Wall clock time and date at job start Tue Mar 31 2020 06:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34832 * 125.63508 * 2 1 4 4 C 1.40779 * 107.06910 * 179.78276 * 3 2 1 5 5 C 1.36257 * 106.72689 * 0.35650 * 4 3 2 6 6 C 1.47105 * 125.96086 * 179.91090 * 5 4 3 7 7 N 1.30491 * 125.48270 * 179.97438 * 6 5 4 8 8 C 1.31336 * 116.96741 * 180.22265 * 7 6 5 9 9 C 1.50694 * 122.06417 * 179.75027 * 8 7 6 10 10 N 1.46894 * 109.47621 * 274.71816 * 9 8 7 11 11 C 1.46901 * 111.00324 * 179.97438 * 10 9 8 12 12 H 1.09004 * 109.46952 * 325.00258 * 11 10 9 13 13 C 1.53004 * 109.47068 * 85.00066 * 11 10 9 14 14 C 1.50693 * 109.47025 * 205.00027 * 11 10 9 15 15 H 1.07998 * 120.00758 * 354.36202 * 14 11 10 16 16 C 1.37886 * 119.99950 * 174.36533 * 14 11 10 17 17 N 1.31507 * 120.00137 * 156.79842 * 16 14 11 18 18 Si 1.86800 * 119.99637 * 336.79754 * 16 14 11 19 19 H 1.48500 * 109.46772 * 180.02562 * 18 16 14 20 20 H 1.48500 * 109.47479 * 300.00187 * 18 16 14 21 21 H 1.48504 * 109.47142 * 60.00371 * 18 16 14 22 22 C 1.33688 * 115.87264 * 359.48688 * 8 7 6 23 23 S 1.76175 * 125.48356 * 359.68603 * 6 5 4 24 24 O 1.34268 * 125.64315 * 180.02562 * 2 1 3 25 25 H 1.09004 * 109.46438 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46811 * 299.96791 * 1 2 3 27 27 H 1.09001 * 109.47294 * 59.97396 * 1 2 3 28 28 H 1.07991 * 126.46205 * 0.02562 * 3 2 1 29 29 H 1.08005 * 126.63732 * 180.24956 * 4 3 2 30 30 H 1.09009 * 109.47152 * 154.71513 * 9 8 7 31 31 H 1.09003 * 109.46893 * 34.71867 * 9 8 7 32 32 H 1.00899 * 111.00127 * 56.04200 * 10 9 8 33 33 H 1.09002 * 109.46955 * 293.06169 * 13 11 10 34 34 H 1.09002 * 109.47054 * 53.05689 * 13 11 10 35 35 H 1.08990 * 109.47135 * 173.06070 * 13 11 10 36 36 H 0.97001 * 120.00482 * 354.93632 * 17 16 14 37 37 H 1.08006 * 125.86455 * 180.27224 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2926 1.0958 0.0000 4 6 3.6271 0.6476 0.0051 5 6 3.5834 -0.7142 -0.0001 6 6 4.7458 -1.6158 0.0006 7 7 4.6930 -2.9197 -0.0040 8 6 5.8385 -3.5621 0.0021 9 6 5.9116 -5.0673 0.0033 10 7 5.8147 -5.5612 1.3833 11 6 5.8819 -7.0281 1.4234 12 1 5.3862 -7.4387 0.5437 13 6 7.3462 -7.4714 1.4373 14 6 5.1938 -7.5286 2.6672 15 1 4.8312 -6.8266 3.4034 16 6 5.0271 -8.8830 2.8653 17 7 4.8640 -9.3544 4.0821 18 14 5.0329 -10.0481 1.4052 19 1 4.8359 -11.4405 1.8823 20 1 3.9332 -9.6833 0.4763 21 1 6.3338 -9.9466 0.6961 22 6 6.9357 -2.7983 0.0016 23 16 6.4331 -1.1091 0.0005 24 8 2.2894 -1.0911 -0.0005 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3633 0.5133 0.8903 27 1 -0.3634 0.5142 -0.8897 28 1 1.9606 2.1235 0.0004 29 1 4.5140 1.2640 0.0102 30 1 6.8596 -5.3854 -0.4308 31 1 5.0884 -5.4715 -0.5859 32 1 4.9741 -5.2257 1.8293 33 1 7.8117 -7.2173 0.4850 34 1 7.8720 -6.9633 2.2457 35 1 7.3981 -8.5492 1.5910 36 1 4.9341 -8.7605 4.8458 37 1 7.9551 -3.1552 0.0018 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602865052.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:53 Heat of formation + Delta-G solvation = 58.452939 kcal Electronic energy + Delta-G solvation = -19896.246685 eV Core-core repulsion = 16767.119299 eV Total energy + Delta-G solvation = -3129.127385 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.76964 -39.68348 -35.99378 -33.47355 -33.14740 -32.35458 -30.82967 -28.99476 -27.44616 -25.64286 -24.51944 -23.27074 -22.11856 -20.66138 -19.64230 -19.34120 -18.21503 -17.44129 -16.79168 -16.50422 -15.39170 -14.86030 -14.74378 -14.19988 -13.76412 -13.62743 -13.48497 -13.23662 -13.21482 -13.18347 -13.09257 -12.50064 -12.17158 -11.94271 -11.78293 -11.56096 -11.12417 -10.74880 -10.41722 -10.27721 -10.02306 -9.84268 -9.78018 -9.70190 -9.21540 -8.94259 -8.20910 -8.04913 -7.53096 -6.47089 -4.05579 0.18676 0.95331 1.56756 1.63424 2.27448 2.77761 3.00281 3.40462 3.44631 3.62094 3.79512 4.47846 4.50804 4.67957 4.83757 5.06838 5.14799 5.17480 5.21556 5.33295 5.36620 5.37845 5.48409 5.59001 5.74848 5.85561 6.06201 6.17884 6.21041 6.44059 6.68889 6.78767 6.85495 6.91476 7.46912 7.69405 7.73960 8.11621 8.40061 8.46884 8.96064 9.60250 10.90529 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.018494 B = 0.003553 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.612975 B = 7879.438740 C = 8942.570615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.006 3.994 3 C -0.213 4.213 4 C -0.169 4.169 5 C 0.056 3.944 6 C 0.122 3.878 7 N -0.441 5.441 8 C 0.084 3.916 9 C 0.126 3.874 10 N -0.675 5.675 11 C 0.191 3.809 12 H -0.005 1.005 13 C -0.133 4.133 14 C -0.612 4.612 15 H 0.061 0.939 16 C 0.039 3.961 17 N -0.897 5.897 18 Si 1.038 2.962 19 H -0.284 1.284 20 H -0.285 1.285 21 H -0.277 1.277 22 C -0.224 4.224 23 S 0.114 5.886 24 O -0.148 6.148 25 H 0.079 0.921 26 H 0.089 0.911 27 H 0.088 0.912 28 H 0.155 0.845 29 H 0.154 0.846 30 H 0.083 0.917 31 H 0.042 0.958 32 H 0.342 0.658 33 H 0.017 0.983 34 H 0.049 0.951 35 H 0.049 0.951 36 H 0.270 0.730 37 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.862 22.052 -11.334 24.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.047 4.047 3 C -0.232 4.232 4 C -0.192 4.192 5 C 0.002 3.998 6 C -0.152 4.152 7 N -0.156 5.156 8 C -0.049 4.049 9 C -0.006 4.006 10 N -0.307 5.307 11 C 0.082 3.918 12 H 0.012 0.988 13 C -0.191 4.191 14 C -0.649 4.649 15 H 0.079 0.921 16 C -0.167 4.167 17 N -0.530 5.530 18 Si 0.866 3.134 19 H -0.210 1.210 20 H -0.211 1.211 21 H -0.203 1.203 22 C -0.363 4.363 23 S 0.368 5.632 24 O -0.043 6.043 25 H 0.098 0.902 26 H 0.107 0.893 27 H 0.107 0.893 28 H 0.173 0.827 29 H 0.172 0.828 30 H 0.101 0.899 31 H 0.060 0.940 32 H 0.160 0.840 33 H 0.036 0.964 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.080 0.920 37 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -1.417 20.881 -11.619 23.938 hybrid contribution -0.426 0.688 0.198 0.833 sum -1.844 21.569 -11.421 24.476 Atomic orbital electron populations 1.20390 0.84638 1.04598 1.03747 1.22753 0.94322 0.83961 1.03655 1.21435 0.92005 0.99659 1.10104 1.21760 0.98883 0.92198 1.06366 1.18883 0.80680 0.90773 1.09484 1.24153 0.93453 0.91168 1.06457 1.66608 1.29851 1.05082 1.14052 1.20291 0.85684 0.98730 1.00170 1.20581 1.01458 0.85046 0.93542 1.60697 1.44844 1.12633 1.12478 1.19423 0.93123 0.82670 0.96586 0.98756 1.22063 0.98426 1.00330 0.98295 1.22019 1.42776 0.94203 1.05928 0.92113 1.25668 0.93142 0.96843 1.01092 1.70832 1.45127 1.38371 0.98653 0.84127 0.77233 0.76397 0.75684 1.21013 1.21122 1.20266 1.26913 1.04563 0.93499 1.11362 1.84615 1.00191 1.08277 1.70068 1.84174 1.15243 1.34516 1.70384 0.90151 0.89274 0.89339 0.82738 0.82791 0.89877 0.93981 0.84008 0.96369 0.93140 0.93177 0.92018 0.79780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.52 10.41 36.01 0.37 -0.15 16 2 C 0.01 0.07 7.31 -35.52 -0.26 -0.19 16 3 C -0.21 -2.05 10.78 -39.83 -0.43 -2.48 16 4 C -0.17 -1.85 10.64 -39.33 -0.42 -2.27 16 5 C 0.06 0.78 7.24 -36.70 -0.27 0.52 16 6 C 0.12 1.86 7.50 -14.53 -0.11 1.75 16 7 N -0.44 -7.86 10.57 -7.73 -0.08 -7.94 16 8 C 0.08 1.41 6.20 -84.40 -0.52 0.88 16 9 C 0.13 2.31 5.89 -4.98 -0.03 2.28 16 10 N -0.67 -14.80 6.29 -109.22 -0.69 -15.48 16 11 C 0.19 4.67 2.20 -68.87 -0.15 4.52 16 12 H -0.01 -0.12 6.37 -51.93 -0.33 -0.45 16 13 C -0.13 -3.02 9.09 37.16 0.34 -2.68 16 14 C -0.61 -17.55 8.77 -34.44 -0.30 -17.85 16 15 H 0.06 1.89 7.92 -52.49 -0.42 1.47 16 16 C 0.04 1.14 5.19 -17.82 -0.09 1.05 16 17 N -0.90 -27.73 13.69 55.43 0.76 -26.97 16 18 Si 1.04 25.44 26.45 -169.99 -4.50 20.94 16 19 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.28 -6.28 6.16 56.52 0.35 -5.94 16 22 C -0.22 -3.07 11.06 29.14 0.32 -2.75 16 23 S 0.11 1.35 23.19 -107.50 -2.49 -1.14 16 24 O -0.15 -2.18 10.67 4.51 0.05 -2.13 16 25 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.15 1.01 8.06 -52.49 -0.42 0.58 16 29 H 0.15 1.30 8.06 -52.48 -0.42 0.88 16 30 H 0.08 1.37 7.52 -51.92 -0.39 0.98 16 31 H 0.04 0.80 8.05 -51.93 -0.42 0.38 16 32 H 0.34 7.97 8.25 -39.29 -0.32 7.65 16 33 H 0.02 0.35 7.64 -51.93 -0.40 -0.05 16 34 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.05 1.18 5.48 -51.93 -0.28 0.89 16 36 H 0.27 8.33 8.73 -40.82 -0.36 7.98 16 37 H 0.18 2.09 8.06 -52.48 -0.42 1.67 16 LS Contribution 330.23 15.07 4.98 4.98 Total: -1.00 -32.85 330.23 -8.25 -41.10 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -4.73 Total: 4.03 kcal Atomic # 6 Polarization: -15.83 SS G_CDS: -1.55 Total: -17.37 kcal Atomic # 7 Polarization: -50.39 SS G_CDS: -0.01 Total: -50.40 kcal Atomic # 8 Polarization: -2.18 SS G_CDS: 0.05 Total: -2.13 kcal Atomic # 14 Polarization: 25.44 SS G_CDS: -4.50 Total: 20.94 kcal Atomic # 16 Polarization: 1.35 SS G_CDS: -2.49 Total: -1.14 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.85 -8.25 -41.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602865052.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.553 kcal (2) G-P(sol) polarization free energy of solvation -32.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds