Wall clock time and date at job start Tue Mar 31 2020 06:13:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86803 * 120.00388 * 2 1 4 4 H 1.48501 * 109.47194 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46598 * 299.99589 * 3 2 1 6 6 H 1.48501 * 109.47282 * 59.99042 * 3 2 1 7 7 C 1.38811 * 119.99986 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00012 * 180.02562 * 7 2 1 9 9 S 1.76202 * 119.99613 * 0.02562 * 7 2 1 10 10 C 1.76201 * 99.99637 * 185.62865 * 9 7 2 11 11 C 1.39106 * 120.19207 * 9.09163 * 10 9 7 12 12 C 1.37916 * 120.05470 * 179.97438 * 11 10 9 13 13 C 1.38653 * 120.43473 * 0.02562 * 12 11 10 14 14 C 1.37807 * 120.38314 * 0.02562 * 13 12 11 15 15 C 1.39679 * 119.93999 * 359.97438 * 14 13 12 16 16 C 1.47428 * 120.21859 * 180.02562 * 15 14 13 17 17 O 1.21608 * 120.00187 * 216.78017 * 16 15 14 18 18 N 1.34782 * 119.99748 * 36.78147 * 16 15 14 19 19 C 1.46900 * 120.49330 * 185.39860 * 18 16 15 20 20 C 1.52903 * 108.81207 * 233.79915 * 19 18 16 21 21 C 1.53224 * 108.88545 * 308.44897 * 20 19 18 22 22 C 1.53095 * 109.20191 * 57.56682 * 21 20 19 23 23 N 1.36893 * 120.49351 * 5.67562 * 18 16 15 24 24 H 0.97000 * 119.99721 * 0.02562 * 1 2 3 25 25 H 1.08005 * 119.97577 * 359.97351 * 11 10 9 26 26 H 1.08001 * 119.78450 * 180.28314 * 12 11 10 27 27 H 1.07998 * 119.80945 * 179.97438 * 13 12 11 28 28 H 1.08002 * 120.03405 * 179.97438 * 14 13 12 29 29 H 1.09000 * 109.61594 * 353.57392 * 19 18 16 30 30 H 1.09000 * 109.61559 * 114.11576 * 19 18 16 31 31 H 1.09007 * 109.64954 * 188.56767 * 20 19 18 32 32 H 1.09000 * 109.55377 * 68.27827 * 20 19 18 33 33 H 1.09006 * 109.51267 * 297.65606 * 21 20 19 34 34 H 1.08997 * 109.52055 * 177.49325 * 21 20 19 35 35 H 1.08998 * 109.47903 * 180.28481 * 22 21 20 36 36 H 1.08997 * 109.47182 * 60.26926 * 22 21 20 37 37 H 1.00905 * 110.99621 * 247.21011 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.7096 1.3463 0.0006 5 1 1.8909 2.3963 -1.2126 6 1 1.8908 2.3966 1.2124 7 6 2.0096 -1.2021 0.0005 8 1 3.0895 -1.2021 0.0010 9 16 1.1285 -2.7280 0.0005 10 6 2.4709 -3.8564 0.1715 11 6 3.7500 -3.3851 0.4488 12 6 4.7986 -4.2708 0.5825 13 6 4.5887 -5.6342 0.4419 14 6 3.3292 -6.1207 0.1662 15 6 2.2558 -5.2377 0.0275 16 6 0.9057 -5.7516 -0.2669 17 8 0.1659 -5.1296 -1.0050 18 7 0.4912 -6.9107 0.2820 19 6 -0.8037 -7.4929 -0.0949 20 6 -1.6175 -7.7484 1.1742 21 6 -0.7593 -8.5465 2.1614 22 6 0.5260 -7.7682 2.4547 23 7 1.2682 -7.5599 1.2032 24 1 -0.4850 0.8401 -0.0004 25 1 3.9221 -2.3246 0.5593 26 1 5.7890 -3.9005 0.8023 27 1 5.4172 -6.3187 0.5483 28 1 3.1721 -7.1836 0.0574 29 1 -1.3428 -6.7995 -0.7403 30 1 -0.6427 -8.4350 -0.6190 31 1 -2.5138 -8.3173 0.9265 32 1 -1.9014 -6.7967 1.6233 33 1 -0.5080 -9.5137 1.7261 34 1 -1.3139 -8.6962 3.0877 35 1 1.1424 -8.3344 3.1529 36 1 0.2741 -6.8025 2.8928 37 1 1.6099 -8.4352 0.8354 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701410663.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:04 Heat of formation + Delta-G solvation = 24.091673 kcal Electronic energy + Delta-G solvation = -21086.267184 eV Core-core repulsion = 17955.649782 eV Total energy + Delta-G solvation = -3130.617402 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.21621 -38.07935 -37.00998 -33.30229 -32.69691 -31.89032 -30.35784 -30.17284 -26.35692 -25.77029 -24.18520 -22.82908 -21.81993 -20.96055 -19.68899 -18.04055 -17.10224 -16.39561 -16.08626 -15.58855 -15.10528 -14.68364 -14.55053 -14.31166 -14.05389 -13.63137 -13.45539 -13.16024 -12.94069 -12.83693 -12.19963 -11.92380 -11.59102 -11.52112 -11.21313 -11.17326 -11.02692 -10.90845 -10.80244 -10.27197 -9.74593 -9.68955 -9.39969 -8.89605 -8.64674 -8.59212 -8.26434 -8.10057 -6.43582 -6.42238 -4.10293 1.73223 2.19203 2.87903 3.14483 3.15192 3.23859 3.41850 3.48965 4.09211 4.30583 4.56374 4.62842 4.76617 4.78188 4.99751 5.15110 5.21455 5.30294 5.40521 5.56432 5.62522 5.63080 5.69487 5.75677 5.87661 5.91934 6.07802 6.11084 6.31671 6.52223 6.75956 6.82551 7.01283 7.07662 7.16665 7.26736 7.51567 7.71961 8.08753 8.22113 8.75858 9.04731 10.63309 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.019412 B = 0.005192 C = 0.004406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.049299 B = 5391.471249 C = 6353.208384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.079 3.921 3 Si 0.922 3.078 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.568 4.568 8 H 0.093 0.907 9 S 0.110 5.890 10 C -0.047 4.047 11 C -0.159 4.159 12 C -0.078 4.078 13 C -0.190 4.190 14 C -0.031 4.031 15 C -0.152 4.152 16 C 0.590 3.410 17 O -0.509 6.509 18 N -0.469 5.469 19 C 0.085 3.915 20 C -0.137 4.137 21 C -0.155 4.155 22 C 0.037 3.963 23 N -0.431 5.431 24 H 0.273 0.727 25 H 0.136 0.864 26 H 0.109 0.891 27 H 0.109 0.891 28 H 0.116 0.884 29 H 0.102 0.898 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.062 0.938 34 H 0.072 0.928 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.337 0.663 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.160 -16.831 4.170 17.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.131 4.131 3 Si 0.747 3.253 4 H -0.191 1.191 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.715 4.715 8 H 0.111 0.889 9 S 0.370 5.630 10 C -0.165 4.165 11 C -0.185 4.185 12 C -0.100 4.100 13 C -0.214 4.214 14 C -0.051 4.051 15 C -0.166 4.166 16 C 0.381 3.619 17 O -0.381 6.381 18 N -0.296 5.296 19 C -0.039 4.039 20 C -0.176 4.176 21 C -0.194 4.194 22 C -0.092 4.092 23 N -0.156 5.156 24 H 0.083 0.917 25 H 0.154 0.846 26 H 0.127 0.873 27 H 0.127 0.873 28 H 0.133 0.867 29 H 0.120 0.880 30 H 0.080 0.920 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.106 0.894 36 H 0.102 0.898 37 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 0.427 -15.639 3.795 16.099 hybrid contribution 1.276 0.228 0.160 1.306 sum 1.703 -15.411 3.956 16.001 Atomic orbital electron populations 1.69992 1.06210 1.28130 1.45165 1.25106 0.95038 0.99616 0.93358 0.86053 0.79924 0.81195 0.78095 1.19125 1.20262 1.20315 1.23670 0.96470 0.92268 1.59063 0.88948 1.84130 1.04339 0.95140 1.79349 1.22915 1.00402 0.96555 0.96672 1.21337 0.91865 1.00674 1.04581 1.21054 0.97916 0.93480 0.97503 1.20667 0.96653 0.95133 1.08964 1.20849 0.91672 0.97791 0.94804 1.18912 0.92594 0.92261 1.12805 1.18263 0.87073 0.77811 0.78736 1.90842 1.55898 1.54816 1.36562 1.47471 1.17184 1.23624 1.41284 1.21919 0.85652 0.99114 0.97231 1.21903 0.98301 1.01250 0.96104 1.22186 0.98153 0.98802 1.00289 1.22595 0.93561 1.01405 0.91686 1.61769 1.28933 1.26438 0.98426 0.91729 0.84643 0.87268 0.87292 0.86654 0.88013 0.92035 0.90834 0.90890 0.91921 0.90965 0.89364 0.89785 0.84303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.23 13.22 55.49 0.73 -24.49 16 2 C 0.08 2.21 5.49 -17.46 -0.10 2.11 16 3 Si 0.92 21.03 29.55 -169.99 -5.02 16.00 16 4 H -0.27 -5.92 7.11 56.52 0.40 -5.51 16 5 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 6 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.57 -15.98 8.97 30.94 0.28 -15.71 16 8 H 0.09 2.48 5.06 -52.49 -0.27 2.21 16 9 S 0.11 3.01 19.25 -107.50 -2.07 0.94 16 10 C -0.05 -1.11 6.12 -38.39 -0.24 -1.34 16 11 C -0.16 -3.44 9.20 -39.38 -0.36 -3.80 16 12 C -0.08 -1.39 10.03 -39.55 -0.40 -1.79 16 13 C -0.19 -3.06 10.02 -39.59 -0.40 -3.46 16 14 C -0.03 -0.52 8.64 -39.20 -0.34 -0.86 16 15 C -0.15 -3.14 5.57 -104.75 -0.58 -3.72 16 16 C 0.59 11.91 7.09 -12.52 -0.09 11.83 16 17 O -0.51 -12.09 14.38 5.27 0.08 -12.01 16 18 N -0.47 -7.14 3.21 -61.15 -0.20 -7.34 16 19 C 0.09 1.09 6.55 -3.87 -0.03 1.06 16 20 C -0.14 -1.45 6.17 -26.67 -0.16 -1.62 16 21 C -0.15 -1.35 6.09 -26.57 -0.16 -1.51 16 22 C 0.04 0.38 6.76 -3.73 -0.03 0.35 16 23 N -0.43 -5.22 4.36 -10.28 -0.04 -5.27 16 24 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 25 H 0.14 3.05 5.11 -52.48 -0.27 2.78 16 26 H 0.11 1.62 8.06 -52.49 -0.42 1.19 16 27 H 0.11 1.41 8.06 -52.49 -0.42 0.98 16 28 H 0.12 1.59 6.54 -52.49 -0.34 1.25 16 29 H 0.10 1.52 6.98 -51.93 -0.36 1.16 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.64 8.14 -51.92 -0.42 0.22 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.34 3.16 8.69 -181.16 -1.57 1.59 16 LS Contribution 315.80 15.07 4.76 4.76 Total: -1.00 -32.64 315.80 -10.12 -42.75 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -5.75 Total: 3.10 kcal Atomic # 6 Polarization: -15.85 SS G_CDS: -2.60 Total: -18.44 kcal Atomic # 7 Polarization: -37.59 SS G_CDS: 0.49 Total: -37.10 kcal Atomic # 8 Polarization: -12.09 SS G_CDS: 0.08 Total: -12.01 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 16 Polarization: 3.01 SS G_CDS: -2.07 Total: 0.94 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -32.64 -10.12 -42.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701410663.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.844 kcal (2) G-P(sol) polarization free energy of solvation -32.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds