Wall clock time and date at job start Tue Mar 31 2020 06:11:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86799 * 120.00313 * 2 1 4 4 H 1.48501 * 109.46939 * 239.99899 * 3 2 1 5 5 H 1.48497 * 109.47179 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47195 * 120.00066 * 3 2 1 7 7 C 1.37884 * 119.99911 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00069 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99505 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.46812 * 179.97438 * 9 7 2 11 11 N 1.46502 * 109.47407 * 180.02562 * 10 9 7 12 12 C 1.33785 * 124.17705 * 269.96516 * 11 10 9 13 13 O 1.21540 * 123.77286 * 0.02562 * 12 11 10 14 14 N 1.34863 * 112.50333 * 180.11884 * 12 11 10 15 15 C 1.47310 * 106.43609 * 359.86308 * 14 12 11 16 16 H 1.09007 * 110.60008 * 118.72887 * 15 14 12 17 17 C 1.50708 * 110.59974 * 241.52018 * 15 14 12 18 18 C 1.38214 * 120.00753 * 21.46953 * 17 15 14 19 19 C 1.38224 * 120.02197 * 180.02562 * 18 17 15 20 20 C 1.38265 * 120.05408 * 359.97438 * 19 18 17 21 21 C 1.38183 * 120.02323 * 359.97438 * 20 19 18 22 22 C 1.38437 * 120.01160 * 201.74479 * 17 15 14 23 23 F 1.35099 * 120.02745 * 0.02562 * 22 17 15 24 24 C 1.34764 * 124.17702 * 89.99460 * 11 10 9 25 25 O 1.21236 * 127.16207 * 359.94008 * 24 11 10 26 26 H 0.97007 * 119.99984 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.46732 * 60.00004 * 9 7 2 28 28 H 1.08993 * 109.47275 * 299.99978 * 9 7 2 29 29 H 1.09003 * 109.47324 * 59.99813 * 10 9 7 30 30 H 1.09010 * 109.47275 * 300.00185 * 10 9 7 31 31 H 0.96999 * 126.87547 * 179.97438 * 14 12 11 32 32 H 1.08000 * 119.99561 * 359.97438 * 18 17 15 33 33 H 1.08004 * 119.97833 * 180.02562 * 19 18 17 34 34 H 1.07999 * 119.98941 * 180.02562 * 20 19 18 35 35 H 1.08002 * 120.01017 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2508 -2.4992 0.0005 10 6 2.2450 -3.6621 0.0005 11 7 1.5125 -4.9309 -0.0001 12 6 1.1369 -5.5824 1.1064 13 8 1.3649 -5.1877 2.2331 14 7 0.4788 -6.7273 0.8330 15 6 0.4161 -6.8316 -0.6351 16 1 0.9322 -7.7283 -0.9783 17 6 -1.0156 -6.8329 -1.1059 18 6 -2.0093 -6.3128 -0.2983 19 6 -3.3225 -6.3143 -0.7296 20 6 -3.6436 -6.8355 -1.9694 21 6 -2.6516 -7.3551 -2.7789 22 6 -1.3365 -7.3602 -2.3451 23 9 -0.3667 -7.8744 -3.1327 24 6 1.1343 -5.5861 -1.1153 25 8 1.3276 -5.2493 -2.2638 26 1 -0.4850 0.8401 0.0004 27 1 0.6245 -2.5570 -0.8897 28 1 0.6239 -2.5567 0.8902 29 1 2.8717 -3.6044 0.8905 30 1 2.8717 -3.6044 -0.8895 31 1 0.1161 -7.3578 1.4748 32 1 -1.7599 -5.9058 0.6705 33 1 -4.0984 -5.9073 -0.0981 34 1 -4.6699 -6.8358 -2.3055 35 1 -2.9025 -7.7617 -3.7475 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603823214.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:48 Heat of formation + Delta-G solvation = -61.631702 kcal Electronic energy + Delta-G solvation = -23155.245668 eV Core-core repulsion = 19454.697846 eV Total energy + Delta-G solvation = -3700.547822 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.04082 -42.21659 -39.12035 -38.24327 -35.97438 -35.16846 -33.01628 -31.53136 -30.74878 -29.91845 -27.13008 -25.26117 -23.24478 -22.76764 -22.16958 -21.44298 -19.82953 -18.05004 -17.76995 -17.01769 -16.75751 -16.36949 -16.14476 -15.69438 -15.40084 -15.10791 -14.79356 -14.48094 -14.41122 -13.87683 -13.78287 -13.62262 -13.22561 -12.96581 -12.50945 -12.39000 -11.97036 -11.56768 -11.36924 -10.95779 -10.92794 -10.65937 -10.21527 -10.11626 -9.95380 -9.59834 -9.29688 -9.14974 -8.92375 -8.83697 -8.39067 -6.04140 -4.07996 0.82361 0.99684 1.84527 2.52374 3.15392 3.32835 3.34127 3.37419 3.38396 3.41497 4.03732 4.10332 4.26003 4.44587 4.55404 4.65600 4.90890 5.05008 5.18679 5.32487 5.37400 5.58841 5.83104 5.84580 5.99119 6.03268 6.11608 6.19473 6.29045 6.63407 6.63704 6.83381 7.30646 7.56193 7.64985 7.69631 7.92228 8.26222 8.38560 8.96709 9.56010 11.07526 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.017876 B = 0.004578 C = 0.004278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.000034 B = 6115.132957 C = 6543.740496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.898 3.102 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.523 4.523 8 H 0.059 0.941 9 C 0.013 3.987 10 C 0.119 3.881 11 N -0.566 5.566 12 C 0.702 3.298 13 O -0.533 6.533 14 N -0.729 5.729 15 C 0.138 3.862 16 H 0.133 0.867 17 C -0.135 4.135 18 C -0.067 4.067 19 C -0.127 4.127 20 C -0.082 4.082 21 C -0.155 4.155 22 C 0.124 3.876 23 F -0.131 7.131 24 C 0.527 3.473 25 O -0.456 6.456 26 H 0.262 0.738 27 H 0.021 0.979 28 H 0.024 0.976 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.438 0.562 32 H 0.136 0.864 33 H 0.134 0.866 34 H 0.135 0.865 35 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.459 -18.738 -2.454 19.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.141 4.141 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.561 4.561 8 H 0.077 0.923 9 C -0.025 4.025 10 C 0.000 4.000 11 N -0.311 5.311 12 C 0.403 3.597 13 O -0.405 6.405 14 N -0.395 5.395 15 C 0.028 3.972 16 H 0.150 0.850 17 C -0.137 4.137 18 C -0.085 4.085 19 C -0.145 4.145 20 C -0.100 4.100 21 C -0.174 4.174 22 C 0.104 3.896 23 F -0.109 7.109 24 C 0.312 3.688 25 O -0.324 6.324 26 H 0.072 0.928 27 H 0.039 0.961 28 H 0.042 0.958 29 H 0.105 0.895 30 H 0.102 0.898 31 H 0.282 0.718 32 H 0.154 0.846 33 H 0.152 0.848 34 H 0.153 0.847 35 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -6.237 -18.101 -2.513 19.309 hybrid contribution 0.323 0.571 0.074 0.660 sum -5.913 -17.530 -2.439 18.660 Atomic orbital electron populations 1.69960 1.06154 1.26929 1.50015 1.24988 0.94874 0.99371 0.94914 0.86562 0.79518 0.82658 0.78722 1.20100 1.21234 1.20066 1.20954 0.93067 0.90278 1.51842 0.92253 1.19403 0.94257 0.90755 0.98067 1.22257 0.95639 0.78938 1.03147 1.46703 1.53006 1.24533 1.06824 1.16007 0.78602 0.80337 0.84761 1.91014 1.59411 1.69633 1.20488 1.45584 1.62192 1.25407 1.06298 1.20677 0.94026 1.00229 0.82283 0.84995 1.19548 0.94477 1.04555 0.95164 1.20975 0.92005 0.95748 0.99800 1.21241 0.96447 1.00070 0.96771 1.21109 0.99346 0.95992 0.93590 1.21137 0.90988 1.03620 1.01675 1.17399 0.85918 0.97539 0.88717 1.91527 1.62008 1.84187 1.73176 1.20471 0.78325 0.84502 0.85458 1.90806 1.53513 1.70148 1.17943 0.92801 0.96060 0.95771 0.89515 0.89770 0.71797 0.84578 0.84809 0.84734 0.84334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.06 13.29 55.43 0.74 -26.32 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.90 21.79 29.54 -169.99 -5.02 16.77 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.52 -14.89 9.11 -34.44 -0.31 -15.20 16 8 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 9 C 0.01 0.34 5.30 -27.88 -0.15 0.20 16 10 C 0.12 2.57 5.64 -4.04 -0.02 2.54 16 11 N -0.57 -10.65 2.60 -120.63 -0.31 -10.96 16 12 C 0.70 12.17 8.63 -87.72 -0.76 11.41 16 13 O -0.53 -11.03 17.48 5.33 0.09 -10.94 16 14 N -0.73 -8.84 4.99 -60.23 -0.30 -9.14 16 15 C 0.14 1.75 3.66 -69.35 -0.25 1.50 16 16 H 0.13 1.34 7.86 -51.92 -0.41 0.93 16 17 C -0.14 -1.68 5.15 -104.55 -0.54 -2.22 16 18 C -0.07 -0.79 9.35 -39.60 -0.37 -1.16 16 19 C -0.13 -1.27 10.04 -39.58 -0.40 -1.66 16 20 C -0.08 -0.74 10.04 -39.59 -0.40 -1.13 16 21 C -0.16 -1.55 10.03 -39.51 -0.40 -1.95 16 22 C 0.12 1.51 7.25 -39.42 -0.29 1.22 16 23 F -0.13 -1.68 16.61 2.25 0.04 -1.65 16 24 C 0.53 9.24 7.63 -10.56 -0.08 9.16 16 25 O -0.46 -9.27 17.76 5.60 0.10 -9.17 16 26 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 27 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.09 1.83 7.86 -51.93 -0.41 1.42 16 30 H 0.08 1.76 8.00 -51.92 -0.42 1.34 16 31 H 0.44 3.84 8.96 -40.82 -0.37 3.48 16 32 H 0.14 1.62 7.23 -52.49 -0.38 1.24 16 33 H 0.13 1.06 8.06 -52.48 -0.42 0.64 16 34 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 35 H 0.14 1.08 8.06 -52.49 -0.42 0.65 16 LS Contribution 317.30 15.07 4.78 4.78 Total: -1.00 -34.54 317.30 -7.58 -42.12 By element: Atomic # 1 Polarization: 3.79 SS G_CDS: -3.63 Total: 0.16 kcal Atomic # 6 Polarization: 8.41 SS G_CDS: -4.06 Total: 4.36 kcal Atomic # 7 Polarization: -46.55 SS G_CDS: 0.12 Total: -46.43 kcal Atomic # 8 Polarization: -20.30 SS G_CDS: 0.19 Total: -20.11 kcal Atomic # 9 Polarization: -1.68 SS G_CDS: 0.04 Total: -1.65 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -34.54 -7.58 -42.12 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603823214.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.514 kcal (2) G-P(sol) polarization free energy of solvation -34.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds