Wall clock time and date at job start Tue Mar 31 2020 06:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.32820 * 124.72444 * 2 1 4 4 C 1.44145 * 114.11986 * 179.80851 * 3 2 1 5 5 C 1.47384 * 123.23783 * 180.18493 * 4 3 2 6 6 N 1.29266 * 119.42403 * 180.31434 * 5 4 3 7 7 N 1.39740 * 121.56899 * 181.27267 * 6 5 4 8 8 C 1.46500 * 119.73890 * 195.17872 * 7 6 5 9 9 C 1.50697 * 109.47031 * 270.00178 * 8 7 6 10 10 H 1.08002 * 120.00665 * 359.97438 * 9 8 7 11 11 C 1.37878 * 119.99844 * 179.97438 * 9 8 7 12 12 N 1.31512 * 120.00056 * 0.02562 * 11 9 8 13 13 Si 1.86807 * 120.00092 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.46915 * 60.00455 * 13 11 9 15 15 H 1.48500 * 109.46970 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.47060 * 300.00061 * 13 11 9 17 17 C 1.34665 * 120.53216 * 15.20229 * 7 6 5 18 18 O 1.21334 * 120.18877 * 184.18299 * 17 7 6 19 19 C 1.50862 * 119.62661 * 4.20978 * 17 7 6 20 20 C 1.50581 * 119.42677 * 0.04686 * 5 4 3 21 21 C 1.34942 * 113.52494 * 0.47918 * 4 3 2 22 22 C 1.50694 * 125.00806 * 179.72871 * 21 4 3 23 23 S 1.75618 * 124.72482 * 180.30165 * 2 1 3 24 24 H 1.09002 * 109.47152 * 179.72270 * 1 2 3 25 25 H 1.09001 * 109.46980 * 59.72371 * 1 2 3 26 26 H 1.09004 * 109.47113 * 299.72352 * 1 2 3 27 27 H 1.08009 * 122.94012 * 359.97438 * 3 2 1 28 28 H 1.09001 * 109.46518 * 29.99605 * 8 7 6 29 29 H 1.09002 * 109.47293 * 149.99804 * 8 7 6 30 30 H 0.97010 * 120.00146 * 179.97438 * 12 11 9 31 31 H 1.09006 * 109.52864 * 84.34861 * 19 17 7 32 32 H 1.08999 * 109.53124 * 204.48477 * 19 17 7 33 33 H 1.08990 * 109.43253 * 266.71665 * 20 5 4 34 34 H 1.09001 * 109.42774 * 26.58110 * 20 5 4 35 35 H 1.08995 * 109.47679 * 179.97438 * 22 21 4 36 36 H 1.09000 * 109.47049 * 299.99941 * 22 21 4 37 37 H 1.09008 * 109.47148 * 59.99354 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2636 1.0916 0.0000 4 6 3.6804 0.8264 0.0044 5 6 4.7013 1.8894 0.0092 6 7 5.9533 1.5675 0.0068 7 7 6.9582 2.5381 0.0375 8 6 8.3355 2.1689 -0.2987 9 6 9.0595 1.7384 0.9509 10 1 8.5453 1.7400 1.9007 11 6 10.3783 1.3425 0.8817 12 7 11.0047 1.3410 -0.2747 13 14 11.2761 0.8095 2.4308 14 1 10.5815 -0.3593 3.0280 15 1 12.6717 0.4341 2.0897 16 1 11.2884 1.9294 3.4059 17 6 6.6709 3.8099 0.3742 18 8 7.5321 4.6633 0.3257 19 6 5.2724 4.1676 0.8125 20 6 4.2678 3.3314 0.0106 21 6 3.9822 -0.4888 -0.0026 22 6 5.3785 -1.0555 -0.0061 23 16 2.5074 -1.4434 -0.0076 24 1 -0.3633 -1.0277 -0.0050 25 1 -0.3633 0.5181 -0.8875 26 1 -0.3633 0.5096 0.8925 27 1 1.8531 2.0907 -0.0004 28 1 8.3268 1.3473 -1.0149 29 1 8.8451 3.0273 -0.7365 30 1 11.9327 1.0628 -0.3233 31 1 5.1592 3.9580 1.8763 32 1 5.0926 5.2268 0.6288 33 1 4.2226 3.6975 -1.0150 34 1 3.2818 3.4132 0.4680 35 1 5.3289 -2.1443 -0.0113 36 1 5.9081 -0.7113 -0.8944 37 1 5.9088 -0.7205 0.8855 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603924112.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:23 Heat of formation + Delta-G solvation = 4.446775 kcal Electronic energy + Delta-G solvation = -20846.471053 eV Core-core repulsion = 17715.001785 eV Total energy + Delta-G solvation = -3131.469268 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.45944 -39.38949 -37.59412 -35.81525 -34.30058 -34.04055 -31.90951 -30.42099 -29.37788 -26.63891 -25.85289 -24.70948 -23.80565 -22.41112 -19.92321 -18.83944 -18.60004 -18.05905 -17.55457 -17.32830 -16.75258 -16.31044 -15.66714 -15.36945 -15.13875 -14.55071 -14.39787 -14.22304 -14.07681 -13.86223 -13.66039 -13.61345 -13.49657 -13.22402 -13.05094 -12.73072 -12.59471 -12.54995 -12.38051 -12.30146 -12.24168 -11.73933 -11.66010 -11.31004 -10.70648 -10.38687 -9.91585 -9.33472 -8.87659 -8.28130 -6.44045 -0.14469 0.60738 0.71363 1.04545 1.32574 1.37542 1.43910 1.56157 1.59473 2.19856 2.35477 2.97963 3.07965 3.57108 3.69605 3.82933 4.03424 4.15537 4.29899 4.42169 4.48453 4.67907 4.69386 4.76983 4.80591 4.87931 4.90697 4.95058 5.00752 5.12280 5.23054 5.23754 5.30779 5.38957 5.55282 5.65277 5.67485 5.92930 6.59050 6.85042 7.24082 7.40600 8.79039 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.018567 B = 0.004653 C = 0.003933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.671532 B = 6016.679423 C = 7116.634093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.179 4.179 3 C -0.117 4.117 4 C -0.081 4.081 5 C 0.149 3.851 6 N -0.265 5.265 7 N -0.448 5.448 8 C 0.283 3.717 9 C -0.544 4.544 10 H 0.048 0.952 11 C 0.012 3.988 12 N -0.926 5.926 13 Si 0.972 3.028 14 H -0.264 1.264 15 H -0.272 1.272 16 H -0.274 1.274 17 C 0.466 3.534 18 O -0.580 6.580 19 C -0.130 4.130 20 C -0.103 4.103 21 C -0.153 4.153 22 C -0.070 4.070 23 S 0.117 5.883 24 H 0.072 0.928 25 H 0.092 0.908 26 H 0.092 0.908 27 H 0.179 0.821 28 H 0.022 0.978 29 H 0.014 0.986 30 H 0.270 0.730 31 H 0.112 0.888 32 H 0.133 0.867 33 H 0.104 0.896 34 H 0.145 0.855 35 H 0.074 0.926 36 H 0.064 0.936 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.049 -3.489 0.945 26.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.295 4.295 3 C -0.147 4.147 4 C -0.095 4.095 5 C -0.041 4.041 6 N -0.072 5.072 7 N -0.265 5.265 8 C 0.163 3.837 9 C -0.582 4.582 10 H 0.066 0.934 11 C -0.187 4.187 12 N -0.565 5.565 13 Si 0.795 3.205 14 H -0.188 1.188 15 H -0.197 1.197 16 H -0.200 1.200 17 C 0.256 3.744 18 O -0.458 6.458 19 C -0.170 4.170 20 C -0.142 4.142 21 C -0.274 4.274 22 C -0.128 4.128 23 S 0.381 5.619 24 H 0.091 0.909 25 H 0.110 0.890 26 H 0.111 0.889 27 H 0.196 0.804 28 H 0.040 0.960 29 H 0.032 0.968 30 H 0.079 0.921 31 H 0.130 0.870 32 H 0.151 0.849 33 H 0.122 0.878 34 H 0.163 0.837 35 H 0.093 0.907 36 H 0.083 0.917 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -24.955 -5.222 0.792 25.508 hybrid contribution 1.478 1.874 0.499 2.438 sum -23.477 -3.349 1.290 23.749 Atomic orbital electron populations 1.20464 0.85091 1.03792 1.04496 1.24554 1.01397 0.94685 1.08884 1.21060 0.88720 1.01130 1.03778 1.18361 0.92453 0.89910 1.08814 1.23129 0.89538 0.95716 0.95694 1.74475 0.98967 1.18944 1.14824 1.49249 1.07931 1.05750 1.63549 1.18737 0.74364 0.94654 0.95943 1.21480 0.97217 1.45485 0.94014 0.93397 1.25845 0.97711 0.95085 1.00094 1.70037 1.12185 1.47993 1.26291 0.85413 0.77646 0.78834 0.78596 1.18823 1.19669 1.19978 1.22307 0.93009 0.81859 0.77237 1.90667 1.52026 1.48725 1.54409 1.21941 0.87775 1.04383 1.02911 1.21206 1.01470 0.88454 1.03097 1.24947 1.00108 0.96750 1.05578 1.20240 0.89888 0.99855 1.02837 1.84051 0.94174 1.09562 1.74073 0.90928 0.88974 0.88933 0.80430 0.95972 0.96816 0.92075 0.86983 0.84910 0.87762 0.83672 0.90694 0.91691 0.91778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.65 10.35 71.24 0.74 0.09 16 2 C -0.18 -2.77 6.45 24.51 0.16 -2.61 16 3 C -0.12 -1.99 9.49 22.59 0.21 -1.77 16 4 C -0.08 -2.06 5.93 -20.13 -0.12 -2.18 16 5 C 0.15 4.52 6.79 45.31 0.31 4.83 16 6 N -0.26 -10.89 8.43 -43.20 -0.36 -11.25 16 7 N -0.45 -21.93 3.46 -466.70 -1.61 -23.54 16 8 C 0.28 16.67 5.47 85.63 0.47 17.14 16 9 C -0.54 -33.38 9.38 25.60 0.24 -33.14 16 10 H 0.05 2.95 7.81 -2.91 -0.02 2.93 16 11 C 0.01 0.72 5.46 84.66 0.46 1.19 16 12 N -0.93 -57.57 13.29 21.45 0.28 -57.29 16 13 Si 0.97 46.45 29.54 68.60 2.03 48.47 16 14 H -0.26 -12.00 7.11 99.48 0.71 -11.30 16 15 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 16 H -0.27 -12.97 7.11 99.48 0.71 -12.26 16 17 C 0.47 21.09 7.53 87.73 0.66 21.75 16 18 O -0.58 -31.55 16.65 -3.20 -0.05 -31.60 16 19 C -0.13 -3.66 6.23 30.01 0.19 -3.47 16 20 C -0.10 -2.24 5.77 29.93 0.17 -2.06 16 21 C -0.15 -4.12 6.53 24.93 0.16 -3.96 16 22 C -0.07 -2.19 8.71 71.23 0.62 -1.56 16 23 S 0.12 2.30 23.22 -56.49 -1.31 0.99 16 24 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 25 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 26 H 0.09 0.52 8.14 -2.38 -0.02 0.50 16 27 H 0.18 1.74 6.93 -2.91 -0.02 1.72 16 28 H 0.02 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.01 0.91 7.35 -2.39 -0.02 0.89 16 30 H 0.27 15.65 8.31 -92.70 -0.77 14.88 16 31 H 0.11 2.87 8.14 -2.38 -0.02 2.85 16 32 H 0.13 3.02 8.14 -2.39 -0.02 3.00 16 33 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.15 1.74 6.61 -2.39 -0.02 1.72 16 35 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.06 2.32 7.65 -2.39 -0.02 2.30 16 37 H 0.06 2.34 7.65 -2.38 -0.02 2.32 16 Total: -1.00 -80.04 327.44 4.32 -75.71 By element: Atomic # 1 Polarization: 3.20 SS G_CDS: 1.08 Total: 4.28 kcal Atomic # 6 Polarization: -10.04 SS G_CDS: 4.27 Total: -5.77 kcal Atomic # 7 Polarization: -90.39 SS G_CDS: -1.69 Total: -92.09 kcal Atomic # 8 Polarization: -31.55 SS G_CDS: -0.05 Total: -31.60 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 2.03 Total: 48.47 kcal Atomic # 16 Polarization: 2.30 SS G_CDS: -1.31 Total: 0.99 kcal Total: -80.04 4.32 -75.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603924112.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.160 kcal (2) G-P(sol) polarization free energy of solvation -80.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds