Wall clock time and date at job start Tue Mar 31 2020 06:13:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47288 * 95.13403 * 3 2 1 5 5 N 1.46499 * 109.47253 * 185.45135 * 4 3 2 6 6 C 1.46500 * 119.99972 * 278.12118 * 5 4 3 7 7 C 1.50692 * 109.47176 * 269.99567 * 6 5 4 8 8 H 1.08000 * 120.00289 * 0.02562 * 7 6 5 9 9 C 1.37878 * 120.00070 * 179.97438 * 7 6 5 10 10 N 1.31512 * 120.00311 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00087 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47522 * 90.00039 * 11 9 7 13 13 H 1.48504 * 109.47053 * 210.00168 * 11 9 7 14 14 H 1.48503 * 109.46941 * 329.99771 * 11 9 7 15 15 C 1.34778 * 120.00115 * 98.11894 * 5 4 3 16 16 O 1.21590 * 120.00188 * 185.89870 * 15 5 4 17 17 C 1.47599 * 119.99885 * 5.90113 * 15 5 4 18 18 C 1.39726 * 120.08113 * 314.33023 * 17 15 5 19 19 C 1.37728 * 119.95132 * 179.74225 * 18 17 15 20 20 C 1.38929 * 120.12042 * 0.53812 * 19 18 17 21 21 O 1.35758 * 119.92349 * 179.75944 * 20 19 18 22 22 C 1.39172 * 120.15666 * 359.48419 * 20 19 18 23 23 F 1.35104 * 119.97384 * 180.25287 * 22 20 19 24 24 C 1.37889 * 120.04589 * 0.23635 * 22 20 19 25 25 H 1.08999 * 109.47270 * 335.12955 * 3 2 1 26 26 H 1.09001 * 109.47117 * 215.13421 * 3 2 1 27 27 H 1.08999 * 109.47002 * 65.45217 * 4 3 2 28 28 H 1.08999 * 109.47142 * 305.45137 * 4 3 2 29 29 H 1.08996 * 109.47362 * 30.00221 * 6 5 4 30 30 H 1.09007 * 109.46834 * 149.99974 * 6 5 4 31 31 H 0.96996 * 120.00525 * 180.02562 * 10 9 7 32 32 H 1.07999 * 120.02385 * 0.02562 * 18 17 15 33 33 H 1.08003 * 119.94104 * 180.27594 * 19 18 17 34 34 H 0.96704 * 114.00085 * 269.72708 * 21 20 19 35 35 H 1.08003 * 120.05713 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1180 0.1300 -1.4367 5 7 4.5771 0.0001 -1.4505 6 6 5.4184 1.1553 -1.1280 7 6 5.7268 1.9199 -2.3893 8 1 5.3349 1.5798 -3.3365 9 6 6.5083 3.0545 -2.3341 10 7 6.9851 3.4691 -1.1808 11 14 6.8900 4.0027 -3.8977 12 1 5.8448 5.0343 -4.1187 13 1 8.2149 4.6606 -3.7666 14 1 6.9137 3.0671 -5.0506 15 6 5.1456 -1.1821 -1.7598 16 8 6.3501 -1.3202 -1.6675 17 6 4.3060 -2.3091 -2.2108 18 6 3.1260 -2.6197 -1.5300 19 6 2.3419 -3.6686 -1.9563 20 6 2.7276 -4.4257 -3.0555 21 8 1.9541 -5.4618 -3.4693 22 6 3.9022 -4.1209 -3.7369 23 9 4.2711 -4.8563 -4.8085 24 6 4.6894 -3.0686 -3.3193 25 1 2.9718 -0.9315 0.4322 26 1 2.9710 0.8413 0.5914 27 1 2.8361 1.1043 -1.8359 28 1 2.6775 -0.6556 -2.0507 29 1 4.8915 1.8047 -0.4290 30 1 6.3484 0.8122 -0.6746 31 1 7.5346 4.2675 -1.1418 32 1 2.8268 -2.0348 -0.6728 33 1 1.4275 -3.9058 -1.4326 34 1 2.1789 -6.3085 -3.0598 35 1 5.6011 -2.8321 -3.8477 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613449650.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:14 Heat of formation + Delta-G solvation = -56.933507 kcal Electronic energy + Delta-G solvation = -22724.222960 eV Core-core repulsion = 19023.878867 eV Total energy + Delta-G solvation = -3700.344093 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.00058 -40.38172 -38.86415 -37.02182 -36.65809 -35.43322 -32.98627 -31.23093 -30.77312 -30.22971 -27.34146 -24.37826 -23.99116 -23.03379 -22.38089 -19.39734 -18.91104 -17.90718 -17.36381 -16.87366 -16.56985 -16.35064 -15.92449 -15.68236 -15.16599 -14.83524 -14.41541 -14.37730 -14.12061 -13.81041 -13.70726 -13.09878 -12.87607 -12.62356 -12.40435 -12.36978 -12.00152 -11.94446 -11.82927 -11.33818 -11.03962 -10.97618 -10.80717 -10.68613 -10.26207 -9.80061 -9.37460 -9.16188 -8.72283 -8.53015 -7.98723 -6.15302 -4.20546 0.60621 0.94267 2.63399 2.73142 2.89705 3.25284 3.29035 3.33066 3.39248 3.57182 3.72052 4.05894 4.14947 4.36369 4.55104 4.63841 4.82385 4.95578 5.02278 5.07296 5.20150 5.31217 5.46691 5.67447 5.75240 5.76829 5.88073 6.01595 6.09120 6.42883 6.81949 7.23295 7.27328 7.31784 7.49258 7.80329 8.06685 8.09181 8.65190 8.85682 9.45537 10.92798 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.013870 B = 0.005085 C = 0.004086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2018.256600 B = 5505.403362 C = 6851.618571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C 0.214 3.786 3 C -0.056 4.056 4 C 0.104 3.896 5 N -0.586 5.586 6 C 0.243 3.757 7 C -0.533 4.533 8 H 0.059 0.941 9 C 0.065 3.935 10 N -0.892 5.892 11 Si 0.897 3.103 12 H -0.280 1.280 13 H -0.285 1.285 14 H -0.274 1.274 15 C 0.551 3.449 16 O -0.521 6.521 17 C -0.093 4.093 18 C -0.101 4.101 19 C -0.122 4.122 20 C 0.084 3.916 21 O -0.488 6.488 22 C 0.071 3.929 23 F -0.131 7.131 24 C -0.091 4.091 25 H 0.111 0.889 26 H 0.124 0.876 27 H 0.096 0.904 28 H 0.085 0.915 29 H 0.039 0.961 30 H 0.051 0.949 31 H 0.265 0.735 32 H 0.146 0.854 33 H 0.142 0.858 34 H 0.393 0.607 35 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.635 -13.628 1.110 16.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.115 5.115 2 C -0.105 4.105 3 C -0.097 4.097 4 C -0.022 4.022 5 N -0.316 5.316 6 C 0.125 3.875 7 C -0.572 4.572 8 H 0.077 0.923 9 C -0.138 4.138 10 N -0.530 5.530 11 Si 0.725 3.275 12 H -0.206 1.206 13 H -0.211 1.211 14 H -0.198 1.198 15 C 0.337 3.663 16 O -0.398 6.398 17 C -0.096 4.096 18 C -0.120 4.120 19 C -0.140 4.140 20 C 0.038 3.962 21 O -0.298 6.298 22 C 0.051 3.949 23 F -0.110 7.110 24 C -0.110 4.110 25 H 0.129 0.871 26 H 0.142 0.858 27 H 0.115 0.885 28 H 0.103 0.897 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.164 0.836 33 H 0.160 0.840 34 H 0.249 0.751 35 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -9.800 -13.119 0.866 16.398 hybrid contribution 0.908 0.130 -0.796 1.214 sum -8.892 -12.989 0.070 15.741 Atomic orbital electron populations 1.81224 1.12879 1.08994 1.08399 1.29018 0.95010 0.93121 0.93317 1.20016 0.81598 1.06398 1.01730 1.21595 0.82231 1.05023 0.93331 1.48134 1.05547 1.11301 1.66639 1.19442 0.90594 0.80764 0.96717 1.21402 1.32296 1.09569 0.93946 0.92255 1.24901 0.95313 0.97196 0.96394 1.69908 1.34495 1.24351 1.24287 0.86508 0.77791 0.79890 0.83332 1.20575 1.21052 1.19849 1.17984 0.87387 0.82228 0.78688 1.90816 1.14128 1.82331 1.52493 1.20106 0.95731 0.97467 0.96341 1.21720 0.92900 0.96916 1.00440 1.21233 1.00856 0.96244 0.95671 1.18583 0.89829 0.92879 0.94885 1.84820 1.57359 1.18624 1.69012 1.17926 0.94702 0.94186 0.88100 1.91511 1.91288 1.75582 1.52596 1.21138 1.00105 0.93058 0.96718 0.87128 0.85832 0.88519 0.89667 0.94309 0.93123 0.92564 0.83635 0.83987 0.75078 0.83246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.04 18.54 42.15 0.78 -5.25 16 2 C 0.21 2.40 15.38 -20.76 -0.32 2.08 16 3 C -0.06 -0.56 5.10 -29.52 -0.15 -0.71 16 4 C 0.10 1.35 4.83 -4.04 -0.02 1.33 16 5 N -0.59 -10.37 2.46 -176.27 -0.43 -10.80 16 6 C 0.24 5.51 5.22 -5.20 -0.03 5.48 16 7 C -0.53 -13.79 9.39 -34.44 -0.32 -14.11 16 8 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 9 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 10 N -0.89 -24.73 13.29 55.43 0.74 -23.99 16 11 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 16 12 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 13 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 14 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 15 C 0.55 10.08 7.26 -12.44 -0.09 9.99 16 16 O -0.52 -11.83 16.54 5.29 0.09 -11.74 16 17 C -0.09 -1.33 5.09 -104.96 -0.53 -1.86 16 18 C -0.10 -1.11 7.39 -39.21 -0.29 -1.40 16 19 C -0.12 -1.20 9.97 -39.51 -0.39 -1.59 16 20 C 0.08 0.94 6.72 -38.98 -0.26 0.68 16 21 O -0.49 -4.76 13.35 -18.98 -0.25 -5.01 16 22 C 0.07 0.91 7.30 -39.36 -0.29 0.62 16 23 F -0.13 -1.77 17.10 2.25 0.04 -1.74 16 24 C -0.09 -1.27 9.66 -39.15 -0.38 -1.65 16 25 H 0.11 0.88 6.18 -51.93 -0.32 0.55 16 26 H 0.12 1.17 8.06 -51.93 -0.42 0.75 16 27 H 0.10 1.32 8.13 -51.93 -0.42 0.90 16 28 H 0.09 1.00 5.03 -51.93 -0.26 0.74 16 29 H 0.04 0.86 7.99 -51.93 -0.41 0.44 16 30 H 0.05 1.31 7.35 -51.92 -0.38 0.93 16 31 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 32 H 0.15 1.33 3.64 -52.49 -0.19 1.14 16 33 H 0.14 1.09 8.06 -52.48 -0.42 0.66 16 34 H 0.39 1.86 9.06 45.56 0.41 2.27 16 35 H 0.15 2.16 8.06 -52.48 -0.42 1.74 16 LS Contribution 318.58 15.07 4.80 4.80 Total: -1.00 -32.85 318.58 -4.82 -37.67 By element: Atomic # 1 Polarization: 2.23 SS G_CDS: -2.39 Total: -0.16 kcal Atomic # 6 Polarization: 3.66 SS G_CDS: -3.17 Total: 0.49 kcal Atomic # 7 Polarization: -41.13 SS G_CDS: 1.08 Total: -40.05 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: -0.17 Total: -16.76 kcal Atomic # 9 Polarization: -1.77 SS G_CDS: 0.04 Total: -1.74 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -32.85 -4.82 -37.67 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613449650.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.263 kcal (2) G-P(sol) polarization free energy of solvation -32.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds