Wall clock time and date at job start Tue Mar 31 2020 06:17:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99830 * 2 1 4 4 H 1.48504 * 109.47353 * 240.00348 * 3 2 1 5 5 H 1.48496 * 109.47191 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46911 * 120.00531 * 3 2 1 7 7 C 1.37872 * 120.00183 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00460 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99899 * 0.02562 * 7 2 1 10 10 N 1.46505 * 109.47198 * 179.97438 * 9 7 2 11 11 C 1.46503 * 120.00032 * 89.99783 * 10 9 7 12 12 C 1.50695 * 109.47313 * 90.00128 * 11 10 9 13 13 C 1.38678 * 120.41675 * 270.25293 * 12 11 10 14 14 C 1.38627 * 118.41930 * 180.24221 * 13 12 11 15 15 C 1.38232 * 119.16085 * 359.75178 * 14 13 12 16 16 N 1.31857 * 120.76541 * 359.97438 * 15 14 13 17 17 C 1.31889 * 121.72235 * 0.02562 * 16 15 14 18 18 C 1.34778 * 119.99626 * 269.99560 * 10 9 7 19 19 O 1.21284 * 119.99808 * 179.97438 * 18 10 9 20 20 C 1.50699 * 120.00222 * 359.97438 * 18 10 9 21 21 C 1.53042 * 113.15272 * 280.37267 * 20 18 10 22 22 S 1.81421 * 89.89154 * 211.85430 * 21 20 18 23 23 C 1.53040 * 113.15176 * 179.97438 * 20 18 10 24 24 H 0.96998 * 119.99672 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47781 * 59.99756 * 9 7 2 26 26 H 1.09006 * 109.47155 * 299.99609 * 9 7 2 27 27 H 1.09001 * 109.46632 * 329.99937 * 11 10 9 28 28 H 1.08996 * 109.46728 * 209.99930 * 11 10 9 29 29 H 1.07994 * 120.78944 * 359.96926 * 13 12 11 30 30 H 1.07997 * 120.42083 * 179.72800 * 14 13 12 31 31 H 1.07999 * 119.61954 * 180.02562 * 15 14 13 32 32 H 1.08002 * 119.61237 * 179.97438 * 17 16 15 33 33 H 1.08999 * 112.49501 * 50.21685 * 20 18 10 34 34 H 1.09006 * 113.14931 * 327.11449 * 21 20 18 35 35 H 1.09000 * 113.14769 * 96.58899 * 21 20 18 36 36 H 1.09003 * 113.15201 * 263.41022 * 23 20 18 37 37 H 1.09010 * 113.14914 * 32.84623 * 23 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 7 2.2031 -3.6126 -0.0027 11 6 2.6792 -4.1705 1.2656 12 6 1.7626 -5.2851 1.6997 13 6 0.6595 -5.0170 2.4963 14 6 -0.1530 -6.0742 2.8756 15 6 0.1581 -7.3506 2.4459 16 7 1.2124 -7.5677 1.6843 17 6 2.0073 -6.5863 1.3043 18 6 2.6409 -4.1238 -1.1704 19 8 3.4294 -5.0454 -1.1713 20 6 2.1507 -3.5503 -2.4750 21 6 0.7607 -4.0546 -2.8694 22 16 1.2163 -3.9301 -4.6211 23 6 2.7476 -4.2464 -3.7003 24 1 -0.4849 0.8401 0.0004 25 1 0.6247 -2.5563 -0.8919 26 1 0.6241 -2.5575 0.8881 27 1 2.6869 -3.3895 2.0258 28 1 3.6886 -4.5604 1.1348 29 1 0.4412 -4.0092 2.8172 30 1 -1.0179 -5.9028 3.4992 31 1 -0.4700 -8.1797 2.7366 32 1 2.8620 -6.8029 0.6805 33 1 2.2404 -2.4647 -2.5132 34 1 0.5692 -5.0785 -2.5482 35 1 -0.0396 -3.3714 -2.5851 36 1 3.6111 -3.7238 -4.1118 37 1 2.9401 -5.3072 -3.5391 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601018877.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:18 Heat of formation + Delta-G solvation = 6.361432 kcal Electronic energy + Delta-G solvation = -21321.427732 eV Core-core repulsion = 18190.041489 eV Total energy + Delta-G solvation = -3131.386243 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.47223 -40.62960 -37.10294 -36.61190 -34.75090 -33.45613 -32.55534 -29.32177 -27.89594 -27.25979 -25.29177 -24.50006 -24.15721 -22.65849 -19.89819 -18.79161 -18.32769 -17.88246 -17.46889 -17.16035 -16.90839 -16.56346 -16.37346 -15.93403 -15.18265 -14.90437 -14.40106 -14.27505 -14.24826 -14.04326 -13.92565 -13.62904 -13.43613 -13.09919 -13.03826 -12.80956 -12.54802 -12.46615 -12.05891 -11.89399 -11.74209 -11.68445 -10.84563 -10.63633 -10.54107 -10.41869 -9.93728 -9.49974 -8.87193 -8.18296 -6.31675 0.14424 0.35448 0.65228 0.82465 1.44869 1.47293 1.52795 1.65831 2.26078 2.45272 2.96242 3.13583 3.29868 3.55147 3.62876 3.81443 3.89412 3.94092 4.04652 4.12828 4.14457 4.28238 4.42051 4.51397 4.60202 4.71247 4.78158 4.87445 4.89987 4.95359 5.20154 5.28365 5.38439 5.66337 5.79481 5.81378 6.07754 6.52067 6.81758 7.03214 7.23792 7.41596 8.86660 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.010524 B = 0.006923 C = 0.004808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2660.008939 B = 4043.792565 C = 5822.567726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.028 3.972 3 Si 0.948 3.052 4 H -0.273 1.273 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.547 4.547 8 H 0.056 0.944 9 C 0.252 3.748 10 N -0.586 5.586 11 C 0.160 3.840 12 C -0.155 4.155 13 C -0.068 4.068 14 C -0.168 4.168 15 C 0.088 3.912 16 N -0.513 5.513 17 C 0.105 3.895 18 C 0.531 3.469 19 O -0.575 6.575 20 C -0.108 4.108 21 C -0.054 4.054 22 S -0.308 6.308 23 C -0.046 4.046 24 H 0.267 0.733 25 H 0.035 0.965 26 H 0.025 0.975 27 H 0.092 0.908 28 H 0.086 0.914 29 H 0.140 0.860 30 H 0.165 0.835 31 H 0.184 0.816 32 H 0.148 0.852 33 H 0.130 0.870 34 H 0.108 0.892 35 H 0.101 0.899 36 H 0.111 0.889 37 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.085 -8.340 2.630 8.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.173 4.173 3 Si 0.774 3.226 4 H -0.198 1.198 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.585 4.585 8 H 0.074 0.926 9 C 0.131 3.869 10 N -0.315 5.315 11 C 0.037 3.963 12 C -0.158 4.158 13 C -0.094 4.094 14 C -0.187 4.187 15 C -0.069 4.069 16 N -0.222 5.222 17 C -0.052 4.052 18 C 0.317 3.683 19 O -0.456 6.456 20 C -0.131 4.131 21 C -0.203 4.203 22 S -0.082 6.082 23 C -0.194 4.194 24 H 0.076 0.924 25 H 0.053 0.947 26 H 0.043 0.957 27 H 0.111 0.889 28 H 0.104 0.896 29 H 0.157 0.843 30 H 0.183 0.817 31 H 0.201 0.799 32 H 0.165 0.835 33 H 0.147 0.853 34 H 0.126 0.874 35 H 0.120 0.880 36 H 0.130 0.870 37 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -0.038 -9.306 1.003 9.360 hybrid contribution 0.440 1.933 1.273 2.356 sum 0.401 -7.373 2.276 7.727 Atomic orbital electron populations 1.69980 1.07051 1.28116 1.50315 1.25523 0.95423 1.01879 0.94454 0.85757 0.78501 0.79483 0.78849 1.19832 1.21163 1.19759 1.21655 0.93459 0.91470 1.51947 0.92583 1.19175 0.87390 0.82362 0.97930 1.48184 1.44942 1.33748 1.04602 1.20204 0.96308 0.93706 0.86065 1.21270 0.98662 0.96230 0.99680 1.21808 0.92612 1.00663 0.94365 1.22460 1.01427 0.93153 1.01690 1.23321 0.93338 0.97526 0.92687 1.67724 1.05686 1.36274 1.12472 1.22705 0.97915 0.88379 0.96207 1.20277 0.80470 0.82008 0.85568 1.90586 1.36522 1.30647 1.87872 1.22637 0.94798 1.03277 0.92386 1.24119 0.99900 1.05313 0.90941 1.88817 1.11990 1.94511 1.12834 1.24139 0.97754 1.05247 0.92302 0.92432 0.94742 0.95658 0.88940 0.89607 0.84261 0.81721 0.79906 0.83502 0.85258 0.87359 0.88040 0.87017 0.86574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -47.35 13.29 21.45 0.28 -47.06 16 2 C 0.03 1.38 5.46 84.65 0.46 1.85 16 3 Si 0.95 39.64 29.54 68.60 2.03 41.67 16 4 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 5 H -0.29 -11.92 7.11 99.48 0.71 -11.21 16 6 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 7 C -0.55 -25.94 9.11 25.60 0.23 -25.71 16 8 H 0.06 2.69 7.81 -2.91 -0.02 2.67 16 9 C 0.25 10.72 4.87 85.63 0.42 11.14 16 10 N -0.59 -21.76 2.44 -830.48 -2.03 -23.79 16 11 C 0.16 5.27 5.56 85.63 0.48 5.75 16 12 C -0.16 -4.74 5.48 -19.77 -0.11 -4.85 16 13 C -0.07 -1.85 9.86 22.47 0.22 -1.62 16 14 C -0.17 -3.74 10.11 22.36 0.23 -3.52 16 15 C 0.09 2.08 11.18 84.69 0.95 3.03 16 16 N -0.51 -15.37 10.36 -195.83 -2.03 -17.40 16 17 C 0.10 3.29 10.86 84.67 0.92 4.21 16 18 C 0.53 19.45 7.17 87.66 0.63 20.08 16 19 O -0.57 -22.19 15.08 -3.04 -0.05 -22.24 16 20 C -0.11 -3.62 2.54 -11.51 -0.03 -3.65 16 21 C -0.05 -1.70 6.83 72.00 0.49 -1.21 16 22 S -0.31 -9.56 24.80 -56.49 -1.40 -10.96 16 23 C -0.05 -1.34 7.18 72.00 0.52 -0.83 16 24 H 0.27 13.29 8.31 -92.71 -0.77 12.52 16 25 H 0.03 1.53 5.33 -2.39 -0.01 1.51 16 26 H 0.03 1.14 8.07 -2.38 -0.02 1.12 16 27 H 0.09 2.96 8.03 -2.39 -0.02 2.94 16 28 H 0.09 2.79 7.37 -2.39 -0.02 2.78 16 29 H 0.14 3.67 8.06 -2.91 -0.02 3.65 16 30 H 0.17 2.54 8.06 -2.91 -0.02 2.52 16 31 H 0.18 2.95 8.06 -2.91 -0.02 2.93 16 32 H 0.15 4.81 7.62 -2.91 -0.02 4.79 16 33 H 0.13 4.77 7.64 -2.39 -0.02 4.76 16 34 H 0.11 3.24 8.11 -2.38 -0.02 3.22 16 35 H 0.10 3.35 7.17 -2.39 -0.02 3.33 16 36 H 0.11 2.94 8.14 -2.39 -0.02 2.92 16 37 H 0.12 3.35 7.57 -2.38 -0.02 3.33 16 Total: -1.00 -55.69 328.39 3.29 -52.40 By element: Atomic # 1 Polarization: 21.65 SS G_CDS: 1.07 Total: 22.72 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: 5.40 Total: 4.66 kcal Atomic # 7 Polarization: -84.48 SS G_CDS: -3.77 Total: -88.26 kcal Atomic # 8 Polarization: -22.19 SS G_CDS: -0.05 Total: -22.24 kcal Atomic # 14 Polarization: 39.64 SS G_CDS: 2.03 Total: 41.67 kcal Atomic # 16 Polarization: -9.56 SS G_CDS: -1.40 Total: -10.96 kcal Total: -55.69 3.29 -52.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601018877.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.762 kcal (2) G-P(sol) polarization free energy of solvation -55.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds