Wall clock time and date at job start Tue Mar 31 2020 06:35:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.34895 * 126.33462 * 2 1 4 4 C 1.34535 * 107.68091 * 180.29864 * 3 2 1 5 5 C 1.47028 * 125.76103 * 179.75929 * 4 3 2 6 6 C 1.36174 * 125.33544 * 359.97361 * 5 4 3 7 7 C 1.37726 * 114.44349 * 179.97438 * 6 5 4 8 8 C 1.33713 * 115.19353 * 359.97438 * 7 6 5 9 9 S 1.75828 * 109.95903 * 359.77141 * 8 7 6 10 10 N 1.31519 * 108.48100 * 359.73836 * 4 3 2 11 11 C 1.34221 * 108.60967 * 359.97438 * 10 4 3 12 12 C 1.50701 * 126.05062 * 180.02562 * 11 10 4 13 13 N 1.46901 * 109.46921 * 90.02545 * 12 11 10 14 14 C 1.46906 * 110.99793 * 179.97438 * 13 12 11 15 15 H 1.09003 * 109.47279 * 325.00167 * 14 13 12 16 16 C 1.52995 * 109.46946 * 85.00144 * 14 13 12 17 17 C 1.50701 * 109.46893 * 205.00308 * 14 13 12 18 18 H 1.07996 * 120.00253 * 0.02562 * 17 14 13 19 19 C 1.37878 * 119.99674 * 180.02562 * 17 14 13 20 20 N 1.31513 * 120.00353 * 359.97438 * 19 17 14 21 21 Si 1.86796 * 119.99967 * 179.97438 * 19 17 14 22 22 H 1.48500 * 109.47012 * 59.99851 * 21 19 17 23 23 H 1.48503 * 109.47338 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47354 * 300.00101 * 21 19 17 25 25 H 1.09003 * 109.47297 * 270.14330 * 1 2 3 26 26 H 1.08998 * 109.47645 * 30.14091 * 1 2 3 27 27 H 1.08999 * 109.47329 * 150.14506 * 1 2 3 28 28 H 1.07996 * 122.77626 * 359.97438 * 6 5 4 29 29 H 1.08004 * 122.40291 * 180.02562 * 7 6 5 30 30 H 1.07996 * 125.01834 * 179.97438 * 8 7 6 31 31 H 1.09002 * 109.47060 * 210.02726 * 12 11 10 32 32 H 1.09001 * 109.47380 * 330.02814 * 12 11 10 33 33 H 1.00898 * 110.99877 * 56.04636 * 13 12 11 34 34 H 1.09001 * 109.47056 * 179.97438 * 16 14 13 35 35 H 1.09000 * 109.47395 * 299.99746 * 16 14 13 36 36 H 1.09003 * 109.47112 * 59.99921 * 16 14 13 37 37 H 0.97002 * 120.00598 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3062 1.0867 0.0000 4 6 3.5809 0.6564 -0.0067 5 6 4.7766 1.5120 -0.0141 6 6 4.7706 2.8737 -0.0158 7 6 6.0219 3.4491 -0.0225 8 6 7.0445 2.5876 -0.0258 9 16 6.4388 0.9370 -0.0137 10 7 3.5770 -0.6588 -0.0050 11 6 2.3037 -1.0833 0.0033 12 6 1.8477 -2.5197 0.0084 13 7 1.7072 -2.9838 1.3950 14 6 1.2625 -4.3833 1.4392 15 1 0.5792 -4.5737 0.6115 16 6 2.4758 -5.3079 1.3219 17 6 0.5559 -4.6448 2.7443 18 1 0.4476 -3.8508 3.4683 19 6 0.0477 -5.8978 3.0140 20 7 0.1791 -6.8646 2.1322 21 14 -0.8276 -6.2222 4.6320 22 1 -2.0055 -5.3251 4.7462 23 1 -1.2773 -7.6369 4.6767 24 1 0.1035 -5.9625 5.7593 25 1 -0.3634 0.0026 1.0277 26 1 -0.3634 0.8887 -0.5160 27 1 -0.3634 -0.8913 -0.5116 28 1 3.8601 3.4544 -0.0121 29 1 6.1668 4.5193 -0.0242 30 1 8.0883 2.8647 -0.0315 31 1 0.8867 -2.5976 -0.5000 32 1 2.5832 -3.1362 -0.5084 33 1 1.0790 -2.3886 1.9137 34 1 2.1459 -6.3462 1.3551 35 1 2.9869 -5.1187 0.3779 36 1 3.1591 -5.1174 2.1495 37 1 -0.1781 -7.7462 2.3221 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602862027.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:31 Heat of formation + Delta-G solvation = 55.288547 kcal Electronic energy + Delta-G solvation = -20106.034117 eV Core-core repulsion = 16976.769513 eV Total energy + Delta-G solvation = -3129.264604 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.12982 -37.89207 -36.32120 -34.56695 -33.21770 -32.00619 -30.18832 -28.94810 -26.64067 -25.38150 -24.67077 -23.73185 -21.87929 -20.95333 -19.79405 -19.03062 -18.09602 -16.71221 -16.67510 -16.04743 -15.51933 -14.89753 -14.45244 -14.08388 -13.62764 -13.48569 -13.42862 -13.31158 -12.93035 -12.90492 -12.52244 -12.39589 -12.14124 -11.73492 -11.25670 -11.06491 -10.98814 -10.87118 -10.75012 -10.34122 -10.29685 -10.10850 -10.01192 -9.53634 -8.84396 -8.72927 -8.48025 -8.01075 -7.28859 -6.03103 -4.09837 0.26475 1.14710 1.68606 1.75394 2.39849 2.78974 3.03247 3.30716 3.35399 3.38423 3.88710 4.39978 4.77650 4.85040 4.94535 5.08193 5.18726 5.27803 5.28101 5.43340 5.53196 5.59368 5.68387 5.87437 5.99695 6.00665 6.09971 6.15891 6.27989 6.47386 6.90153 7.16931 7.23864 7.49687 7.76845 7.83063 7.89188 8.27398 8.36866 8.63822 8.99815 9.56018 11.03125 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.024841 B = 0.003206 C = 0.003046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.899211 B = 8732.714043 C = 9189.998961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.043 4.043 3 O -0.194 6.194 4 C 0.237 3.763 5 C -0.121 4.121 6 C -0.108 4.108 7 C -0.137 4.137 8 C -0.224 4.224 9 S 0.215 5.785 10 N -0.443 5.443 11 C 0.018 3.982 12 C 0.138 3.862 13 N -0.679 5.679 14 C 0.214 3.786 15 H 0.003 0.997 16 C -0.125 4.125 17 C -0.520 4.520 18 H 0.059 0.941 19 C 0.063 3.937 20 N -0.889 5.889 21 Si 0.897 3.103 22 H -0.278 1.278 23 H -0.287 1.287 24 H -0.276 1.276 25 H 0.088 0.912 26 H 0.076 0.924 27 H 0.095 0.905 28 H 0.146 0.854 29 H 0.145 0.855 30 H 0.170 0.830 31 H 0.039 0.961 32 H 0.083 0.917 33 H 0.330 0.670 34 H 0.081 0.919 35 H 0.005 0.995 36 H 0.032 0.968 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.898 19.413 -6.818 22.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.097 4.097 3 O -0.082 6.082 4 C 0.033 3.967 5 C -0.240 4.240 6 C -0.142 4.142 7 C -0.167 4.167 8 C -0.362 4.362 9 S 0.481 5.519 10 N -0.173 5.173 11 C -0.104 4.104 12 C 0.008 3.992 13 N -0.311 5.311 14 C 0.107 3.893 15 H 0.020 0.980 16 C -0.183 4.183 17 C -0.558 4.558 18 H 0.077 0.923 19 C -0.139 4.139 20 N -0.528 5.528 21 Si 0.725 3.275 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.202 1.202 25 H 0.106 0.894 26 H 0.094 0.906 27 H 0.113 0.887 28 H 0.164 0.836 29 H 0.162 0.838 30 H 0.187 0.813 31 H 0.057 0.943 32 H 0.101 0.899 33 H 0.147 0.853 34 H 0.099 0.901 35 H 0.024 0.976 36 H 0.051 0.949 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 9.755 17.244 -6.779 20.940 hybrid contribution -2.610 1.735 0.664 3.203 sum 7.146 18.979 -6.115 21.182 Atomic orbital electron populations 1.20322 0.83621 1.04214 1.04213 1.23376 0.94817 0.83792 1.07754 1.84431 1.16890 1.36201 1.70685 1.22180 0.81986 0.88373 1.04165 1.21460 0.93487 0.94646 1.14423 1.20623 0.99550 0.91985 1.02088 1.19938 0.91049 1.01262 1.04422 1.26080 1.03715 0.96772 1.09600 1.84620 0.93642 1.04849 1.68824 1.70737 1.23175 1.07210 1.16183 1.21681 0.87362 0.97550 1.03842 1.20231 0.98812 0.86587 0.93578 1.60732 1.55663 1.06009 1.08725 1.19125 0.92121 0.81860 0.96243 0.97987 1.21717 0.97344 1.02695 0.96576 1.21206 1.35594 0.96534 1.02477 0.92278 1.24906 0.96034 0.96033 0.96927 1.69886 1.45761 1.02455 1.34700 0.86578 0.79876 0.77102 0.83936 1.20337 1.21284 1.20184 0.89374 0.90552 0.88663 0.83643 0.83756 0.81254 0.94271 0.89909 0.85335 0.90054 0.97567 0.94909 0.92829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.77 10.21 36.00 0.37 -0.40 16 2 C -0.04 -0.67 7.38 -35.64 -0.26 -0.93 16 3 O -0.19 -3.07 10.79 3.42 0.04 -3.03 16 4 C 0.24 3.89 8.09 -14.12 -0.11 3.77 16 5 C -0.12 -1.63 6.46 -36.76 -0.24 -1.87 16 6 C -0.11 -1.16 10.15 -40.51 -0.41 -1.57 16 7 C -0.14 -1.16 10.15 -41.36 -0.42 -1.58 16 8 C -0.22 -1.87 11.21 29.15 0.33 -1.54 16 9 S 0.21 2.44 23.30 -107.50 -2.50 -0.06 16 10 N -0.44 -8.28 11.33 -8.12 -0.09 -8.37 16 11 C 0.02 0.33 6.61 -82.88 -0.55 -0.22 16 12 C 0.14 2.64 5.81 -4.97 -0.03 2.61 16 13 N -0.68 -15.06 6.29 -109.21 -0.69 -15.74 16 14 C 0.21 5.44 2.60 -68.86 -0.18 5.27 16 15 H 0.00 0.07 7.80 -51.93 -0.40 -0.34 16 16 C -0.12 -3.20 9.19 37.16 0.34 -2.85 16 17 C -0.52 -14.26 8.59 -34.44 -0.30 -14.56 16 18 H 0.06 1.60 7.62 -52.49 -0.40 1.20 16 19 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 20 N -0.89 -25.35 11.32 55.43 0.63 -24.72 16 21 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 25 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 27 H 0.09 1.05 7.14 -51.93 -0.37 0.68 16 28 H 0.15 1.36 8.06 -52.49 -0.42 0.93 16 29 H 0.14 0.83 8.06 -52.48 -0.42 0.41 16 30 H 0.17 0.92 8.06 -52.49 -0.42 0.49 16 31 H 0.04 0.69 7.05 -51.93 -0.37 0.33 16 32 H 0.08 1.67 7.44 -51.93 -0.39 1.28 16 33 H 0.33 7.05 8.21 -39.29 -0.32 6.73 16 34 H 0.08 2.23 6.07 -51.93 -0.32 1.91 16 35 H 0.01 0.13 7.45 -51.93 -0.39 -0.26 16 36 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 331.34 15.07 4.99 4.99 Total: -1.00 -31.27 331.34 -8.83 -40.09 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -4.62 Total: 2.86 kcal Atomic # 6 Polarization: -10.68 SS G_CDS: -1.56 Total: -12.23 kcal Atomic # 7 Polarization: -48.68 SS G_CDS: -0.15 Total: -48.84 kcal Atomic # 8 Polarization: -3.07 SS G_CDS: 0.04 Total: -3.03 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: 2.44 SS G_CDS: -2.50 Total: -0.06 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.27 -8.83 -40.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602862027.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.383 kcal (2) G-P(sol) polarization free energy of solvation -31.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds