Wall clock time and date at job start Tue Mar 31 2020 06:55:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09008 * 109.47453 * 2 1 4 4 C 1.53003 * 109.47058 * 239.99942 * 2 1 3 5 5 C 1.50705 * 109.46989 * 175.00225 * 4 2 1 6 6 H 1.07995 * 119.99953 * 359.97438 * 5 4 2 7 7 C 1.37876 * 119.99587 * 180.02562 * 5 4 2 8 8 N 1.31521 * 119.99522 * 180.02562 * 7 5 4 9 9 Si 1.86792 * 120.00416 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.47083 * 90.00104 * 9 7 5 11 11 H 1.48496 * 109.47571 * 210.00267 * 9 7 5 12 12 H 1.48507 * 109.47327 * 330.00487 * 9 7 5 13 13 S 1.81007 * 109.47269 * 119.99765 * 2 1 3 14 14 C 1.76196 * 99.99922 * 294.99965 * 13 2 1 15 15 N 1.32813 * 118.86288 * 359.97438 * 14 13 2 16 16 C 1.32022 * 120.73905 * 180.13002 * 15 14 13 17 17 C 1.40149 * 118.60333 * 0.25487 * 16 15 14 18 18 C 1.39987 * 119.04050 * 359.28075 * 17 16 15 19 19 N 1.32148 * 118.51388 * 0.83355 * 18 17 16 20 20 C 1.50253 * 121.59678 * 180.82191 * 18 17 16 21 21 C 1.53111 * 110.99567 * 337.02950 * 20 18 17 22 22 C 1.53424 * 109.20931 * 54.84652 * 21 20 18 23 23 C 1.46898 * 120.64824 * 179.34070 * 17 16 15 24 24 O 1.21308 * 121.23471 * 348.54340 * 23 17 16 25 25 H 1.08998 * 109.47208 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47127 * 300.00119 * 1 2 3 27 27 H 1.09004 * 109.47109 * 59.99601 * 1 2 3 28 28 H 1.08998 * 109.46792 * 294.99869 * 4 2 1 29 29 H 1.08996 * 109.47104 * 55.00183 * 4 2 1 30 30 H 0.97002 * 119.99838 * 179.97438 * 8 7 5 31 31 H 1.08002 * 120.69667 * 179.97438 * 16 15 14 32 32 H 1.09002 * 109.13579 * 98.12915 * 20 18 17 33 33 H 1.08991 * 109.14418 * 217.26840 * 20 18 17 34 34 H 1.08997 * 109.86739 * 294.77349 * 21 20 18 35 35 H 1.08998 * 109.35836 * 174.60590 * 21 20 18 36 36 H 1.09004 * 109.86012 * 176.30615 * 22 21 20 37 37 H 1.08998 * 109.86348 * 55.27809 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5419 -0.6150 -1.3127 6 1 4.0789 -0.0856 -0.5396 7 6 4.2303 -1.1927 -2.3583 8 7 5.5411 -1.1004 -2.4134 9 14 3.3014 -2.1078 -3.6959 10 1 2.9397 -1.1626 -4.7826 11 1 4.1601 -3.1879 -4.2447 12 1 2.0657 -2.7004 -3.1237 13 16 2.1333 -0.8532 1.4779 14 6 1.5440 0.2423 2.7257 15 7 0.8676 1.3255 2.3606 16 6 0.4113 2.1727 3.2644 17 6 0.6601 1.9081 4.6180 18 6 1.3680 0.7514 4.9654 19 7 1.7916 -0.0432 3.9983 20 6 1.6509 0.4024 6.3992 21 6 1.6039 1.6491 7.2868 22 6 0.2537 2.3527 7.0979 23 6 0.1856 2.8280 5.6604 24 8 -0.2450 3.9271 5.3808 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.7516 -1.7715 -1.2055 29 1 1.6053 -0.2618 -2.1370 30 1 6.0254 -1.5072 -3.1488 31 1 -0.1383 3.0534 2.9667 32 1 0.9130 -0.3226 6.7428 33 1 2.6447 -0.0394 6.4701 34 1 2.4098 2.3298 7.0124 35 1 1.7170 1.3543 8.3301 36 1 0.1827 3.2053 7.7734 37 1 -0.5590 1.6538 7.2956 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000629195698.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:33 Heat of formation + Delta-G solvation = -25.960658 kcal Electronic energy + Delta-G solvation = -20352.973233 eV Core-core repulsion = 17220.185399 eV Total energy + Delta-G solvation = -3132.787834 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.38860 -40.10272 -37.24539 -36.51646 -34.69085 -34.15491 -32.47303 -29.90864 -29.80644 -26.35448 -25.34524 -24.99869 -22.93932 -22.34948 -20.89458 -19.07316 -18.93281 -18.79352 -17.64031 -17.02771 -16.50570 -16.37012 -16.04917 -15.67802 -15.45685 -15.03181 -14.89177 -14.63779 -14.25006 -14.11346 -13.88466 -13.55844 -13.44745 -12.83016 -12.72223 -12.63490 -12.38202 -12.32423 -11.89898 -11.78298 -11.77211 -11.58666 -11.44992 -11.16594 -10.98602 -10.76046 -10.70615 -10.39620 -8.83892 -8.27539 -6.32825 -0.93781 -0.05887 0.20875 1.14660 1.21879 1.37035 1.39181 1.49925 2.36214 2.45581 2.88462 2.94601 3.07621 3.26828 3.31187 3.68114 3.89135 3.98865 4.00567 4.15977 4.24953 4.28365 4.48588 4.59736 4.71407 4.80570 4.85933 4.90938 4.96340 5.06791 5.09078 5.19678 5.24565 5.27411 5.33401 5.58314 5.70855 6.25145 6.35882 6.66767 6.73889 7.30583 8.88524 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.032732 B = 0.003585 C = 0.003428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.229027 B = 7809.158935 C = 8167.037459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.053 4.053 3 H 0.079 0.921 4 C 0.003 3.997 5 C -0.529 4.529 6 H 0.038 0.962 7 C 0.009 3.991 8 N -0.948 5.948 9 Si 0.945 3.055 10 H -0.265 1.265 11 H -0.286 1.286 12 H -0.243 1.243 13 S 0.018 5.982 14 C 0.307 3.693 15 N -0.545 5.545 16 C 0.209 3.791 17 C -0.310 4.310 18 C 0.241 3.759 19 N -0.534 5.534 20 C -0.079 4.079 21 C -0.104 4.104 22 C -0.154 4.154 23 C 0.417 3.583 24 O -0.488 6.488 25 H 0.062 0.938 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.031 0.969 29 H 0.047 0.953 30 H 0.266 0.734 31 H 0.192 0.808 32 H 0.128 0.872 33 H 0.103 0.897 34 H 0.064 0.936 35 H 0.127 0.873 36 H 0.113 0.887 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.931 3.530 20.640 25.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.182 4.182 3 H 0.098 0.902 4 C -0.035 4.035 5 C -0.568 4.568 6 H 0.056 0.944 7 C -0.188 4.188 8 N -0.588 5.588 9 Si 0.768 3.232 10 H -0.190 1.190 11 H -0.212 1.212 12 H -0.166 1.166 13 S 0.259 5.741 14 C -0.065 4.065 15 N -0.264 5.264 16 C 0.039 3.961 17 C -0.321 4.321 18 C 0.090 3.910 19 N -0.253 5.253 20 C -0.116 4.116 21 C -0.142 4.142 22 C -0.191 4.191 23 C 0.296 3.704 24 O -0.365 6.365 25 H 0.082 0.918 26 H 0.091 0.909 27 H 0.096 0.904 28 H 0.049 0.951 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.208 0.792 32 H 0.145 0.855 33 H 0.121 0.879 34 H 0.083 0.917 35 H 0.145 0.855 36 H 0.132 0.868 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -12.971 2.278 19.614 23.625 hybrid contribution -0.497 1.426 -0.768 1.694 sum -13.468 3.704 18.846 23.458 Atomic orbital electron populations 1.22077 0.91204 1.02687 1.03670 1.23314 0.99700 1.01482 0.93729 0.90237 1.19491 0.94864 0.96404 0.92788 1.21367 0.91670 1.34804 1.08914 0.94376 1.25946 0.95531 0.96779 1.00558 1.70070 1.08599 1.46676 1.33451 0.85737 0.79516 0.78761 0.79180 1.18977 1.21187 1.16630 1.86479 1.65293 1.27235 0.95134 1.25739 0.91454 0.94230 0.95120 1.69093 1.14298 1.04725 1.38301 1.23948 0.88752 0.95046 0.88377 1.22009 1.10682 1.01935 0.97458 1.22680 0.84777 0.86163 0.97405 1.68616 1.24035 1.33386 0.99256 1.20797 1.05824 1.00598 0.84419 1.21647 0.95687 0.94715 1.02147 1.22411 1.01155 1.04125 0.91440 1.22830 0.71413 0.84040 0.92165 1.90553 1.37301 1.22251 1.86407 0.91847 0.90950 0.90437 0.95090 0.93457 0.92504 0.79161 0.85470 0.87916 0.91696 0.85470 0.86816 0.85256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.40 8.95 71.98 0.64 -3.76 16 2 C -0.05 -2.12 2.13 30.59 0.07 -2.05 16 3 H 0.08 3.44 7.94 -2.39 -0.02 3.42 16 4 C 0.00 0.15 3.51 29.85 0.10 0.26 16 5 C -0.53 -30.06 9.09 25.60 0.23 -29.83 16 6 H 0.04 2.42 7.84 -2.91 -0.02 2.40 16 7 C 0.01 0.53 5.47 84.65 0.46 0.99 16 8 N -0.95 -59.43 13.96 21.45 0.30 -59.13 16 9 Si 0.94 43.40 27.47 68.60 1.88 45.28 16 10 H -0.26 -11.63 7.11 99.48 0.71 -10.93 16 11 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 12 H -0.24 -10.23 6.54 99.48 0.65 -9.58 16 13 S 0.02 0.71 21.00 -56.49 -1.19 -0.47 16 14 C 0.31 11.03 7.65 180.29 1.38 12.41 16 15 N -0.55 -18.26 6.79 -195.06 -1.32 -19.58 16 16 C 0.21 5.78 10.90 85.13 0.93 6.70 16 17 C -0.31 -7.40 5.82 -20.12 -0.12 -7.52 16 18 C 0.24 5.69 6.70 42.80 0.29 5.97 16 19 N -0.53 -17.08 10.31 -183.67 -1.89 -18.97 16 20 C -0.08 -0.99 5.96 29.74 0.18 -0.81 16 21 C -0.10 -0.77 5.92 30.77 0.18 -0.59 16 22 C -0.15 -1.39 6.17 30.26 0.19 -1.20 16 23 C 0.42 8.09 6.89 28.23 0.19 8.29 16 24 O -0.49 -12.51 17.37 -3.12 -0.05 -12.57 16 25 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 26 H 0.07 2.26 5.62 -2.39 -0.01 2.25 16 27 H 0.08 2.22 8.14 -2.38 -0.02 2.21 16 28 H 0.03 1.39 7.20 -2.39 -0.02 1.37 16 29 H 0.05 2.05 7.57 -2.39 -0.02 2.03 16 30 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 31 H 0.19 4.49 7.82 -2.91 -0.02 4.47 16 32 H 0.13 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.13 0.12 8.14 -2.39 -0.02 0.10 16 36 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.13 0.61 8.14 -2.39 -0.02 0.59 16 Total: -1.00 -73.71 320.23 3.48 -70.23 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: 1.03 Total: 6.35 kcal Atomic # 6 Polarization: -15.86 SS G_CDS: 4.73 Total: -11.14 kcal Atomic # 7 Polarization: -94.77 SS G_CDS: -2.92 Total: -97.68 kcal Atomic # 8 Polarization: -12.51 SS G_CDS: -0.05 Total: -12.57 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 1.88 Total: 45.28 kcal Atomic # 16 Polarization: 0.71 SS G_CDS: -1.19 Total: -0.47 kcal Total: -73.71 3.48 -70.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000629195698.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.270 kcal (2) G-P(sol) polarization free energy of solvation -73.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds