Wall clock time and date at job start Tue Mar 31 2020 06:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86804 * 119.99728 * 2 1 4 4 H 1.48493 * 109.47512 * 269.99811 * 3 2 1 5 5 H 1.48499 * 109.46991 * 30.00500 * 3 2 1 6 6 H 1.48505 * 109.46835 * 150.00044 * 3 2 1 7 7 C 1.38797 * 120.00416 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00391 * 179.97438 * 7 2 1 9 9 S 1.76208 * 119.99622 * 359.97438 * 7 2 1 10 10 C 1.80999 * 99.99643 * 180.02562 * 9 7 2 11 11 C 1.50705 * 109.46795 * 180.02562 * 10 9 7 12 12 O 1.21275 * 120.00270 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99696 * 179.97438 * 11 10 9 14 14 C 1.47422 * 125.65218 * 359.97438 * 13 11 10 15 15 C 1.54908 * 104.83357 * 155.88832 * 14 13 11 16 16 C 1.55156 * 101.58197 * 37.01425 * 15 14 13 17 17 C 1.47031 * 125.64646 * 179.97438 * 13 11 10 18 18 H 1.08994 * 109.87878 * 300.45675 * 17 13 11 19 19 C 1.50702 * 109.88194 * 61.62480 * 17 13 11 20 20 C 1.38225 * 119.61450 * 242.53963 * 19 17 13 21 21 C 1.38633 * 119.15766 * 179.71414 * 20 19 17 22 22 C 1.38670 * 118.41942 * 0.54232 * 21 20 19 23 23 C 1.38185 * 119.16563 * 359.73685 * 22 21 20 24 24 N 1.31855 * 119.61724 * 62.80694 * 19 17 13 25 25 H 0.96995 * 119.99873 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.47529 * 60.00360 * 10 9 7 27 27 H 1.09001 * 109.47534 * 299.99793 * 10 9 7 28 28 H 1.09000 * 110.36378 * 37.05323 * 14 13 11 29 29 H 1.08998 * 110.37024 * 274.73039 * 14 13 11 30 30 H 1.08999 * 111.00895 * 278.93886 * 15 14 13 31 31 H 1.09003 * 111.00533 * 155.08158 * 15 14 13 32 32 H 1.09001 * 110.72147 * 206.13384 * 16 15 14 33 33 H 1.08997 * 110.72273 * 82.85614 * 16 15 14 34 34 H 1.08002 * 120.42252 * 359.97438 * 20 19 17 35 35 H 1.08000 * 120.78555 * 180.25585 * 21 20 19 36 36 H 1.08000 * 120.42003 * 179.75781 * 22 21 20 37 37 H 1.07993 * 119.61909 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0465 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5479 1.4402 0.7001 7 6 2.0104 -1.2020 -0.0005 8 1 3.0904 -1.2020 -0.0010 9 16 1.1294 -2.7280 -0.0005 10 6 2.5160 -3.8913 -0.0005 11 6 1.9875 -5.3027 -0.0012 12 8 0.7913 -5.5023 -0.0021 13 7 2.8443 -6.3430 -0.0018 14 6 4.3153 -6.2447 -0.0025 15 6 4.8024 -7.5822 0.6087 16 6 3.7732 -8.5851 0.0237 17 6 2.4668 -7.7640 -0.0019 18 1 1.8699 -7.9890 0.8819 19 6 1.6837 -8.0861 -1.2486 20 6 0.3751 -8.5180 -1.1406 21 6 -0.3385 -8.8060 -2.2938 22 6 0.2974 -8.6590 -3.5174 23 6 1.6101 -8.2282 -3.5466 24 7 2.2564 -7.9578 -2.4293 25 1 -0.4850 0.8400 0.0004 26 1 3.1246 -3.7313 0.8894 27 1 3.1246 -3.7313 -0.8905 28 1 4.6396 -5.4058 0.6133 29 1 4.6877 -6.1351 -1.0210 30 1 4.7483 -7.5571 1.6971 31 1 5.8124 -7.8195 0.2746 32 1 3.6695 -9.4542 0.6734 33 1 4.0589 -8.8873 -0.9838 34 1 -0.0871 -8.6257 -0.1704 35 1 -1.3637 -9.1413 -2.2403 36 1 -0.2267 -8.8782 -4.4359 37 1 2.1125 -8.1116 -4.4954 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000604345992.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:43 Heat of formation + Delta-G solvation = -19.838602 kcal Electronic energy + Delta-G solvation = -20670.327519 eV Core-core repulsion = 17537.805158 eV Total energy + Delta-G solvation = -3132.522361 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.68986 -40.36672 -38.32460 -34.61022 -33.60231 -33.20539 -32.62744 -30.48306 -29.07819 -27.68686 -25.07491 -24.45899 -23.37289 -21.99600 -20.52142 -19.58416 -18.20336 -18.11664 -17.18790 -16.90385 -16.82669 -16.60086 -16.13601 -15.88512 -15.30733 -14.96444 -14.63428 -14.41403 -14.13075 -14.09886 -13.94794 -13.58699 -13.22774 -13.07879 -12.91889 -12.88309 -12.63266 -12.23685 -12.12493 -11.74170 -11.64307 -11.16223 -11.00367 -10.78399 -10.43441 -10.31870 -9.94420 -9.67979 -8.70448 -8.36767 -6.15745 0.13654 0.37022 1.22649 1.41362 1.43496 1.54825 1.56749 2.09393 2.25463 2.87882 2.97366 3.21258 3.28227 3.57657 3.70361 3.78514 3.92609 4.03406 4.12885 4.20606 4.25389 4.28882 4.33912 4.40649 4.56432 4.67786 4.77287 4.80951 4.93801 4.99775 5.10028 5.20802 5.26711 5.34540 5.39106 5.39651 5.78733 6.17539 6.40607 7.03751 7.04174 7.11993 8.72743 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.019930 B = 0.004150 C = 0.003710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.602556 B = 6745.304065 C = 7545.290165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.015 3.985 3 Si 1.000 3.000 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.257 1.257 7 C -0.548 4.548 8 H 0.081 0.919 9 S -0.147 6.147 10 C -0.118 4.118 11 C 0.545 3.455 12 O -0.559 6.559 13 N -0.604 5.604 14 C 0.090 3.910 15 C -0.116 4.116 16 C -0.109 4.109 17 C 0.180 3.820 18 H 0.086 0.914 19 C 0.104 3.896 20 C -0.166 4.166 21 C -0.084 4.084 22 C -0.173 4.173 23 C 0.079 3.921 24 N -0.492 5.492 25 H 0.272 0.728 26 H 0.106 0.894 27 H 0.097 0.903 28 H 0.084 0.916 29 H 0.072 0.928 30 H 0.087 0.913 31 H 0.112 0.888 32 H 0.106 0.894 33 H 0.081 0.919 34 H 0.135 0.865 35 H 0.157 0.843 36 H 0.164 0.836 37 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.784 -20.886 -2.692 23.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.190 4.190 3 Si 0.821 3.179 4 H -0.193 1.193 5 H -0.201 1.201 6 H -0.181 1.181 7 C -0.695 4.695 8 H 0.099 0.901 9 S 0.080 5.920 10 C -0.269 4.269 11 C 0.333 3.667 12 O -0.437 6.437 13 N -0.338 5.338 14 C -0.031 4.031 15 C -0.154 4.154 16 C -0.148 4.148 17 C 0.076 3.924 18 H 0.104 0.896 19 C -0.035 4.035 20 C -0.186 4.186 21 C -0.110 4.110 22 C -0.193 4.193 23 C -0.078 4.078 24 N -0.202 5.202 25 H 0.081 0.919 26 H 0.125 0.875 27 H 0.115 0.885 28 H 0.103 0.897 29 H 0.090 0.910 30 H 0.106 0.894 31 H 0.130 0.870 32 H 0.124 0.876 33 H 0.100 0.900 34 H 0.153 0.847 35 H 0.175 0.825 36 H 0.181 0.819 37 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 8.698 -20.742 -2.716 22.655 hybrid contribution 0.258 1.175 -0.096 1.206 sum 8.957 -19.567 -2.812 21.702 Atomic orbital electron populations 1.70184 1.08013 1.28680 1.47935 1.26136 0.95968 1.03300 0.93567 0.84941 0.78242 0.75871 0.78847 1.19290 1.20069 1.18113 1.23190 0.95291 0.91947 1.59104 0.90084 1.85522 1.10322 0.99113 1.97012 1.23290 1.03444 0.94298 1.05904 1.19755 0.85618 0.85879 0.75445 1.90666 1.16731 1.85644 1.50635 1.48475 1.08045 1.04468 1.72805 1.22636 0.77737 1.00836 1.01929 1.22775 0.99925 0.91464 1.01211 1.22664 0.90956 0.97869 1.03263 1.20671 0.97714 0.81193 0.92860 0.89648 1.21518 0.92715 0.95336 0.93890 1.22151 0.95165 1.00534 1.00774 1.21946 1.00993 0.95894 0.92169 1.22485 0.96359 1.00625 0.99790 1.23221 0.92970 0.94682 0.96933 1.67336 1.39703 1.14565 0.98578 0.91920 0.87533 0.88510 0.89748 0.90999 0.89396 0.86965 0.87607 0.90033 0.84734 0.82502 0.81855 0.80671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.91 13.22 21.65 0.29 -56.63 16 2 C 0.02 0.87 5.49 84.86 0.47 1.34 16 3 Si 1.00 44.25 29.55 68.60 2.03 46.27 16 4 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 5 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 6 H -0.26 -10.67 7.11 99.48 0.71 -9.97 16 7 C -0.55 -32.17 9.50 67.95 0.65 -31.53 16 8 H 0.08 4.44 7.80 -2.91 -0.02 4.42 16 9 S -0.15 -8.50 20.57 -56.49 -1.16 -9.66 16 10 C -0.12 -5.15 5.16 71.24 0.37 -4.78 16 11 C 0.55 22.55 7.66 87.66 0.67 23.22 16 12 O -0.56 -27.54 15.70 -3.01 -0.05 -27.59 16 13 N -0.60 -18.55 3.06 -792.18 -2.42 -20.97 16 14 C 0.09 1.98 6.69 86.86 0.58 2.56 16 15 C -0.12 -1.65 7.08 31.99 0.23 -1.42 16 16 C -0.11 -1.85 6.43 31.78 0.20 -1.65 16 17 C 0.18 4.67 3.16 44.59 0.14 4.81 16 18 H 0.09 2.21 7.90 -2.39 -0.02 2.19 16 19 C 0.10 3.00 4.98 42.55 0.21 3.22 16 20 C -0.17 -4.55 9.72 22.36 0.22 -4.33 16 21 C -0.08 -1.94 10.18 22.47 0.23 -1.71 16 22 C -0.17 -3.65 10.11 22.36 0.23 -3.43 16 23 C 0.08 1.90 11.18 84.67 0.95 2.85 16 24 N -0.49 -14.21 9.58 -183.89 -1.76 -15.97 16 25 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 26 H 0.11 4.19 7.85 -2.40 -0.02 4.17 16 27 H 0.10 3.99 8.14 -2.39 -0.02 3.97 16 28 H 0.08 1.75 7.48 -2.39 -0.02 1.73 16 29 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.08 1.51 7.35 -2.39 -0.02 1.49 16 34 H 0.13 3.44 7.96 -2.91 -0.02 3.41 16 35 H 0.16 2.68 8.06 -2.91 -0.02 2.66 16 36 H 0.16 2.29 8.06 -2.91 -0.02 2.26 16 37 H 0.18 3.15 8.06 -2.91 -0.02 3.12 16 Total: -1.00 -80.98 329.88 3.12 -77.86 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: 1.06 Total: 17.54 kcal Atomic # 6 Polarization: -15.99 SS G_CDS: 5.13 Total: -10.86 kcal Atomic # 7 Polarization: -89.67 SS G_CDS: -3.90 Total: -93.57 kcal Atomic # 8 Polarization: -27.54 SS G_CDS: -0.05 Total: -27.59 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.27 kcal Atomic # 16 Polarization: -8.50 SS G_CDS: -1.16 Total: -9.66 kcal Total: -80.98 3.12 -77.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604345992.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.020 kcal (2) G-P(sol) polarization free energy of solvation -80.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds