Wall clock time and date at job start Tue Mar 31 2020 06:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34832 * 125.63508 * 2 1 4 4 C 1.40779 * 107.06910 * 179.78276 * 3 2 1 5 5 C 1.36257 * 106.72689 * 0.35650 * 4 3 2 6 6 C 1.47105 * 125.96086 * 179.91090 * 5 4 3 7 7 N 1.30491 * 125.48270 * 179.97438 * 6 5 4 8 8 C 1.31336 * 116.96741 * 180.22265 * 7 6 5 9 9 C 1.50694 * 122.06417 * 179.75027 * 8 7 6 10 10 N 1.46894 * 109.47621 * 274.71816 * 9 8 7 11 11 C 1.46901 * 111.00324 * 179.97438 * 10 9 8 12 12 H 1.09004 * 109.46952 * 325.00258 * 11 10 9 13 13 C 1.53004 * 109.47068 * 85.00066 * 11 10 9 14 14 C 1.50693 * 109.47025 * 205.00027 * 11 10 9 15 15 H 1.07998 * 120.00758 * 354.36202 * 14 11 10 16 16 C 1.37886 * 119.99950 * 174.36533 * 14 11 10 17 17 N 1.31507 * 120.00137 * 156.79842 * 16 14 11 18 18 Si 1.86800 * 119.99637 * 336.79754 * 16 14 11 19 19 H 1.48500 * 109.46772 * 180.02562 * 18 16 14 20 20 H 1.48500 * 109.47479 * 300.00187 * 18 16 14 21 21 H 1.48504 * 109.47142 * 60.00371 * 18 16 14 22 22 C 1.33688 * 115.87264 * 359.48688 * 8 7 6 23 23 S 1.76175 * 125.48356 * 359.68603 * 6 5 4 24 24 O 1.34268 * 125.64315 * 180.02562 * 2 1 3 25 25 H 1.09004 * 109.46438 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46811 * 299.96791 * 1 2 3 27 27 H 1.09001 * 109.47294 * 59.97396 * 1 2 3 28 28 H 1.07991 * 126.46205 * 0.02562 * 3 2 1 29 29 H 1.08005 * 126.63732 * 180.24956 * 4 3 2 30 30 H 1.09009 * 109.47152 * 154.71513 * 9 8 7 31 31 H 1.09003 * 109.46893 * 34.71867 * 9 8 7 32 32 H 1.00899 * 111.00127 * 56.04200 * 10 9 8 33 33 H 1.09002 * 109.46955 * 293.06169 * 13 11 10 34 34 H 1.09002 * 109.47054 * 53.05689 * 13 11 10 35 35 H 1.08990 * 109.47135 * 173.06070 * 13 11 10 36 36 H 0.97001 * 120.00482 * 354.93632 * 17 16 14 37 37 H 1.08006 * 125.86455 * 180.27224 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2926 1.0958 0.0000 4 6 3.6271 0.6476 0.0051 5 6 3.5834 -0.7142 -0.0001 6 6 4.7458 -1.6158 0.0006 7 7 4.6930 -2.9197 -0.0040 8 6 5.8385 -3.5621 0.0021 9 6 5.9116 -5.0673 0.0033 10 7 5.8147 -5.5612 1.3833 11 6 5.8819 -7.0281 1.4234 12 1 5.3862 -7.4387 0.5437 13 6 7.3462 -7.4714 1.4373 14 6 5.1938 -7.5286 2.6672 15 1 4.8312 -6.8266 3.4034 16 6 5.0271 -8.8830 2.8653 17 7 4.8640 -9.3544 4.0821 18 14 5.0329 -10.0481 1.4052 19 1 4.8359 -11.4405 1.8823 20 1 3.9332 -9.6833 0.4763 21 1 6.3338 -9.9466 0.6961 22 6 6.9357 -2.7983 0.0016 23 16 6.4331 -1.1091 0.0005 24 8 2.2894 -1.0911 -0.0005 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3633 0.5133 0.8903 27 1 -0.3634 0.5142 -0.8897 28 1 1.9606 2.1235 0.0004 29 1 4.5140 1.2640 0.0102 30 1 6.8596 -5.3854 -0.4308 31 1 5.0884 -5.4715 -0.5859 32 1 4.9741 -5.2257 1.8293 33 1 7.8117 -7.2173 0.4850 34 1 7.8720 -6.9633 2.2457 35 1 7.3981 -8.5492 1.5910 36 1 4.9341 -8.7605 4.8458 37 1 7.9551 -3.1552 0.0018 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602865052.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:53 Heat of formation + Delta-G solvation = 34.942382 kcal Electronic energy + Delta-G solvation = -19897.266179 eV Core-core repulsion = 16767.119299 eV Total energy + Delta-G solvation = -3130.146880 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.64317 -40.83816 -37.77265 -34.84406 -34.31611 -33.65493 -32.14004 -30.48466 -28.33096 -27.24717 -26.30853 -24.43901 -22.98926 -21.65301 -21.53981 -20.44804 -19.72253 -19.07084 -17.84333 -17.43248 -16.75394 -16.42853 -15.96495 -15.54571 -15.34773 -15.08487 -14.62711 -14.32260 -14.04010 -13.95486 -13.93134 -13.90483 -13.74425 -13.41076 -13.02570 -12.99241 -12.81297 -12.34478 -12.23982 -11.92881 -11.66332 -11.19545 -11.08945 -10.91362 -10.68747 -10.44789 -10.22433 -9.30614 -8.95407 -8.78970 -6.39276 -0.82004 -0.03789 0.51341 0.68812 1.42064 1.44142 1.50565 1.70820 1.89865 1.96496 2.46310 2.82136 2.97081 3.54617 3.71678 3.91712 3.92351 4.05549 4.25610 4.47051 4.48111 4.56270 4.63928 4.70901 4.70953 4.74246 4.83519 4.85673 4.93066 5.03057 5.08870 5.11523 5.50082 5.57973 5.73818 5.99813 6.01300 6.18727 6.54134 6.63045 6.68455 7.35897 8.55948 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.018494 B = 0.003553 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.612975 B = 7879.438740 C = 8942.570615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.003 4.003 3 C -0.212 4.212 4 C -0.150 4.150 5 C 0.006 3.994 6 C 0.100 3.900 7 N -0.492 5.492 8 C 0.055 3.945 9 C 0.130 3.870 10 N -0.676 5.676 11 C 0.191 3.809 12 H -0.003 1.003 13 C -0.127 4.127 14 C -0.619 4.619 15 H 0.018 0.982 16 C -0.010 4.010 17 N -0.927 5.927 18 Si 1.080 2.920 19 H -0.284 1.284 20 H -0.272 1.272 21 H -0.241 1.241 22 C -0.224 4.224 23 S 0.200 5.800 24 O -0.186 6.186 25 H 0.070 0.930 26 H 0.110 0.890 27 H 0.113 0.887 28 H 0.191 0.809 29 H 0.180 0.820 30 H 0.106 0.894 31 H 0.028 0.972 32 H 0.327 0.673 33 H 0.056 0.944 34 H 0.041 0.959 35 H 0.041 0.959 36 H 0.254 0.746 37 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.764 24.284 -13.517 27.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.056 4.056 3 C -0.230 4.230 4 C -0.173 4.173 5 C -0.046 4.046 6 C -0.173 4.173 7 N -0.208 5.208 8 C -0.078 4.078 9 C -0.001 4.001 10 N -0.306 5.306 11 C 0.082 3.918 12 H 0.015 0.985 13 C -0.185 4.185 14 C -0.657 4.657 15 H 0.036 0.964 16 C -0.210 4.210 17 N -0.562 5.562 18 Si 0.900 3.100 19 H -0.210 1.210 20 H -0.198 1.198 21 H -0.165 1.165 22 C -0.364 4.364 23 S 0.455 5.545 24 O -0.083 6.083 25 H 0.089 0.911 26 H 0.128 0.872 27 H 0.132 0.868 28 H 0.208 0.792 29 H 0.197 0.803 30 H 0.124 0.876 31 H 0.046 0.954 32 H 0.143 0.857 33 H 0.075 0.925 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -0.295 23.157 -13.810 26.964 hybrid contribution -0.851 0.249 0.922 1.280 sum -1.146 23.406 -12.888 26.744 Atomic orbital electron populations 1.20612 0.82183 1.04679 1.05903 1.23666 0.95894 0.83616 1.02407 1.21882 0.91100 1.00934 1.09127 1.22184 1.00526 0.91045 1.03554 1.19219 0.80497 0.91893 1.13020 1.24587 0.95866 0.90924 1.05962 1.66545 1.31157 1.06808 1.16283 1.20059 0.86640 0.98006 1.03056 1.20575 1.01959 0.86663 0.90930 1.60676 1.43870 1.10981 1.15094 1.19335 0.93927 0.84322 0.94216 0.98522 1.21932 0.96859 0.99584 1.00096 1.22236 1.42921 0.93851 1.06699 0.96381 1.27140 0.92093 0.99030 1.02699 1.70959 1.47817 1.38231 0.99163 0.83609 0.79380 0.74143 0.72846 1.21017 1.19797 1.16533 1.27273 1.04957 0.94948 1.09244 1.84192 0.96586 1.05677 1.68010 1.84145 1.16127 1.36671 1.71405 0.91138 0.87202 0.86848 0.79210 0.80253 0.87583 0.95396 0.85689 0.92525 0.94008 0.93971 0.93716 0.77307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.93 10.41 71.24 0.74 -0.19 16 2 C 0.00 -0.07 7.31 24.90 0.18 0.11 16 3 C -0.21 -3.55 10.78 22.11 0.24 -3.31 16 4 C -0.15 -3.00 10.64 22.43 0.24 -2.76 16 5 C 0.01 0.18 7.24 24.14 0.17 0.36 16 6 C 0.10 3.03 7.50 87.22 0.65 3.69 16 7 N -0.49 -18.05 10.57 -178.36 -1.89 -19.93 16 8 C 0.05 1.83 6.20 41.60 0.26 2.09 16 9 C 0.13 4.74 5.89 85.56 0.50 5.24 16 10 N -0.68 -30.06 6.29 -499.47 -3.14 -33.20 16 11 C 0.19 9.35 2.20 44.17 0.10 9.45 16 12 H 0.00 -0.13 6.37 -2.38 -0.02 -0.15 16 13 C -0.13 -5.52 9.09 71.98 0.65 -4.87 16 14 C -0.62 -36.73 8.77 25.60 0.22 -36.50 16 15 H 0.02 1.19 7.92 -2.91 -0.02 1.16 16 16 C -0.01 -0.58 5.19 84.66 0.44 -0.14 16 17 N -0.93 -59.24 13.69 21.45 0.29 -58.94 16 18 Si 1.08 50.79 26.45 68.60 1.81 52.61 16 19 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 20 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 21 H -0.24 -9.98 6.16 99.48 0.61 -9.37 16 22 C -0.22 -5.74 11.06 66.79 0.74 -5.00 16 23 S 0.20 4.29 23.19 -56.49 -1.31 2.98 16 24 O -0.19 -5.66 10.67 -6.79 -0.07 -5.73 16 25 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.19 1.70 8.06 -2.92 -0.02 1.67 16 29 H 0.18 2.45 8.06 -2.91 -0.02 2.42 16 30 H 0.11 3.28 7.52 -2.38 -0.02 3.26 16 31 H 0.03 1.08 8.05 -2.39 -0.02 1.06 16 32 H 0.33 16.03 8.25 -89.69 -0.74 15.29 16 33 H 0.06 2.02 7.64 -2.39 -0.02 2.00 16 34 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.04 1.88 5.48 -2.39 -0.01 1.87 16 36 H 0.25 16.53 8.73 -92.71 -0.81 15.72 16 37 H 0.21 4.08 8.06 -2.91 -0.02 4.05 16 Total: -1.00 -75.85 330.23 1.07 -74.79 By element: Atomic # 1 Polarization: 19.05 SS G_CDS: 0.22 Total: 19.27 kcal Atomic # 6 Polarization: -36.99 SS G_CDS: 5.15 Total: -31.84 kcal Atomic # 7 Polarization: -107.34 SS G_CDS: -4.73 Total: -112.08 kcal Atomic # 8 Polarization: -5.66 SS G_CDS: -0.07 Total: -5.73 kcal Atomic # 14 Polarization: 50.79 SS G_CDS: 1.81 Total: 52.61 kcal Atomic # 16 Polarization: 4.29 SS G_CDS: -1.31 Total: 2.98 kcal Total: -75.85 1.07 -74.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602865052.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.727 kcal (2) G-P(sol) polarization free energy of solvation -75.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds