Wall clock time and date at job start Tue Mar 31 2020 06:35:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.34895 * 126.33462 * 2 1 4 4 C 1.34535 * 107.68091 * 180.29864 * 3 2 1 5 5 C 1.47028 * 125.76103 * 179.75929 * 4 3 2 6 6 C 1.36174 * 125.33544 * 359.97361 * 5 4 3 7 7 C 1.37726 * 114.44349 * 179.97438 * 6 5 4 8 8 C 1.33713 * 115.19353 * 359.97438 * 7 6 5 9 9 S 1.75828 * 109.95903 * 359.77141 * 8 7 6 10 10 N 1.31519 * 108.48100 * 359.73836 * 4 3 2 11 11 C 1.34221 * 108.60967 * 359.97438 * 10 4 3 12 12 C 1.50701 * 126.05062 * 180.02562 * 11 10 4 13 13 N 1.46901 * 109.46921 * 90.02545 * 12 11 10 14 14 C 1.46906 * 110.99793 * 179.97438 * 13 12 11 15 15 H 1.09003 * 109.47279 * 325.00167 * 14 13 12 16 16 C 1.52995 * 109.46946 * 85.00144 * 14 13 12 17 17 C 1.50701 * 109.46893 * 205.00308 * 14 13 12 18 18 H 1.07996 * 120.00253 * 0.02562 * 17 14 13 19 19 C 1.37878 * 119.99674 * 180.02562 * 17 14 13 20 20 N 1.31513 * 120.00353 * 359.97438 * 19 17 14 21 21 Si 1.86796 * 119.99967 * 179.97438 * 19 17 14 22 22 H 1.48500 * 109.47012 * 59.99851 * 21 19 17 23 23 H 1.48503 * 109.47338 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47354 * 300.00101 * 21 19 17 25 25 H 1.09003 * 109.47297 * 270.14330 * 1 2 3 26 26 H 1.08998 * 109.47645 * 30.14091 * 1 2 3 27 27 H 1.08999 * 109.47329 * 150.14506 * 1 2 3 28 28 H 1.07996 * 122.77626 * 359.97438 * 6 5 4 29 29 H 1.08004 * 122.40291 * 180.02562 * 7 6 5 30 30 H 1.07996 * 125.01834 * 179.97438 * 8 7 6 31 31 H 1.09002 * 109.47060 * 210.02726 * 12 11 10 32 32 H 1.09001 * 109.47380 * 330.02814 * 12 11 10 33 33 H 1.00898 * 110.99877 * 56.04636 * 13 12 11 34 34 H 1.09001 * 109.47056 * 179.97438 * 16 14 13 35 35 H 1.09000 * 109.47395 * 299.99746 * 16 14 13 36 36 H 1.09003 * 109.47112 * 59.99921 * 16 14 13 37 37 H 0.97002 * 120.00598 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3062 1.0867 0.0000 4 6 3.5809 0.6564 -0.0067 5 6 4.7766 1.5120 -0.0141 6 6 4.7706 2.8737 -0.0158 7 6 6.0219 3.4491 -0.0225 8 6 7.0445 2.5876 -0.0258 9 16 6.4388 0.9370 -0.0137 10 7 3.5770 -0.6588 -0.0050 11 6 2.3037 -1.0833 0.0033 12 6 1.8477 -2.5197 0.0084 13 7 1.7072 -2.9838 1.3950 14 6 1.2625 -4.3833 1.4392 15 1 0.5792 -4.5737 0.6115 16 6 2.4758 -5.3079 1.3219 17 6 0.5559 -4.6448 2.7443 18 1 0.4476 -3.8508 3.4683 19 6 0.0477 -5.8978 3.0140 20 7 0.1791 -6.8646 2.1322 21 14 -0.8276 -6.2222 4.6320 22 1 -2.0055 -5.3251 4.7462 23 1 -1.2773 -7.6369 4.6767 24 1 0.1035 -5.9625 5.7593 25 1 -0.3634 0.0026 1.0277 26 1 -0.3634 0.8887 -0.5160 27 1 -0.3634 -0.8913 -0.5116 28 1 3.8601 3.4544 -0.0121 29 1 6.1668 4.5193 -0.0242 30 1 8.0883 2.8647 -0.0315 31 1 0.8867 -2.5976 -0.5000 32 1 2.5832 -3.1362 -0.5084 33 1 1.0790 -2.3886 1.9137 34 1 2.1459 -6.3462 1.3551 35 1 2.9869 -5.1187 0.3779 36 1 3.1591 -5.1174 2.1495 37 1 -0.1781 -7.7462 2.3221 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602862027.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:31 Heat of formation + Delta-G solvation = 33.372367 kcal Electronic energy + Delta-G solvation = -20106.984473 eV Core-core repulsion = 16976.769513 eV Total energy + Delta-G solvation = -3130.214961 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -44.35266 -38.68436 -38.04706 -36.03759 -34.71589 -33.61291 -31.06207 -30.73942 -27.97717 -27.28216 -26.06494 -24.82081 -23.08143 -22.14437 -21.73119 -20.00929 -19.03681 -18.55316 -17.91935 -17.35167 -16.82372 -16.43540 -15.92473 -15.47486 -15.29138 -14.82190 -14.63980 -14.31243 -14.08109 -13.78430 -13.66945 -13.55163 -13.35008 -13.19841 -13.07550 -12.75285 -12.71400 -12.37089 -12.26824 -12.20086 -11.95038 -11.77481 -11.53510 -10.94330 -10.58856 -10.52335 -9.56679 -9.15829 -9.03407 -8.13324 -6.27830 -0.63522 0.27892 0.59424 0.99861 1.42511 1.44790 1.45550 1.53063 1.68507 1.93990 2.42086 2.78038 3.15326 3.57799 3.70107 3.91108 4.10131 4.16220 4.25790 4.49522 4.52665 4.56989 4.64500 4.69819 4.83590 4.89971 5.00232 5.05728 5.06583 5.17206 5.18728 5.27110 5.40902 5.43318 5.65196 5.81912 6.19375 6.42777 6.59146 6.72009 6.95838 7.42356 8.92361 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.024841 B = 0.003206 C = 0.003046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.899211 B = 8732.714043 C = 9189.998961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.032 4.032 3 O -0.194 6.194 4 C 0.242 3.758 5 C -0.171 4.171 6 C -0.085 4.085 7 C -0.142 4.142 8 C -0.191 4.191 9 S 0.170 5.830 10 N -0.485 5.485 11 C -0.016 4.016 12 C 0.147 3.853 13 N -0.683 5.683 14 C 0.220 3.780 15 H -0.019 1.019 16 C -0.114 4.114 17 C -0.539 4.539 18 H 0.059 0.941 19 C 0.016 3.984 20 N -0.917 5.917 21 Si 0.963 3.037 22 H -0.267 1.267 23 H -0.283 1.283 24 H -0.275 1.275 25 H 0.097 0.903 26 H 0.103 0.897 27 H 0.099 0.901 28 H 0.159 0.841 29 H 0.182 0.818 30 H 0.206 0.794 31 H 0.054 0.946 32 H 0.065 0.935 33 H 0.334 0.666 34 H 0.061 0.939 35 H 0.018 0.982 36 H 0.022 0.978 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.008 22.199 -6.358 24.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.087 4.087 3 O -0.082 6.082 4 C 0.038 3.962 5 C -0.289 4.289 6 C -0.120 4.120 7 C -0.171 4.171 8 C -0.328 4.328 9 S 0.435 5.565 10 N -0.215 5.215 11 C -0.137 4.137 12 C 0.018 3.982 13 N -0.315 5.315 14 C 0.112 3.888 15 H -0.002 1.002 16 C -0.173 4.173 17 C -0.578 4.578 18 H 0.077 0.923 19 C -0.184 4.184 20 N -0.556 5.556 21 Si 0.789 3.211 22 H -0.192 1.192 23 H -0.209 1.209 24 H -0.200 1.200 25 H 0.115 0.885 26 H 0.122 0.878 27 H 0.117 0.883 28 H 0.176 0.824 29 H 0.200 0.800 30 H 0.223 0.777 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.151 0.849 34 H 0.080 0.920 35 H 0.037 0.963 36 H 0.041 0.959 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 9.860 20.033 -6.328 23.208 hybrid contribution -2.512 1.036 0.466 2.757 sum 7.348 21.069 -5.862 23.071 Atomic orbital electron populations 1.20521 0.80803 1.05759 1.05206 1.23931 0.96161 0.82969 1.05610 1.84448 1.16868 1.36132 1.70791 1.22724 0.82862 0.88182 1.02440 1.21598 0.92924 0.95534 1.18872 1.21014 1.01250 0.90948 0.98807 1.20307 0.89786 1.03071 1.03940 1.26528 1.05447 0.94273 1.06526 1.84757 0.93694 1.08168 1.69860 1.70664 1.23767 1.08729 1.18324 1.21491 0.88037 0.97331 1.06826 1.20053 0.99034 0.87442 0.91695 1.60598 1.55402 1.04546 1.10921 1.18910 0.91316 0.83698 0.94891 1.00185 1.21567 0.97314 1.01626 0.96776 1.21509 1.36149 0.96901 1.03197 0.92293 1.25715 0.96654 0.95750 1.00266 1.70009 1.46365 1.02779 1.36422 0.85534 0.78892 0.77142 0.79580 1.19196 1.20859 1.20017 0.88475 0.87824 0.88267 0.82361 0.80047 0.77711 0.92767 0.91658 0.84878 0.91995 0.96325 0.95891 0.92720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.42 10.21 71.24 0.73 -0.69 16 2 C -0.03 -0.99 7.38 24.82 0.18 -0.81 16 3 O -0.19 -6.04 10.79 -10.66 -0.12 -6.16 16 4 C 0.24 8.05 8.09 87.05 0.70 8.75 16 5 C -0.17 -4.51 6.46 24.10 0.16 -4.36 16 6 C -0.08 -1.62 10.15 21.67 0.22 -1.40 16 7 C -0.14 -1.86 10.15 21.12 0.21 -1.65 16 8 C -0.19 -2.55 11.21 66.79 0.75 -1.80 16 9 S 0.17 3.80 23.30 -56.49 -1.32 2.48 16 10 N -0.49 -18.77 11.33 -293.47 -3.33 -22.09 16 11 C -0.02 -0.58 6.61 41.33 0.27 -0.30 16 12 C 0.15 5.81 5.81 85.56 0.50 6.31 16 13 N -0.68 -30.97 6.29 -499.44 -3.14 -34.12 16 14 C 0.22 11.49 2.60 44.17 0.11 11.61 16 15 H -0.02 -1.08 7.80 -2.39 -0.02 -1.10 16 16 C -0.11 -6.03 9.19 71.98 0.66 -5.37 16 17 C -0.54 -29.93 8.59 25.60 0.22 -29.71 16 18 H 0.06 3.20 7.62 -2.91 -0.02 3.18 16 19 C 0.02 0.87 5.30 84.66 0.45 1.32 16 20 N -0.92 -52.93 11.32 21.45 0.24 -52.69 16 21 Si 0.96 43.46 29.54 68.60 2.03 45.49 16 22 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 23 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 24 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 25 H 0.10 1.94 8.14 -2.39 -0.02 1.93 16 26 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.10 2.05 7.14 -2.39 -0.02 2.04 16 28 H 0.16 2.53 8.06 -2.91 -0.02 2.50 16 29 H 0.18 1.10 8.06 -2.91 -0.02 1.07 16 30 H 0.21 1.24 8.06 -2.91 -0.02 1.22 16 31 H 0.05 1.95 7.05 -2.39 -0.02 1.93 16 32 H 0.06 2.76 7.44 -2.39 -0.02 2.74 16 33 H 0.33 14.50 8.21 -89.70 -0.74 13.76 16 34 H 0.06 3.49 6.07 -2.39 -0.01 3.48 16 35 H 0.02 0.88 7.45 -2.39 -0.02 0.86 16 36 H 0.02 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 Total: -1.00 -69.16 331.34 -0.10 -69.27 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: 0.36 Total: 15.92 kcal Atomic # 6 Polarization: -23.27 SS G_CDS: 5.17 Total: -18.10 kcal Atomic # 7 Polarization: -102.67 SS G_CDS: -6.23 Total: -108.89 kcal Atomic # 8 Polarization: -6.04 SS G_CDS: -0.12 Total: -6.16 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Atomic # 16 Polarization: 3.80 SS G_CDS: -1.32 Total: 2.48 kcal Total: -69.16 -0.10 -69.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602862027.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.638 kcal (2) G-P(sol) polarization free energy of solvation -69.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds