Wall clock time and date at job start Tue Mar 31 2020 06:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47288 * 95.13403 * 3 2 1 5 5 N 1.46499 * 109.47253 * 185.45135 * 4 3 2 6 6 C 1.46500 * 119.99972 * 278.12118 * 5 4 3 7 7 C 1.50692 * 109.47176 * 269.99567 * 6 5 4 8 8 H 1.08000 * 120.00289 * 0.02562 * 7 6 5 9 9 C 1.37878 * 120.00070 * 179.97438 * 7 6 5 10 10 N 1.31512 * 120.00311 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00087 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47522 * 90.00039 * 11 9 7 13 13 H 1.48504 * 109.47053 * 210.00168 * 11 9 7 14 14 H 1.48503 * 109.46941 * 329.99771 * 11 9 7 15 15 C 1.34778 * 120.00115 * 98.11894 * 5 4 3 16 16 O 1.21590 * 120.00188 * 185.89870 * 15 5 4 17 17 C 1.47599 * 119.99885 * 5.90113 * 15 5 4 18 18 C 1.39726 * 120.08113 * 314.33023 * 17 15 5 19 19 C 1.37728 * 119.95132 * 179.74225 * 18 17 15 20 20 C 1.38929 * 120.12042 * 0.53812 * 19 18 17 21 21 O 1.35758 * 119.92349 * 179.75944 * 20 19 18 22 22 C 1.39172 * 120.15666 * 359.48419 * 20 19 18 23 23 F 1.35104 * 119.97384 * 180.25287 * 22 20 19 24 24 C 1.37889 * 120.04589 * 0.23635 * 22 20 19 25 25 H 1.08999 * 109.47270 * 335.12955 * 3 2 1 26 26 H 1.09001 * 109.47117 * 215.13421 * 3 2 1 27 27 H 1.08999 * 109.47002 * 65.45217 * 4 3 2 28 28 H 1.08999 * 109.47142 * 305.45137 * 4 3 2 29 29 H 1.08996 * 109.47362 * 30.00221 * 6 5 4 30 30 H 1.09007 * 109.46834 * 149.99974 * 6 5 4 31 31 H 0.96996 * 120.00525 * 180.02562 * 10 9 7 32 32 H 1.07999 * 120.02385 * 0.02562 * 18 17 15 33 33 H 1.08003 * 119.94104 * 180.27594 * 19 18 17 34 34 H 0.96704 * 114.00085 * 269.72708 * 21 20 19 35 35 H 1.08003 * 120.05713 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1180 0.1300 -1.4367 5 7 4.5771 0.0001 -1.4505 6 6 5.4184 1.1553 -1.1280 7 6 5.7268 1.9199 -2.3893 8 1 5.3349 1.5798 -3.3365 9 6 6.5083 3.0545 -2.3341 10 7 6.9851 3.4691 -1.1808 11 14 6.8900 4.0027 -3.8977 12 1 5.8448 5.0343 -4.1187 13 1 8.2149 4.6606 -3.7666 14 1 6.9137 3.0671 -5.0506 15 6 5.1456 -1.1821 -1.7598 16 8 6.3501 -1.3202 -1.6675 17 6 4.3060 -2.3091 -2.2108 18 6 3.1260 -2.6197 -1.5300 19 6 2.3419 -3.6686 -1.9563 20 6 2.7276 -4.4257 -3.0555 21 8 1.9541 -5.4618 -3.4693 22 6 3.9022 -4.1209 -3.7369 23 9 4.2711 -4.8563 -4.8085 24 6 4.6894 -3.0686 -3.3193 25 1 2.9718 -0.9315 0.4322 26 1 2.9710 0.8413 0.5914 27 1 2.8361 1.1043 -1.8359 28 1 2.6775 -0.6556 -2.0507 29 1 4.8915 1.8047 -0.4290 30 1 6.3484 0.8122 -0.6746 31 1 7.5346 4.2675 -1.1418 32 1 2.8268 -2.0348 -0.6728 33 1 1.4275 -3.9058 -1.4326 34 1 2.1789 -6.3085 -3.0598 35 1 5.6011 -2.8321 -3.8477 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000613449650.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:13 Heat of formation + Delta-G solvation = -79.379796 kcal Electronic energy + Delta-G solvation = -22725.196305 eV Core-core repulsion = 19023.878867 eV Total energy + Delta-G solvation = -3701.317437 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -50.01083 -41.56400 -39.93693 -38.11648 -37.61777 -36.78029 -34.86569 -32.46004 -31.79755 -31.32176 -29.03795 -25.64802 -25.39386 -23.98853 -23.73681 -20.68875 -19.74555 -19.03877 -18.58933 -18.29278 -17.91696 -17.39504 -17.10557 -16.88277 -16.52786 -15.99739 -15.77481 -15.70360 -15.05153 -14.94942 -14.77917 -14.37697 -14.23767 -13.81600 -13.63298 -13.42038 -13.25841 -13.17204 -13.03052 -12.92515 -12.67442 -12.47925 -12.17672 -11.95282 -11.69081 -11.65791 -10.85699 -10.57467 -10.12878 -9.71287 -9.54993 -8.18301 -6.30069 -0.37098 -0.00006 1.40739 1.43266 1.51698 1.60043 1.74405 1.83941 2.10942 2.43262 2.45291 2.83277 3.05807 3.14487 3.25642 3.50947 3.65956 3.87130 4.01338 4.04355 4.09151 4.41753 4.55321 4.72440 4.80201 4.87104 4.95575 5.05997 5.07899 5.18481 5.34592 5.52731 5.57920 5.84166 6.11773 6.57915 6.62081 6.67543 6.78581 7.22987 7.42178 8.88530 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.013870 B = 0.005085 C = 0.004086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2018.256600 B = 5505.403362 C = 6851.618571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C 0.243 3.757 3 C -0.046 4.046 4 C 0.100 3.900 5 N -0.584 5.584 6 C 0.257 3.743 7 C -0.545 4.545 8 H 0.052 0.948 9 C 0.017 3.983 10 N -0.922 5.922 11 Si 0.955 3.045 12 H -0.267 1.267 13 H -0.284 1.284 14 H -0.277 1.277 15 C 0.549 3.451 16 O -0.579 6.579 17 C -0.110 4.110 18 C -0.084 4.084 19 C -0.107 4.107 20 C 0.103 3.897 21 O -0.494 6.494 22 C 0.056 3.944 23 F -0.139 7.139 24 C -0.102 4.102 25 H 0.139 0.861 26 H 0.132 0.868 27 H 0.091 0.909 28 H 0.104 0.896 29 H 0.046 0.954 30 H 0.011 0.989 31 H 0.266 0.734 32 H 0.167 0.833 33 H 0.179 0.821 34 H 0.418 0.582 35 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.060 -14.656 1.292 18.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.154 5.154 2 C -0.075 4.075 3 C -0.086 4.086 4 C -0.024 4.024 5 N -0.314 5.314 6 C 0.137 3.863 7 C -0.583 4.583 8 H 0.070 0.930 9 C -0.183 4.183 10 N -0.561 5.561 11 Si 0.781 3.219 12 H -0.192 1.192 13 H -0.210 1.210 14 H -0.202 1.202 15 C 0.338 3.662 16 O -0.459 6.459 17 C -0.113 4.113 18 C -0.102 4.102 19 C -0.125 4.125 20 C 0.057 3.943 21 O -0.308 6.308 22 C 0.036 3.964 23 F -0.118 7.118 24 C -0.122 4.122 25 H 0.156 0.844 26 H 0.150 0.850 27 H 0.109 0.891 28 H 0.122 0.878 29 H 0.064 0.936 30 H 0.029 0.971 31 H 0.075 0.925 32 H 0.184 0.816 33 H 0.196 0.804 34 H 0.278 0.722 35 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -12.280 -14.171 1.049 18.781 hybrid contribution 1.621 0.347 -0.872 1.873 sum -10.659 -13.824 0.177 17.458 Atomic orbital electron populations 1.81274 1.14033 1.10509 1.09581 1.28932 0.94687 0.91785 0.92096 1.19944 0.80689 1.08341 0.99660 1.21803 0.79217 1.05541 0.95852 1.47979 1.07218 1.09908 1.66246 1.18944 0.90064 0.81951 0.95377 1.21728 1.32041 1.09811 0.94767 0.92984 1.25644 0.95339 0.98272 0.99058 1.70000 1.35275 1.24898 1.25962 0.85604 0.77811 0.78732 0.79801 1.19184 1.20963 1.20165 1.18575 0.87108 0.83087 0.77434 1.90776 1.16851 1.83498 1.54794 1.19692 0.96999 0.96898 0.97732 1.21882 0.91210 0.96991 1.00142 1.21538 1.01412 0.94757 0.94829 1.18663 0.88504 0.93047 0.94094 1.84762 1.56795 1.19640 1.69588 1.18010 0.95640 0.94179 0.88532 1.91487 1.91527 1.75670 1.53086 1.21016 1.00041 0.94002 0.97151 0.84362 0.85006 0.89108 0.87833 0.93564 0.97102 0.92473 0.81566 0.80410 0.72151 0.85122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -11.87 18.54 20.01 0.37 -11.49 16 2 C 0.24 4.68 15.38 89.44 1.38 6.05 16 3 C -0.05 -0.77 5.10 28.79 0.15 -0.62 16 4 C 0.10 2.42 4.83 86.38 0.42 2.83 16 5 N -0.58 -20.68 2.46 -829.86 -2.04 -22.73 16 6 C 0.26 11.94 5.22 85.63 0.45 12.39 16 7 C -0.54 -28.72 9.39 25.60 0.24 -28.48 16 8 H 0.05 2.75 7.81 -2.91 -0.02 2.73 16 9 C 0.02 0.90 5.46 84.66 0.46 1.36 16 10 N -0.92 -51.94 13.29 21.45 0.28 -51.66 16 11 Si 0.95 42.91 29.54 68.60 2.03 44.94 16 12 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 13 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 14 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 15 C 0.55 20.49 7.26 86.71 0.63 21.12 16 16 O -0.58 -27.67 16.54 -4.00 -0.07 -27.74 16 17 C -0.11 -3.05 5.09 -20.09 -0.10 -3.15 16 18 C -0.08 -1.57 7.39 22.51 0.17 -1.40 16 19 C -0.11 -1.64 9.97 22.31 0.22 -1.42 16 20 C 0.10 1.96 6.72 22.66 0.15 2.11 16 21 O -0.49 -7.70 13.35 -90.84 -1.21 -8.92 16 22 C 0.06 1.38 7.30 22.41 0.16 1.54 16 23 F -0.14 -3.68 17.10 44.97 0.77 -2.91 16 24 C -0.10 -2.90 9.66 22.55 0.22 -2.68 16 25 H 0.14 1.63 6.18 -2.39 -0.01 1.61 16 26 H 0.13 2.15 8.06 -2.39 -0.02 2.13 16 27 H 0.09 2.34 8.13 -2.39 -0.02 2.32 16 28 H 0.10 2.14 5.03 -2.39 -0.01 2.13 16 29 H 0.05 2.06 7.99 -2.39 -0.02 2.04 16 30 H 0.01 0.59 7.35 -2.38 -0.02 0.57 16 31 H 0.27 14.24 8.31 -92.71 -0.77 13.47 16 32 H 0.17 2.33 3.64 -2.91 -0.01 2.32 16 33 H 0.18 1.59 8.06 -2.91 -0.02 1.56 16 34 H 0.42 2.23 9.06 -74.05 -0.67 1.56 16 35 H 0.13 4.08 8.06 -2.91 -0.02 4.05 16 Total: -1.00 -73.84 318.58 5.16 -68.68 By element: Atomic # 1 Polarization: 1.68 SS G_CDS: 0.50 Total: 2.18 kcal Atomic # 6 Polarization: 5.11 SS G_CDS: 4.54 Total: 9.65 kcal Atomic # 7 Polarization: -84.49 SS G_CDS: -1.39 Total: -85.88 kcal Atomic # 8 Polarization: -35.38 SS G_CDS: -1.28 Total: -36.66 kcal Atomic # 9 Polarization: -3.68 SS G_CDS: 0.77 Total: -2.91 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Total: -73.84 5.16 -68.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613449650.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.701 kcal (2) G-P(sol) polarization free energy of solvation -73.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds