N -0.167 5.167 23 S 0.621 5.379 24 H 0.094 0.906 25 H 0.084 0.916 26 H 0.106 0.894 27 H 0.164 0.836 28 H 0.092 0.908 29 H 0.096 0.904 30 H 0.089 0.911 31 H 0.073 0.927 32 H 0.061 0.939 33 H 0.081 0.919 34 H 0.108 0.892 35 H 0.099 0.901 36 H 0.139 0.861 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -1.983 5.283 2.919 6.353 hybrid contribution -0.556 1.139 -1.046 1.643 sum -2.539 6.422 1.873 7.155 Atomic orbital electron populations 1.20338 0.86882 1.03488 1.02957 1.25955 1.03901 1.03622 1.06631 1.19741 0.91542 0.99742 1.09463 1.19575 0.95530 0.93117 0.97827 1.20624 0.97175 0.94949 1.02652 1.24490 0.98081 0.98570 1.23721 1.17172 0.87147 0.81999 0.75544 1.90635 1.43326 1.58485 1.53518 1.47955 1.07922 1.06312 1.70443 1.19551 0.82984 0.89553 0.96885 1.21507 1.14681 1.28988 0.92930 0.93142 1.25204 0.96224 0.94922 0.98783 1.69934 1.22768 1.31516 1.28888 0.85988 0.78850 0.78150 0.81830 1.20212 1.20476 1.19903 1.21230 0.82844 1.00887 0.95101 1.19709 0.83971 1.03917 0.99612 1.29167 0.94536 0.91705 0.91716 1.81203 1.13832 1.11575 1.10067 1.86004 0.90976 0.99160 1.61718 0.90554 0.91558 0.89358 0.83571 0.90816 0.90351 0.91102 0.92721 0.93873 0.91922 0.89150 0.90070 0.86143 0.84981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.97 10.31 71.24 0.73 -1.24 16 2 C -0.28 -9.09 6.28 24.68 0.15 -8.93 16 3 C -0.17 -5.46 9.82 21.08 0.21 -5.25 16 4 C -0.04 -1.51 5.90 -20.42 -0.12 -1.63 16 5 C -0.10 -2.87 9.67 71.24 0.69 -2.18 16 6 C -0.33 -12.76 6.23 24.08 0.15 -12.61 16 7 C 0.59 23.51 7.55 86.42 0.65 24.16 16 8 O -0.58 -23.97 13.73 -4.33 -0.06 -24.03 16 9 N -0.60 -21.95 2.48 -830.99 -2.06 -24.01 16 10 C 0.23 9.42 4.76 85.63 0.41 9.83 16 11 C -0.54 -24.50 6.96 25.60 0.18 -24.32 16 12 H 0.05 2.46 7.81 -2.91 -0.02 2.43 16 13 C 0.05 2.41 5.02 84.65 0.43 2.84 16 14 N -0.89 -41.80 13.29 21.45 0.28 -41.52 16 15 Si 0.93 37.95 29.54 68.60 2.03 39.97 16 16 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 17 H -0.28 -11.36 7.11 99.48 0.71 -10.65 16 18 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 19 C 0.12 3.72 5.40 86.38 0.47 4.19 16 20 C -0.03 -0.73 6.02 28.79 0.17 -0.55 16 21 C 0.25 6.58 15.43 89.44 1.38 7.96 16 22 N -0.49 -15.62 18.54 20.00 0.37 -15.25 16 23 S 0.34 13.17 15.83 -56.49 -0.89 12.27 16 24 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 25 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 26 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.15 3.70 8.06 -2.91 -0.02 3.68 16 28 H 0.07 2.02 8.14 -2.39 -0.02 2.01 16 29 H 0.08 1.92 8.14 -2.39 -0.02 1.91 16 30 H 0.07 2.45 5.84 -2.38 -0.01 2.43 16 31 H 0.05 2.20 8.01 -2.39 -0.02 2.18 16 32 H 0.04 1.84 4.49 -21.23 -0.10 1.75 16 33 H 0.27 12.17 8.31 -92.71 -0.77 11.40 16 34 H 0.09 2.65 8.11 -2.38 -0.02 2.64 16 35 H 0.08 2.56 7.25 -2.39 -0.02 2.54 16 36 H 0.12 2.65 8.14 -2.38 -0.02 2.63 16 37 H 0.13 2.66 8.14 -2.39 -0.02 2.64 16 Total: -1.00 -54.93 328.96 6.17 -48.76 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: 1.00 Total: 11.53 kcal Atomic # 6 Polarization: -13.24 SS G_CDS: 5.50 Total: -7.74 kcal Atomic # 7 Polarization: -79.37 SS G_CDS: -1.41 Total: -80.77 kcal Atomic # 8 Polarization: -23.97 SS G_CDS: -0.06 Total: -24.03 kcal Atomic # 14 Polarization: 37.95 SS G_CDS: 2.03 Total: 39.97 kcal Atomic # 16 Polarization: 13.17 SS G_CDS: -0.89 Total: 12.27 kcal Total: -54.93 6.17 -48.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601010701.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.454 kcal (2) G-P(sol) polarization free energy of solvation -54.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds