Wall clock time and date at job start Tue Mar 31 2020 06:18:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99933 * 2 1 4 4 H 1.48502 * 109.46576 * 239.99887 * 3 2 1 5 5 H 1.48498 * 109.47091 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47146 * 119.99806 * 3 2 1 7 7 C 1.37872 * 119.99973 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99959 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00057 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.47178 * 179.97438 * 9 7 2 11 11 C 1.46504 * 120.00383 * 89.99721 * 10 9 7 12 12 C 1.50707 * 109.46935 * 270.00600 * 11 10 9 13 13 C 1.38227 * 119.62059 * 95.01845 * 12 11 10 14 14 C 1.38627 * 119.15702 * 179.74122 * 13 12 11 15 15 C 1.38669 * 118.42389 * 0.47826 * 14 13 12 16 16 C 1.38186 * 119.16143 * 359.49762 * 15 14 13 17 17 N 1.31856 * 119.61137 * 274.99275 * 12 11 10 18 18 C 1.34777 * 119.99928 * 270.00155 * 10 9 7 19 19 O 1.21287 * 120.00124 * 180.02562 * 18 10 9 20 20 C 1.50698 * 120.00377 * 359.97438 * 18 10 9 21 21 C 1.53043 * 113.15070 * 280.37824 * 20 18 10 22 22 S 1.81423 * 89.88965 * 211.84702 * 21 20 18 23 23 C 1.53042 * 113.15284 * 180.02562 * 20 18 10 24 24 H 0.97000 * 120.00213 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.47083 * 59.99449 * 9 7 2 26 26 H 1.08997 * 109.46896 * 299.99329 * 9 7 2 27 27 H 1.08997 * 109.47679 * 150.00067 * 11 10 9 28 28 H 1.09003 * 109.46652 * 30.00027 * 11 10 9 29 29 H 1.07998 * 120.41916 * 359.95342 * 13 12 11 30 30 H 1.08008 * 120.78688 * 180.22921 * 14 13 12 31 31 H 1.08002 * 120.42244 * 179.78279 * 15 14 13 32 32 H 1.07996 * 119.61757 * 180.25243 * 16 15 14 33 33 H 1.09007 * 112.49278 * 50.21665 * 20 18 10 34 34 H 1.08991 * 113.14959 * 327.10689 * 21 20 18 35 35 H 1.09005 * 113.14381 * 96.59563 * 21 20 18 36 36 H 1.08998 * 113.14988 * 263.40555 * 23 20 18 37 37 H 1.08993 * 113.14698 * 32.85252 * 23 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6126 0.0005 11 6 2.6791 -4.1694 1.2692 12 6 3.9223 -3.4369 1.7042 13 6 3.8177 -2.3774 2.5858 14 6 4.9679 -1.7139 2.9838 15 6 6.1848 -2.1362 2.4701 16 6 6.2113 -3.2036 1.5929 17 7 5.0971 -3.8145 1.2398 18 6 2.6409 -4.1248 -1.1667 19 8 3.4287 -5.0470 -1.1667 20 6 2.1509 -3.5525 -2.4718 21 6 0.7608 -4.0570 -2.8659 22 16 1.2166 -3.9339 -4.6176 23 6 2.7469 -4.2505 -3.6965 24 1 -0.4850 0.8400 -0.0004 25 1 0.6246 -2.5570 -0.8896 26 1 0.6241 -2.5567 0.8903 27 1 2.9075 -5.2272 1.1390 28 1 1.9057 -4.0556 2.0289 29 1 2.8525 -2.0727 2.9625 30 1 4.9171 -0.8850 3.6744 31 1 7.1007 -1.6401 2.7555 32 1 7.1554 -3.5413 1.1916 33 1 2.2406 -2.4668 -2.5109 34 1 0.5693 -5.0805 -2.5439 35 1 -0.0394 -3.3733 -2.5824 36 1 3.6107 -3.7289 -4.1088 37 1 2.9385 -5.3111 -3.5342 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601036403.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:56 Heat of formation + Delta-G solvation = 24.751000 kcal Electronic energy + Delta-G solvation = -21581.294706 eV Core-core repulsion = 18450.705895 eV Total energy + Delta-G solvation = -3130.588811 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.99385 -39.13942 -35.49981 -34.99918 -32.80968 -32.00872 -31.24931 -27.74245 -26.47807 -25.92321 -23.60227 -23.10362 -22.58905 -21.28029 -18.39050 -17.10230 -16.59719 -16.43015 -15.93015 -15.80866 -15.34544 -15.20158 -14.78462 -14.36924 -13.76666 -13.43899 -13.06021 -12.76619 -12.70383 -12.61264 -12.34968 -12.23948 -11.73895 -11.52258 -11.40796 -11.31605 -11.00428 -10.78205 -10.51579 -10.35935 -10.19861 -9.85724 -9.45676 -9.07317 -8.99383 -8.66801 -8.51236 -7.82997 -7.53619 -6.24706 -4.31133 1.48288 1.72159 1.99758 2.16032 3.18632 3.23166 3.24883 3.30550 3.77827 4.26458 4.37472 4.68004 4.74665 5.07239 5.11597 5.16725 5.17659 5.24107 5.42336 5.46755 5.57049 5.59073 5.77810 5.83655 5.91474 5.92352 6.13697 6.18170 6.35468 6.51850 6.58584 6.63694 7.07092 7.10683 7.42540 7.70147 7.98287 8.20886 8.47672 8.72470 8.92522 9.37004 10.81880 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.011574 B = 0.007519 C = 0.005268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2418.561116 B = 3722.999288 C = 5313.535877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.069 3.931 3 Si 0.890 3.110 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.533 4.533 8 H 0.059 0.941 9 C 0.234 3.766 10 N -0.588 5.588 11 C 0.171 3.829 12 C 0.123 3.877 13 C -0.132 4.132 14 C -0.084 4.084 15 C -0.181 4.181 16 C 0.087 3.913 17 N -0.461 5.461 18 C 0.531 3.469 19 O -0.547 6.547 20 C -0.107 4.107 21 C -0.061 4.061 22 S -0.307 6.307 23 C -0.057 4.057 24 H 0.266 0.734 25 H 0.043 0.957 26 H 0.037 0.963 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.136 0.864 30 H 0.127 0.873 31 H 0.125 0.875 32 H 0.147 0.853 33 H 0.142 0.858 34 H 0.102 0.898 35 H 0.109 0.891 36 H 0.095 0.905 37 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.830 -4.820 2.883 7.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.134 4.134 3 Si 0.717 3.283 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.202 1.202 7 C -0.572 4.572 8 H 0.077 0.923 9 C 0.114 3.886 10 N -0.319 5.319 11 C 0.046 3.954 12 C -0.016 4.016 13 C -0.152 4.152 14 C -0.110 4.110 15 C -0.201 4.201 16 C -0.071 4.071 17 N -0.170 5.170 18 C 0.316 3.684 19 O -0.425 6.425 20 C -0.129 4.129 21 C -0.209 4.209 22 S -0.080 6.080 23 C -0.205 4.205 24 H 0.076 0.924 25 H 0.061 0.939 26 H 0.055 0.945 27 H 0.107 0.893 28 H 0.106 0.894 29 H 0.154 0.846 30 H 0.145 0.855 31 H 0.143 0.857 32 H 0.164 0.836 33 H 0.160 0.840 34 H 0.121 0.879 35 H 0.128 0.872 36 H 0.114 0.886 37 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 4.524 -5.667 0.936 7.311 hybrid contribution 0.855 2.016 1.632 2.731 sum 5.378 -3.651 2.569 6.990 Atomic orbital electron populations 1.69890 1.05881 1.27422 1.49543 1.24869 0.94747 0.99013 0.94760 0.86677 0.79687 0.83025 0.78888 1.20120 1.21145 1.20185 1.21387 0.93414 0.90283 1.52078 0.92326 1.19566 0.87375 0.82681 0.98931 1.48155 1.44882 1.35279 1.03561 1.20120 0.91166 0.97436 0.86640 1.21628 0.93626 0.93998 0.92345 1.21990 0.99510 0.95603 0.98097 1.21504 0.92563 0.98494 0.98472 1.22036 0.98589 0.99260 1.00222 1.22641 0.96695 0.92929 0.94808 1.67567 0.98159 1.29481 1.21785 1.20010 0.80844 0.82515 0.85045 1.90651 1.34763 1.29704 1.87405 1.22696 0.93705 1.03970 0.92543 1.24213 1.00787 1.05248 0.90685 1.88759 1.11495 1.94487 1.13271 1.24177 0.97603 1.05103 0.93655 0.92443 0.93897 0.94515 0.89278 0.89382 0.84572 0.85459 0.85657 0.83595 0.84020 0.87933 0.87207 0.88627 0.86950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.09 13.29 55.43 0.74 -22.36 16 2 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.89 19.97 29.54 -169.99 -5.02 14.95 16 4 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.29 -6.42 7.11 56.52 0.40 -6.01 16 6 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 7 C -0.53 -12.78 8.96 -34.44 -0.31 -13.09 16 8 H 0.06 1.49 7.81 -52.49 -0.41 1.08 16 9 C 0.23 5.01 4.92 -5.19 -0.03 4.99 16 10 N -0.59 -11.42 2.44 -176.43 -0.43 -11.85 16 11 C 0.17 3.01 5.76 -5.19 -0.03 2.98 16 12 C 0.12 2.24 6.36 -82.58 -0.53 1.72 16 13 C -0.13 -2.22 9.57 -39.44 -0.38 -2.59 16 14 C -0.08 -1.27 10.18 -39.28 -0.40 -1.66 16 15 C -0.18 -2.56 10.11 -39.44 -0.40 -2.96 16 16 C 0.09 1.37 11.18 -17.55 -0.20 1.17 16 17 N -0.46 -8.65 10.27 -9.47 -0.10 -8.74 16 18 C 0.53 10.38 7.17 -10.99 -0.08 10.30 16 19 O -0.55 -11.66 15.52 5.55 0.09 -11.58 16 20 C -0.11 -1.88 2.54 -91.73 -0.23 -2.11 16 21 C -0.06 -0.96 6.83 37.18 0.25 -0.71 16 22 S -0.31 -4.99 24.79 -107.50 -2.67 -7.65 16 23 C -0.06 -0.90 7.18 37.18 0.27 -0.63 16 24 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 25 H 0.04 0.94 5.33 -51.93 -0.28 0.66 16 26 H 0.04 0.82 7.89 -51.93 -0.41 0.41 16 27 H 0.09 1.57 7.42 -51.93 -0.39 1.19 16 28 H 0.09 1.34 7.79 -51.93 -0.40 0.94 16 29 H 0.14 2.21 8.06 -52.49 -0.42 1.79 16 30 H 0.13 1.60 8.06 -52.48 -0.42 1.18 16 31 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 32 H 0.15 1.90 8.06 -52.49 -0.42 1.47 16 33 H 0.14 2.75 7.64 -51.92 -0.40 2.36 16 34 H 0.10 1.50 8.11 -51.93 -0.42 1.08 16 35 H 0.11 1.78 7.17 -51.93 -0.37 1.41 16 36 H 0.10 1.44 8.14 -51.93 -0.42 1.01 16 37 H 0.11 1.77 7.57 -51.93 -0.39 1.37 16 LS Contribution 328.82 15.07 4.96 4.96 Total: -1.00 -28.31 328.82 -9.31 -37.62 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -4.72 Total: 5.63 kcal Atomic # 6 Polarization: 1.18 SS G_CDS: -2.15 Total: -0.97 kcal Atomic # 7 Polarization: -43.16 SS G_CDS: 0.21 Total: -42.95 kcal Atomic # 8 Polarization: -11.66 SS G_CDS: 0.09 Total: -11.58 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.95 kcal Atomic # 16 Polarization: -4.99 SS G_CDS: -2.67 Total: -7.65 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -28.31 -9.31 -37.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601036403.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.372 kcal (2) G-P(sol) polarization free energy of solvation -28.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds