Wall clock time and date at job start Tue Mar 31 2020 06:11:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86804 * 119.99494 * 2 1 4 4 H 1.48503 * 109.46910 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47207 * 299.99994 * 3 2 1 6 6 H 1.48499 * 109.47373 * 60.00484 * 3 2 1 7 7 C 1.37870 * 120.00296 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00167 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00220 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47390 * 180.02562 * 9 7 2 11 11 N 1.46506 * 109.47226 * 180.02562 * 10 9 7 12 12 C 1.33787 * 124.17858 * 90.02424 * 11 10 9 13 13 O 1.21543 * 123.77176 * 359.96079 * 12 11 10 14 14 N 1.34526 * 112.45950 * 179.69372 * 12 11 10 15 15 C 1.47319 * 106.61635 * 0.26762 * 14 12 11 16 16 H 1.08999 * 110.59745 * 241.47039 * 15 14 12 17 17 C 1.50703 * 110.59932 * 118.52680 * 15 14 12 18 18 C 1.38216 * 120.01060 * 341.45184 * 17 15 14 19 19 C 1.38221 * 120.02410 * 179.97438 * 18 17 15 20 20 C 1.38264 * 120.05315 * 0.02562 * 19 18 17 21 21 C 1.38185 * 120.02380 * 0.02562 * 20 19 18 22 22 C 1.38435 * 120.01013 * 161.17584 * 17 15 14 23 23 F 1.35093 * 120.02689 * 359.97438 * 22 17 15 24 24 C 1.34769 * 124.17557 * 270.19903 * 11 10 9 25 25 O 1.21234 * 127.15764 * 0.05903 * 24 11 10 26 26 H 0.96994 * 119.99969 * 359.97438 * 1 2 3 27 27 H 1.08994 * 109.47048 * 60.00115 * 9 7 2 28 28 H 1.09008 * 109.47311 * 300.00546 * 9 7 2 29 29 H 1.09001 * 109.47281 * 60.00237 * 10 9 7 30 30 H 1.08999 * 109.47355 * 299.99842 * 10 9 7 31 31 H 0.96998 * 126.69370 * 180.28395 * 14 12 11 32 32 H 1.08007 * 119.99335 * 359.95764 * 18 17 15 33 33 H 1.08007 * 119.97579 * 180.02562 * 19 18 17 34 34 H 1.07995 * 119.99162 * 179.97438 * 20 19 18 35 35 H 1.08001 * 120.01302 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.7091 1.3466 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 6 2.2455 -3.6619 -0.0005 11 7 1.5130 -4.9307 -0.0012 12 6 1.1381 -5.5816 -1.1083 13 8 1.3664 -5.1860 -2.2346 14 7 0.4851 -6.7257 -0.8356 15 6 0.4198 -6.8339 0.6322 16 1 0.9411 -7.7279 0.9743 17 6 -1.0128 -6.8422 1.1000 18 6 -2.0145 -6.3796 0.2675 19 6 -3.3286 -6.3876 0.6961 20 6 -3.6426 -6.8576 1.9579 21 6 -2.6426 -7.3195 2.7923 22 6 -1.3265 -7.3184 2.3614 23 9 -0.3489 -7.7763 3.1735 24 6 1.1308 -5.5848 1.1135 25 8 1.3201 -5.2466 2.2622 26 1 -0.4850 0.8400 0.0004 27 1 0.6243 -2.5567 -0.8903 28 1 0.6248 -2.5571 0.8897 29 1 2.8721 -3.6042 0.8895 30 1 2.8721 -3.6042 -0.8905 31 1 0.1273 -7.3565 -1.4797 32 1 -1.7705 -6.0116 -0.7181 33 1 -4.1108 -6.0263 0.0448 34 1 -4.6695 -6.8630 2.2919 35 1 -2.8880 -7.6863 3.7780 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603823203.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:46 Heat of formation + Delta-G solvation = -61.119989 kcal Electronic energy + Delta-G solvation = -23161.797728 eV Core-core repulsion = 19461.272095 eV Total energy + Delta-G solvation = -3700.525633 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.02760 -42.23476 -39.12292 -38.24620 -35.97851 -35.17111 -33.01739 -31.53873 -30.75220 -29.91740 -27.14297 -25.26190 -23.24441 -22.77080 -22.16344 -21.44891 -19.83148 -18.05429 -17.76471 -17.01543 -16.75231 -16.37161 -16.16313 -15.68143 -15.40139 -15.10205 -14.78856 -14.47608 -14.41030 -13.88465 -13.78535 -13.63196 -13.21897 -12.96385 -12.50404 -12.39593 -11.97741 -11.56878 -11.36609 -10.98607 -10.91952 -10.62187 -10.22242 -10.11532 -9.95879 -9.60414 -9.26935 -9.14855 -8.92160 -8.83360 -8.39812 -6.04421 -4.08128 0.82541 0.99622 1.85014 2.52556 3.15159 3.31482 3.33316 3.37809 3.39472 3.43373 4.03650 4.10455 4.24794 4.44520 4.56034 4.65521 4.90641 5.04885 5.18438 5.32408 5.37782 5.58612 5.82972 5.84701 5.99568 6.03011 6.11848 6.19184 6.29306 6.63484 6.63865 6.82443 7.31027 7.56625 7.65214 7.69754 7.92366 8.26260 8.38831 8.97096 9.56073 11.07345 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.017802 B = 0.004582 C = 0.004289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.517087 B = 6109.845596 C = 6526.349105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.898 3.102 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.521 4.521 8 H 0.060 0.940 9 C 0.012 3.988 10 C 0.119 3.881 11 N -0.566 5.566 12 C 0.702 3.298 13 O -0.534 6.534 14 N -0.728 5.728 15 C 0.138 3.862 16 H 0.133 0.867 17 C -0.135 4.135 18 C -0.068 4.068 19 C -0.128 4.128 20 C -0.082 4.082 21 C -0.155 4.155 22 C 0.125 3.875 23 F -0.130 7.130 24 C 0.527 3.473 25 O -0.455 6.455 26 H 0.261 0.739 27 H 0.024 0.976 28 H 0.021 0.979 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.437 0.563 32 H 0.137 0.863 33 H 0.134 0.866 34 H 0.135 0.865 35 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.413 -18.878 2.433 20.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.142 4.142 3 Si 0.725 3.275 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.560 4.560 8 H 0.079 0.921 9 C -0.026 4.026 10 C 0.000 4.000 11 N -0.311 5.311 12 C 0.403 3.597 13 O -0.406 6.406 14 N -0.394 5.394 15 C 0.028 3.972 16 H 0.151 0.849 17 C -0.138 4.138 18 C -0.086 4.086 19 C -0.146 4.146 20 C -0.100 4.100 21 C -0.174 4.174 22 C 0.105 3.895 23 F -0.108 7.108 24 C 0.312 3.688 25 O -0.324 6.324 26 H 0.071 0.929 27 H 0.042 0.958 28 H 0.039 0.961 29 H 0.102 0.898 30 H 0.105 0.895 31 H 0.282 0.718 32 H 0.154 0.846 33 H 0.152 0.848 34 H 0.153 0.847 35 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -6.182 -18.241 2.495 19.421 hybrid contribution 0.297 0.593 -0.073 0.667 sum -5.885 -17.649 2.422 18.761 Atomic orbital electron populations 1.69982 1.06150 1.26702 1.50225 1.24993 0.94874 0.99399 0.94944 0.86448 0.80094 0.83357 0.77590 1.19565 1.20925 1.20942 1.21029 0.93142 0.90258 1.51540 0.92145 1.19414 0.94272 0.90803 0.98076 1.22249 0.95626 0.78949 1.03141 1.46713 1.52933 1.24638 1.06832 1.15922 0.78609 0.80377 0.84775 1.91017 1.59415 1.69692 1.20512 1.45511 1.62367 1.25139 1.06370 1.20685 0.94077 1.00194 0.82208 0.84943 1.19547 0.94427 1.05109 0.94681 1.20972 0.91925 0.95843 0.99866 1.21236 0.96461 1.00189 0.96678 1.21107 0.99316 0.96205 0.93419 1.21142 0.90914 1.03757 1.01601 1.17398 0.85767 0.98304 0.88065 1.91531 1.61416 1.86076 1.71796 1.20474 0.78308 0.84548 0.85474 1.90806 1.53476 1.70178 1.17904 0.92918 0.95766 0.96056 0.89772 0.89521 0.71833 0.84560 0.84824 0.84741 0.84329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.09 13.29 55.43 0.74 -26.36 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.90 21.82 29.54 -169.99 -5.02 16.80 16 4 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.52 -14.85 9.11 -34.44 -0.31 -15.17 16 8 H 0.06 1.64 7.74 -52.48 -0.41 1.24 16 9 C 0.01 0.32 5.30 -27.89 -0.15 0.17 16 10 C 0.12 2.57 5.64 -4.04 -0.02 2.55 16 11 N -0.57 -10.67 2.60 -120.73 -0.31 -10.99 16 12 C 0.70 12.18 8.62 -88.02 -0.76 11.42 16 13 O -0.53 -11.05 17.48 5.33 0.09 -10.96 16 14 N -0.73 -8.81 4.90 -60.32 -0.30 -9.11 16 15 C 0.14 1.75 3.64 -69.35 -0.25 1.50 16 16 H 0.13 1.33 7.95 -51.93 -0.41 0.92 16 17 C -0.14 -1.68 5.16 -104.56 -0.54 -2.22 16 18 C -0.07 -0.79 9.36 -39.60 -0.37 -1.16 16 19 C -0.13 -1.26 10.04 -39.58 -0.40 -1.65 16 20 C -0.08 -0.74 10.04 -39.59 -0.40 -1.13 16 21 C -0.16 -1.56 10.03 -39.51 -0.40 -1.96 16 22 C 0.12 1.52 7.25 -39.42 -0.29 1.23 16 23 F -0.13 -1.69 16.66 2.25 0.04 -1.66 16 24 C 0.53 9.23 7.63 -10.56 -0.08 9.15 16 25 O -0.46 -9.26 17.76 5.60 0.10 -9.16 16 26 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 27 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.02 0.61 8.14 -51.92 -0.42 0.19 16 29 H 0.08 1.76 8.01 -51.93 -0.42 1.34 16 30 H 0.09 1.83 7.86 -51.93 -0.41 1.43 16 31 H 0.44 3.82 8.96 -40.82 -0.37 3.45 16 32 H 0.14 1.58 7.16 -52.48 -0.38 1.20 16 33 H 0.13 1.04 8.06 -52.48 -0.42 0.62 16 34 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 35 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 LS Contribution 317.29 15.07 4.78 4.78 Total: -1.00 -34.70 317.29 -7.58 -42.28 By element: Atomic # 1 Polarization: 3.63 SS G_CDS: -3.63 Total: 0.00 kcal Atomic # 6 Polarization: 8.43 SS G_CDS: -4.06 Total: 4.37 kcal Atomic # 7 Polarization: -46.58 SS G_CDS: 0.13 Total: -46.45 kcal Atomic # 8 Polarization: -20.31 SS G_CDS: 0.19 Total: -20.12 kcal Atomic # 9 Polarization: -1.69 SS G_CDS: 0.04 Total: -1.66 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -34.70 -7.58 -42.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603823203.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.840 kcal (2) G-P(sol) polarization free energy of solvation -34.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds