Wall clock time and date at job start Tue Mar 31 2020 06:55:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09008 * 109.47453 * 2 1 4 4 C 1.53003 * 109.47058 * 239.99942 * 2 1 3 5 5 C 1.50705 * 109.46989 * 175.00225 * 4 2 1 6 6 H 1.07995 * 119.99953 * 359.97438 * 5 4 2 7 7 C 1.37876 * 119.99587 * 180.02562 * 5 4 2 8 8 N 1.31521 * 119.99522 * 180.02562 * 7 5 4 9 9 Si 1.86792 * 120.00416 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.47083 * 90.00104 * 9 7 5 11 11 H 1.48496 * 109.47571 * 210.00267 * 9 7 5 12 12 H 1.48507 * 109.47327 * 330.00487 * 9 7 5 13 13 S 1.81007 * 109.47269 * 119.99765 * 2 1 3 14 14 C 1.76196 * 99.99922 * 294.99965 * 13 2 1 15 15 N 1.32813 * 118.86288 * 359.97438 * 14 13 2 16 16 C 1.32022 * 120.73905 * 180.13002 * 15 14 13 17 17 C 1.40149 * 118.60333 * 0.25487 * 16 15 14 18 18 C 1.39987 * 119.04050 * 359.28075 * 17 16 15 19 19 N 1.32148 * 118.51388 * 0.83355 * 18 17 16 20 20 C 1.50253 * 121.59678 * 180.82191 * 18 17 16 21 21 C 1.53111 * 110.99567 * 337.02950 * 20 18 17 22 22 C 1.53424 * 109.20931 * 54.84652 * 21 20 18 23 23 C 1.46898 * 120.64824 * 179.34070 * 17 16 15 24 24 O 1.21308 * 121.23471 * 348.54340 * 23 17 16 25 25 H 1.08998 * 109.47208 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47127 * 300.00119 * 1 2 3 27 27 H 1.09004 * 109.47109 * 59.99601 * 1 2 3 28 28 H 1.08998 * 109.46792 * 294.99869 * 4 2 1 29 29 H 1.08996 * 109.47104 * 55.00183 * 4 2 1 30 30 H 0.97002 * 119.99838 * 179.97438 * 8 7 5 31 31 H 1.08002 * 120.69667 * 179.97438 * 16 15 14 32 32 H 1.09002 * 109.13579 * 98.12915 * 20 18 17 33 33 H 1.08991 * 109.14418 * 217.26840 * 20 18 17 34 34 H 1.08997 * 109.86739 * 294.77349 * 21 20 18 35 35 H 1.08998 * 109.35836 * 174.60590 * 21 20 18 36 36 H 1.09004 * 109.86012 * 176.30615 * 22 21 20 37 37 H 1.08998 * 109.86348 * 55.27809 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5419 -0.6150 -1.3127 6 1 4.0789 -0.0856 -0.5396 7 6 4.2303 -1.1927 -2.3583 8 7 5.5411 -1.1004 -2.4134 9 14 3.3014 -2.1078 -3.6959 10 1 2.9397 -1.1626 -4.7826 11 1 4.1601 -3.1879 -4.2447 12 1 2.0657 -2.7004 -3.1237 13 16 2.1333 -0.8532 1.4779 14 6 1.5440 0.2423 2.7257 15 7 0.8676 1.3255 2.3606 16 6 0.4113 2.1727 3.2644 17 6 0.6601 1.9081 4.6180 18 6 1.3680 0.7514 4.9654 19 7 1.7916 -0.0432 3.9983 20 6 1.6509 0.4024 6.3992 21 6 1.6039 1.6491 7.2868 22 6 0.2537 2.3527 7.0979 23 6 0.1856 2.8280 5.6604 24 8 -0.2450 3.9271 5.3808 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.7516 -1.7715 -1.2055 29 1 1.6053 -0.2618 -2.1370 30 1 6.0254 -1.5072 -3.1488 31 1 -0.1383 3.0534 2.9667 32 1 0.9130 -0.3226 6.7428 33 1 2.6447 -0.0394 6.4701 34 1 2.4098 2.3298 7.0124 35 1 1.7170 1.3543 8.3301 36 1 0.1827 3.2053 7.7734 37 1 -0.5590 1.6538 7.2956 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000629195698.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:33 Heat of formation + Delta-G solvation = -6.675667 kcal Electronic energy + Delta-G solvation = -20352.136973 eV Core-core repulsion = 17220.185399 eV Total energy + Delta-G solvation = -3131.951574 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.30886 -39.10845 -36.38886 -34.83029 -33.53187 -32.20984 -31.42885 -29.05076 -28.10125 -25.24971 -24.42834 -23.18397 -22.10164 -20.70439 -19.99286 -17.90511 -17.64460 -16.82357 -16.70856 -15.80133 -15.21172 -15.10904 -14.78246 -14.50319 -14.35234 -14.17350 -13.74947 -13.28212 -12.94036 -12.67723 -12.51502 -12.24144 -11.94640 -11.84395 -11.67342 -11.53094 -11.13209 -11.03924 -10.66272 -10.62127 -10.08411 -9.91319 -9.81047 -9.77136 -9.57466 -9.33246 -9.22560 -8.61539 -7.37443 -6.10969 -4.10945 0.17565 1.04694 1.60083 2.10335 2.68889 3.25784 3.34089 3.35716 3.57600 3.76993 3.85733 4.20986 4.37988 4.39489 4.50823 4.57026 4.69565 4.93436 5.04812 5.20464 5.22741 5.38127 5.42701 5.53129 5.58890 5.64830 5.66513 5.71424 5.93937 6.11573 6.36540 6.37238 6.59706 6.82816 6.94086 7.10152 7.23733 7.62083 7.85577 8.42144 8.94002 9.49093 11.01623 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.032732 B = 0.003585 C = 0.003428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.229027 B = 7809.158935 C = 8167.037459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.065 4.065 3 H 0.099 0.901 4 C 0.000 4.000 5 C -0.528 4.528 6 H 0.080 0.920 7 C 0.072 3.928 8 N -0.895 5.895 9 Si 0.875 3.125 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.264 1.264 13 S 0.073 5.927 14 C 0.313 3.687 15 N -0.530 5.530 16 C 0.224 3.776 17 C -0.316 4.316 18 C 0.243 3.757 19 N -0.517 5.517 20 C -0.079 4.079 21 C -0.112 4.112 22 C -0.164 4.164 23 C 0.415 3.585 24 O -0.459 6.459 25 H 0.053 0.947 26 H 0.067 0.933 27 H 0.062 0.938 28 H 0.026 0.974 29 H 0.035 0.965 30 H 0.264 0.736 31 H 0.176 0.824 32 H 0.101 0.899 33 H 0.100 0.900 34 H 0.074 0.926 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.508 3.638 18.533 22.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.195 4.195 3 H 0.117 0.883 4 C -0.039 4.039 5 C -0.566 4.566 6 H 0.098 0.902 7 C -0.130 4.130 8 N -0.533 5.533 9 Si 0.702 3.298 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.189 1.189 13 S 0.316 5.684 14 C -0.057 4.057 15 N -0.249 5.249 16 C 0.053 3.947 17 C -0.328 4.328 18 C 0.091 3.909 19 N -0.235 5.235 20 C -0.117 4.117 21 C -0.150 4.150 22 C -0.202 4.202 23 C 0.292 3.708 24 O -0.334 6.334 25 H 0.072 0.928 26 H 0.086 0.914 27 H 0.081 0.919 28 H 0.044 0.956 29 H 0.053 0.947 30 H 0.074 0.926 31 H 0.193 0.807 32 H 0.119 0.881 33 H 0.118 0.882 34 H 0.092 0.908 35 H 0.107 0.893 36 H 0.115 0.885 37 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -10.512 2.346 17.456 20.511 hybrid contribution -1.259 1.240 -0.349 1.801 sum -11.771 3.586 17.107 21.073 Atomic orbital electron populations 1.22157 0.94041 1.01786 1.02748 1.23538 0.97603 1.03310 0.95011 0.88278 1.19576 0.98036 0.95622 0.90678 1.21128 0.89147 1.36044 1.10276 0.90166 1.24981 0.94717 0.95596 0.97694 1.69907 1.06533 1.44748 1.32132 0.86853 0.80357 0.80113 0.82486 1.20154 1.21181 1.18907 1.86544 1.62765 1.25512 0.93589 1.26278 0.90298 0.94061 0.95080 1.69173 1.13905 1.04583 1.37217 1.23569 0.88586 0.94936 0.87638 1.21590 1.12070 1.01774 0.97351 1.21830 0.86138 0.87021 0.95936 1.68613 1.23416 1.32176 0.99328 1.20535 1.04942 0.98830 0.87404 1.21606 0.96584 0.96172 1.00632 1.22340 0.99841 1.02921 0.95063 1.22238 0.72870 0.85095 0.90596 1.90551 1.36075 1.21092 1.85703 0.92786 0.91393 0.91926 0.95610 0.94697 0.92570 0.80697 0.88132 0.88183 0.90773 0.89297 0.88507 0.87854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.44 8.95 37.15 0.33 -2.10 16 2 C -0.07 -1.28 2.13 -26.73 -0.06 -1.34 16 3 H 0.10 2.05 7.94 -51.91 -0.41 1.64 16 4 C 0.00 0.00 3.51 -27.88 -0.10 -0.10 16 5 C -0.53 -14.46 9.09 -34.44 -0.31 -14.77 16 6 H 0.08 2.39 7.84 -52.49 -0.41 1.98 16 7 C 0.07 2.05 5.47 -17.82 -0.10 1.96 16 8 N -0.90 -27.04 13.96 55.43 0.77 -26.27 16 9 Si 0.87 21.02 27.47 -169.99 -4.67 16.35 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.26 -6.07 6.54 56.52 0.37 -5.70 16 13 S 0.07 1.42 21.00 -107.50 -2.26 -0.84 16 14 C 0.31 5.51 7.65 -90.44 -0.69 4.82 16 15 N -0.53 -8.77 6.79 -13.00 -0.09 -8.86 16 16 C 0.22 3.15 10.90 -16.75 -0.18 2.96 16 17 C -0.32 -4.00 5.82 -105.02 -0.61 -4.61 16 18 C 0.24 3.07 6.70 -82.02 -0.55 2.52 16 19 N -0.52 -8.30 10.31 -9.40 -0.10 -8.40 16 20 C -0.08 -0.63 5.96 -28.04 -0.17 -0.80 16 21 C -0.11 -0.66 5.92 -26.45 -0.16 -0.82 16 22 C -0.16 -1.10 6.17 -27.24 -0.17 -1.27 16 23 C 0.42 4.53 6.89 -30.38 -0.21 4.32 16 24 O -0.46 -6.27 17.37 5.53 0.10 -6.17 16 25 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 26 H 0.07 1.08 5.62 -51.93 -0.29 0.79 16 27 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.03 0.59 7.20 -51.93 -0.37 0.22 16 29 H 0.04 0.78 7.57 -51.93 -0.39 0.39 16 30 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 31 H 0.18 2.09 7.82 -52.49 -0.41 1.68 16 32 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 LS Contribution 320.23 15.07 4.83 4.83 Total: -1.00 -32.08 320.23 -9.23 -41.30 By element: Atomic # 1 Polarization: 2.12 SS G_CDS: -4.84 Total: -2.72 kcal Atomic # 6 Polarization: -6.26 SS G_CDS: -2.97 Total: -9.23 kcal Atomic # 7 Polarization: -44.11 SS G_CDS: 0.59 Total: -43.52 kcal Atomic # 8 Polarization: -6.27 SS G_CDS: 0.10 Total: -6.17 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.67 Total: 16.35 kcal Atomic # 16 Polarization: 1.42 SS G_CDS: -2.26 Total: -0.84 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -32.08 -9.23 -41.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000629195698.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.629 kcal (2) G-P(sol) polarization free energy of solvation -32.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds