Wall clock time and date at job start Tue Mar 31 2020 06:17:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99830 * 2 1 4 4 H 1.48504 * 109.47353 * 240.00348 * 3 2 1 5 5 H 1.48496 * 109.47191 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46911 * 120.00531 * 3 2 1 7 7 C 1.37872 * 120.00183 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00460 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99899 * 0.02562 * 7 2 1 10 10 N 1.46505 * 109.47198 * 179.97438 * 9 7 2 11 11 C 1.46503 * 120.00032 * 89.99783 * 10 9 7 12 12 C 1.50695 * 109.47313 * 90.00128 * 11 10 9 13 13 C 1.38678 * 120.41675 * 270.25293 * 12 11 10 14 14 C 1.38627 * 118.41930 * 180.24221 * 13 12 11 15 15 C 1.38232 * 119.16085 * 359.75178 * 14 13 12 16 16 N 1.31857 * 120.76541 * 359.97438 * 15 14 13 17 17 C 1.31889 * 121.72235 * 0.02562 * 16 15 14 18 18 C 1.34778 * 119.99626 * 269.99560 * 10 9 7 19 19 O 1.21284 * 119.99808 * 179.97438 * 18 10 9 20 20 C 1.50699 * 120.00222 * 359.97438 * 18 10 9 21 21 C 1.53042 * 113.15272 * 280.37267 * 20 18 10 22 22 S 1.81421 * 89.89154 * 211.85430 * 21 20 18 23 23 C 1.53040 * 113.15176 * 179.97438 * 20 18 10 24 24 H 0.96998 * 119.99672 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47781 * 59.99756 * 9 7 2 26 26 H 1.09006 * 109.47155 * 299.99609 * 9 7 2 27 27 H 1.09001 * 109.46632 * 329.99937 * 11 10 9 28 28 H 1.08996 * 109.46728 * 209.99930 * 11 10 9 29 29 H 1.07994 * 120.78944 * 359.96926 * 13 12 11 30 30 H 1.07997 * 120.42083 * 179.72800 * 14 13 12 31 31 H 1.07999 * 119.61954 * 180.02562 * 15 14 13 32 32 H 1.08002 * 119.61237 * 179.97438 * 17 16 15 33 33 H 1.08999 * 112.49501 * 50.21685 * 20 18 10 34 34 H 1.09006 * 113.14931 * 327.11449 * 21 20 18 35 35 H 1.09000 * 113.14769 * 96.58899 * 21 20 18 36 36 H 1.09003 * 113.15201 * 263.41022 * 23 20 18 37 37 H 1.09010 * 113.14914 * 32.84623 * 23 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 7 2.2031 -3.6126 -0.0027 11 6 2.6792 -4.1705 1.2656 12 6 1.7626 -5.2851 1.6997 13 6 0.6595 -5.0170 2.4963 14 6 -0.1530 -6.0742 2.8756 15 6 0.1581 -7.3506 2.4459 16 7 1.2124 -7.5677 1.6843 17 6 2.0073 -6.5863 1.3043 18 6 2.6409 -4.1238 -1.1704 19 8 3.4294 -5.0454 -1.1713 20 6 2.1507 -3.5503 -2.4750 21 6 0.7607 -4.0546 -2.8694 22 16 1.2163 -3.9301 -4.6211 23 6 2.7476 -4.2464 -3.7003 24 1 -0.4849 0.8401 0.0004 25 1 0.6247 -2.5563 -0.8919 26 1 0.6241 -2.5575 0.8881 27 1 2.6869 -3.3895 2.0258 28 1 3.6886 -4.5604 1.1348 29 1 0.4412 -4.0092 2.8172 30 1 -1.0179 -5.9028 3.4992 31 1 -0.4700 -8.1797 2.7366 32 1 2.8620 -6.8029 0.6805 33 1 2.2404 -2.4647 -2.5132 34 1 0.5692 -5.0785 -2.5482 35 1 -0.0396 -3.3714 -2.5851 36 1 3.6111 -3.7238 -4.1118 37 1 2.9401 -5.3072 -3.5391 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601018877.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:18 Heat of formation + Delta-G solvation = 19.439971 kcal Electronic energy + Delta-G solvation = -21320.860604 eV Core-core repulsion = 18190.041489 eV Total energy + Delta-G solvation = -3130.819115 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.19453 -39.32015 -35.69059 -35.13594 -33.05500 -32.15742 -31.36643 -27.67504 -26.50826 -25.96878 -23.72507 -23.33242 -22.70633 -21.42055 -18.44979 -17.16255 -16.99159 -16.47526 -16.11057 -15.95359 -15.52285 -15.16937 -14.87729 -14.47108 -13.88166 -13.63213 -13.06803 -13.02252 -12.85627 -12.74805 -12.48744 -12.28988 -11.90052 -11.62749 -11.44032 -11.43029 -11.01158 -10.83604 -10.57843 -10.41411 -10.25705 -9.95066 -9.63802 -9.31855 -9.21346 -8.80011 -8.64846 -7.94693 -7.57803 -6.29699 -4.38240 1.25195 1.46911 1.94698 2.11057 3.11101 3.17936 3.24024 3.26837 3.66290 4.12268 4.24557 4.60258 4.64958 4.96275 5.03183 5.06439 5.10341 5.17923 5.20376 5.26008 5.39497 5.52040 5.61750 5.72379 5.85283 5.85606 6.01641 6.09348 6.28883 6.29031 6.49857 6.57214 6.89211 7.03182 7.32150 7.64015 7.91228 8.10010 8.14135 8.63045 8.78809 9.30821 10.76842 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.010524 B = 0.006923 C = 0.004808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2660.008939 B = 4043.792565 C = 5822.567726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.069 3.931 3 Si 0.896 3.104 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.545 4.545 8 H 0.062 0.938 9 C 0.236 3.764 10 N -0.585 5.585 11 C 0.160 3.840 12 C -0.146 4.146 13 C -0.058 4.058 14 C -0.178 4.178 15 C 0.089 3.911 16 N -0.492 5.492 17 C 0.116 3.884 18 C 0.532 3.468 19 O -0.565 6.565 20 C -0.107 4.107 21 C -0.062 4.062 22 S -0.303 6.303 23 C -0.058 4.058 24 H 0.267 0.733 25 H 0.042 0.958 26 H 0.036 0.964 27 H 0.091 0.909 28 H 0.086 0.914 29 H 0.137 0.863 30 H 0.131 0.869 31 H 0.150 0.850 32 H 0.158 0.842 33 H 0.145 0.855 34 H 0.100 0.900 35 H 0.109 0.891 36 H 0.097 0.903 37 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.400 -7.918 2.167 8.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.135 4.135 3 Si 0.724 3.276 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.583 4.583 8 H 0.080 0.920 9 C 0.116 3.884 10 N -0.314 5.314 11 C 0.036 3.964 12 C -0.149 4.149 13 C -0.085 4.085 14 C -0.198 4.198 15 C -0.068 4.068 16 N -0.200 5.200 17 C -0.041 4.041 18 C 0.317 3.683 19 O -0.445 6.445 20 C -0.129 4.129 21 C -0.210 4.210 22 S -0.076 6.076 23 C -0.206 4.206 24 H 0.077 0.923 25 H 0.060 0.940 26 H 0.054 0.946 27 H 0.110 0.890 28 H 0.104 0.896 29 H 0.155 0.845 30 H 0.149 0.851 31 H 0.167 0.833 32 H 0.176 0.824 33 H 0.163 0.837 34 H 0.119 0.881 35 H 0.127 0.873 36 H 0.116 0.884 37 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 0.257 -8.875 0.538 8.895 hybrid contribution 0.366 1.864 1.370 2.342 sum 0.624 -7.011 1.907 7.293 Atomic orbital electron populations 1.69897 1.06016 1.27630 1.49058 1.24922 0.94841 0.99301 0.94468 0.86574 0.79602 0.82538 0.78916 1.19949 1.21116 1.20115 1.21432 0.93646 0.90333 1.52907 0.91955 1.19536 0.87487 0.82426 0.98913 1.48235 1.45309 1.34262 1.03592 1.20159 0.95997 0.93307 0.86959 1.21427 0.98064 0.96838 0.98608 1.21643 0.92641 0.99802 0.94411 1.22109 1.01195 0.94055 1.02446 1.22711 0.94036 0.96093 0.93971 1.67719 1.04702 1.36171 1.11453 1.22849 0.97638 0.88044 0.95591 1.20072 0.80740 0.82207 0.85238 1.90592 1.36081 1.30181 1.87691 1.22702 0.93755 1.04125 0.92355 1.24194 1.00755 1.05184 0.90882 1.88782 1.11320 1.94433 1.13066 1.24189 0.97720 1.05108 0.93627 0.92321 0.94043 0.94598 0.89042 0.89565 0.84509 0.85069 0.83288 0.82429 0.83747 0.88106 0.87266 0.88439 0.86964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.98 13.29 55.43 0.74 -22.24 16 2 C 0.07 1.69 5.46 -17.82 -0.10 1.60 16 3 Si 0.90 19.51 29.54 -169.99 -5.02 14.49 16 4 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16 5 H -0.29 -6.24 7.11 56.52 0.40 -5.84 16 6 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 7 C -0.54 -12.94 9.11 -34.44 -0.31 -13.25 16 8 H 0.06 1.50 7.81 -52.49 -0.41 1.09 16 9 C 0.24 5.00 4.87 -5.19 -0.03 4.97 16 10 N -0.58 -10.85 2.44 -176.43 -0.43 -11.28 16 11 C 0.16 2.62 5.56 -5.19 -0.03 2.59 16 12 C -0.15 -2.26 5.48 -104.48 -0.57 -2.83 16 13 C -0.06 -0.83 9.86 -39.28 -0.39 -1.22 16 14 C -0.18 -2.22 10.11 -39.44 -0.40 -2.62 16 15 C 0.09 1.16 11.18 -17.54 -0.20 0.97 16 16 N -0.49 -7.68 10.36 -13.25 -0.14 -7.81 16 17 C 0.12 1.84 10.86 -17.55 -0.19 1.65 16 18 C 0.53 9.79 7.17 -10.99 -0.08 9.71 16 19 O -0.56 -10.99 15.08 5.55 0.08 -10.90 16 20 C -0.11 -1.81 2.54 -91.73 -0.23 -2.04 16 21 C -0.06 -0.98 6.83 37.18 0.25 -0.73 16 22 S -0.30 -4.84 24.80 -107.50 -2.67 -7.51 16 23 C -0.06 -0.88 7.18 37.18 0.27 -0.61 16 24 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 25 H 0.04 0.91 5.33 -51.93 -0.28 0.63 16 26 H 0.04 0.80 8.07 -51.93 -0.42 0.38 16 27 H 0.09 1.46 8.03 -51.93 -0.42 1.04 16 28 H 0.09 1.39 7.37 -51.93 -0.38 1.00 16 29 H 0.14 1.87 8.06 -52.49 -0.42 1.44 16 30 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 31 H 0.15 1.48 8.06 -52.49 -0.42 1.06 16 32 H 0.16 2.53 7.62 -52.49 -0.40 2.13 16 33 H 0.14 2.66 7.64 -51.93 -0.40 2.26 16 34 H 0.10 1.54 8.11 -51.93 -0.42 1.12 16 35 H 0.11 1.80 7.17 -51.93 -0.37 1.43 16 36 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 37 H 0.11 1.69 7.57 -51.92 -0.39 1.30 16 LS Contribution 328.39 15.07 4.95 4.95 Total: -1.00 -26.88 328.39 -9.20 -36.08 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -4.71 Total: 6.04 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: -2.00 Total: -1.81 kcal Atomic # 7 Polarization: -41.50 SS G_CDS: 0.17 Total: -41.33 kcal Atomic # 8 Polarization: -10.99 SS G_CDS: 0.08 Total: -10.90 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.02 Total: 14.49 kcal Atomic # 16 Polarization: -4.84 SS G_CDS: -2.67 Total: -7.51 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -26.88 -9.20 -36.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601018877.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.518 kcal (2) G-P(sol) polarization free energy of solvation -26.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds