Wall clock time and date at job start Tue Mar 31 2020 06:55:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47159 * 2 1 4 4 C 1.52997 * 109.47153 * 120.00132 * 2 1 3 5 5 C 1.50706 * 109.47238 * 184.99569 * 4 2 1 6 6 H 1.07999 * 119.99515 * 0.02562 * 5 4 2 7 7 C 1.37870 * 120.00176 * 180.02562 * 5 4 2 8 8 N 1.31520 * 119.99883 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00043 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47216 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47389 * 119.99848 * 9 7 5 12 12 H 1.48501 * 109.47057 * 239.99829 * 9 7 5 13 13 S 1.80997 * 109.46999 * 240.00173 * 2 1 3 14 14 C 1.76204 * 100.00146 * 64.99976 * 13 2 1 15 15 N 1.32816 * 118.85911 * 359.73509 * 14 13 2 16 16 C 1.32016 * 120.73591 * 179.81079 * 15 14 13 17 17 C 1.40156 * 118.60064 * 0.51663 * 16 15 14 18 18 C 1.39971 * 119.04540 * 359.58415 * 17 16 15 19 19 N 1.32148 * 118.51865 * 0.25190 * 18 17 16 20 20 C 1.50257 * 121.59647 * 180.54876 * 18 17 16 21 21 C 1.52677 * 111.15838 * 337.53076 * 20 18 17 22 22 C 1.53428 * 109.50313 * 54.32379 * 21 20 18 23 23 C 1.46902 * 120.63824 * 179.50560 * 17 16 15 24 24 O 1.21310 * 121.24626 * 348.49579 * 23 17 16 25 25 H 1.09006 * 109.46634 * 299.99965 * 1 2 3 26 26 H 1.09000 * 109.47090 * 59.99702 * 1 2 3 27 27 H 1.08993 * 109.47376 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46832 * 64.99883 * 4 2 1 29 29 H 1.09000 * 109.47611 * 305.00180 * 4 2 1 30 30 H 0.97004 * 119.99507 * 180.02562 * 8 7 5 31 31 H 1.07997 * 120.69800 * 180.25333 * 16 15 14 32 32 H 1.08995 * 109.14047 * 97.95708 * 20 18 17 33 33 H 1.08997 * 109.14076 * 217.09536 * 20 18 17 34 34 H 1.09000 * 109.46278 * 294.32075 * 21 20 18 35 35 H 1.08993 * 109.46142 * 174.33187 * 21 20 18 36 36 H 1.08999 * 109.85925 * 176.58723 * 22 21 20 37 37 H 1.08997 * 109.85874 * 55.56602 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5420 -0.6150 1.3126 6 1 4.0789 -0.0856 0.5395 7 6 4.2305 -1.1936 2.3576 8 7 3.5765 -1.8388 3.2988 9 14 6.0921 -1.0613 2.4366 10 1 6.5837 -0.2911 1.2661 11 1 6.4864 -0.3661 3.6882 12 1 6.6863 -2.4222 2.4180 13 16 2.1333 -0.8532 -1.4779 14 6 1.5439 0.2424 -2.7257 15 7 0.8625 1.3225 -2.3608 16 6 0.4070 2.1701 -3.2646 17 6 0.6479 1.9007 -4.6188 18 6 1.3680 0.7515 -4.9654 19 7 1.7916 -0.0432 -3.9983 20 6 1.6695 0.4137 -6.3981 21 6 0.6832 1.0944 -7.3441 22 6 0.6711 2.6043 -7.0716 23 6 0.1521 2.8080 -5.6623 24 8 -0.6428 3.6876 -5.4057 25 1 -0.3633 0.5139 0.8901 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.7516 -1.7715 1.2055 29 1 1.6054 -0.2619 2.1370 30 1 4.0610 -2.2456 4.0342 31 1 -0.1435 3.0503 -2.9670 32 1 2.6803 0.7434 -6.6379 33 1 1.6057 -0.6662 -6.5317 34 1 -0.3151 0.6880 -7.1819 35 1 0.9858 0.9139 -8.3755 36 1 0.0143 3.1038 -7.7839 37 1 1.6817 3.0038 -7.1554 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000629195699.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:35 Heat of formation + Delta-G solvation = -11.180191 kcal Electronic energy + Delta-G solvation = -20333.793846 eV Core-core repulsion = 17201.646941 eV Total energy + Delta-G solvation = -3132.146905 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.30208 -39.10274 -36.40411 -34.69890 -33.52357 -32.17561 -31.38859 -29.06111 -27.54757 -25.22935 -24.42950 -23.36822 -22.09468 -20.77358 -19.97992 -17.89052 -17.63064 -16.72562 -16.41708 -15.65357 -15.32753 -15.05885 -14.70043 -14.56025 -14.42534 -14.18724 -13.72322 -13.19346 -13.02790 -12.63160 -12.31205 -12.05868 -11.81458 -11.64997 -11.63713 -11.38531 -11.03177 -10.84476 -10.67894 -10.65283 -10.47799 -9.96520 -9.77366 -9.62671 -9.51030 -9.22877 -9.17341 -8.45000 -7.35116 -6.09717 -4.12666 0.18689 1.05891 1.64762 2.10807 2.77141 3.28140 3.36064 3.41031 3.58669 3.77455 3.86366 4.22047 4.40327 4.40940 4.50292 4.56094 4.70353 4.94095 5.06027 5.20517 5.27891 5.37907 5.42304 5.59217 5.64999 5.68830 5.70296 5.81275 6.07577 6.13808 6.49768 6.56633 6.72719 6.84976 7.24014 7.44809 7.49590 7.86879 7.87414 8.22471 8.92302 9.52390 11.01196 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.027660 B = 0.003637 C = 0.003461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.035701 B = 7696.060422 C = 8089.324340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.070 4.070 3 H 0.093 0.907 4 C 0.036 3.964 5 C -0.525 4.525 6 H 0.063 0.937 7 C 0.061 3.939 8 N -0.892 5.892 9 Si 0.892 3.108 10 H -0.271 1.271 11 H -0.284 1.284 12 H -0.283 1.283 13 S 0.064 5.936 14 C 0.313 3.687 15 N -0.529 5.529 16 C 0.224 3.776 17 C -0.317 4.317 18 C 0.243 3.757 19 N -0.518 5.518 20 C -0.079 4.079 21 C -0.112 4.112 22 C -0.164 4.164 23 C 0.415 3.585 24 O -0.459 6.459 25 H 0.062 0.938 26 H 0.064 0.936 27 H 0.053 0.947 28 H 0.027 0.973 29 H 0.041 0.959 30 H 0.262 0.738 31 H 0.176 0.824 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.072 0.928 35 H 0.088 0.912 36 H 0.097 0.903 37 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.010 5.811 -20.216 21.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.199 4.199 3 H 0.112 0.888 4 C -0.003 4.003 5 C -0.564 4.564 6 H 0.081 0.919 7 C -0.141 4.141 8 N -0.531 5.531 9 Si 0.720 3.280 10 H -0.195 1.195 11 H -0.210 1.210 12 H -0.209 1.209 13 S 0.307 5.693 14 C -0.057 4.057 15 N -0.247 5.247 16 C 0.052 3.948 17 C -0.329 4.329 18 C 0.090 3.910 19 N -0.236 5.236 20 C -0.117 4.117 21 C -0.150 4.150 22 C -0.202 4.202 23 C 0.292 3.708 24 O -0.335 6.335 25 H 0.080 0.920 26 H 0.083 0.917 27 H 0.072 0.928 28 H 0.045 0.955 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.193 0.807 32 H 0.118 0.882 33 H 0.118 0.882 34 H 0.091 0.909 35 H 0.107 0.893 36 H 0.115 0.885 37 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -5.354 4.354 -19.096 20.305 hybrid contribution 0.117 1.757 -0.278 1.782 sum -5.236 6.111 -19.374 20.979 Atomic orbital electron populations 1.22124 0.94142 1.01758 1.02460 1.23781 0.97756 1.03003 0.95381 0.88835 1.19118 0.96524 0.95647 0.88989 1.21283 0.91468 1.34998 1.08633 0.91894 1.24985 0.98619 0.94978 0.95484 1.69964 1.35657 1.35471 1.11993 0.86521 0.85517 0.77934 0.78053 1.19535 1.20970 1.20868 1.86513 1.62811 1.25984 0.94010 1.26331 0.90429 0.93891 0.95037 1.69192 1.13787 1.04542 1.37214 1.23579 0.88271 0.95210 0.87704 1.21582 1.11617 1.02328 0.97346 1.21813 0.85770 0.87463 0.95941 1.68621 1.23739 1.31924 0.99350 1.20451 1.00906 1.03159 0.87189 1.21518 1.00180 0.93233 1.00026 1.22335 1.04133 0.98337 0.95368 1.22235 0.78180 0.80425 0.89939 1.90550 1.27982 1.30114 1.84827 0.91951 0.91726 0.92804 0.95468 0.94126 0.92852 0.80722 0.88194 0.88189 0.90921 0.89296 0.88494 0.87822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.57 8.95 37.16 0.33 -2.24 16 2 C -0.07 -1.43 2.13 -26.73 -0.06 -1.48 16 3 H 0.09 1.97 7.94 -51.92 -0.41 1.55 16 4 C 0.04 0.88 4.44 -27.88 -0.12 0.76 16 5 C -0.53 -14.22 8.53 -34.44 -0.29 -14.51 16 6 H 0.06 1.69 7.60 -52.49 -0.40 1.29 16 7 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 8 N -0.89 -25.95 13.29 55.43 0.74 -25.21 16 9 Si 0.89 21.33 29.54 -169.99 -5.02 16.30 16 10 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 S 0.06 1.25 20.99 -107.50 -2.26 -1.01 16 14 C 0.31 5.55 7.66 -90.44 -0.69 4.86 16 15 N -0.53 -8.86 6.78 -13.00 -0.09 -8.95 16 16 C 0.22 3.18 10.90 -16.75 -0.18 2.99 16 17 C -0.32 -4.03 5.82 -105.02 -0.61 -4.64 16 18 C 0.24 3.07 6.70 -82.02 -0.55 2.52 16 19 N -0.52 -8.32 10.31 -9.40 -0.10 -8.42 16 20 C -0.08 -0.63 5.94 -28.26 -0.17 -0.80 16 21 C -0.11 -0.64 5.89 -26.68 -0.16 -0.80 16 22 C -0.16 -1.11 6.19 -27.24 -0.17 -1.28 16 23 C 0.42 4.55 6.89 -30.38 -0.21 4.34 16 24 O -0.46 -6.27 17.37 5.53 0.10 -6.18 16 25 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 26 H 0.06 1.09 5.61 -51.93 -0.29 0.80 16 27 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.04 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 31 H 0.18 2.12 7.82 -52.49 -0.41 1.71 16 32 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 323.79 15.07 4.88 4.88 Total: -1.00 -31.24 323.79 -9.60 -40.85 By element: Atomic # 1 Polarization: 1.28 SS G_CDS: -4.87 Total: -3.60 kcal Atomic # 6 Polarization: -5.70 SS G_CDS: -2.98 Total: -8.67 kcal Atomic # 7 Polarization: -43.12 SS G_CDS: 0.55 Total: -42.57 kcal Atomic # 8 Polarization: -6.27 SS G_CDS: 0.10 Total: -6.18 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: 1.25 SS G_CDS: -2.26 Total: -1.01 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.24 -9.60 -40.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000629195699.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.666 kcal (2) G-P(sol) polarization free energy of solvation -31.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds