Wall clock time and date at job start Tue Mar 31 2020 06:13:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86803 * 120.00388 * 2 1 4 4 H 1.48501 * 109.47194 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46598 * 299.99589 * 3 2 1 6 6 H 1.48501 * 109.47282 * 59.99042 * 3 2 1 7 7 C 1.38811 * 119.99986 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00012 * 180.02562 * 7 2 1 9 9 S 1.76202 * 119.99613 * 0.02562 * 7 2 1 10 10 C 1.76201 * 99.99637 * 185.62865 * 9 7 2 11 11 C 1.39106 * 120.19207 * 9.09163 * 10 9 7 12 12 C 1.37916 * 120.05470 * 179.97438 * 11 10 9 13 13 C 1.38653 * 120.43473 * 0.02562 * 12 11 10 14 14 C 1.37807 * 120.38314 * 0.02562 * 13 12 11 15 15 C 1.39679 * 119.93999 * 359.97438 * 14 13 12 16 16 C 1.47428 * 120.21859 * 180.02562 * 15 14 13 17 17 O 1.21608 * 120.00187 * 216.78017 * 16 15 14 18 18 N 1.34782 * 119.99748 * 36.78147 * 16 15 14 19 19 C 1.46900 * 120.49330 * 185.39860 * 18 16 15 20 20 C 1.52903 * 108.81207 * 233.79915 * 19 18 16 21 21 C 1.53224 * 108.88545 * 308.44897 * 20 19 18 22 22 C 1.53095 * 109.20191 * 57.56682 * 21 20 19 23 23 N 1.36893 * 120.49351 * 5.67562 * 18 16 15 24 24 H 0.97000 * 119.99721 * 0.02562 * 1 2 3 25 25 H 1.08005 * 119.97577 * 359.97351 * 11 10 9 26 26 H 1.08001 * 119.78450 * 180.28314 * 12 11 10 27 27 H 1.07998 * 119.80945 * 179.97438 * 13 12 11 28 28 H 1.08002 * 120.03405 * 179.97438 * 14 13 12 29 29 H 1.09000 * 109.61594 * 353.57392 * 19 18 16 30 30 H 1.09000 * 109.61559 * 114.11576 * 19 18 16 31 31 H 1.09007 * 109.64954 * 188.56767 * 20 19 18 32 32 H 1.09000 * 109.55377 * 68.27827 * 20 19 18 33 33 H 1.09006 * 109.51267 * 297.65606 * 21 20 19 34 34 H 1.08997 * 109.52055 * 177.49325 * 21 20 19 35 35 H 1.08998 * 109.47903 * 180.28481 * 22 21 20 36 36 H 1.08997 * 109.47182 * 60.26926 * 22 21 20 37 37 H 1.00905 * 110.99621 * 247.21011 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.7096 1.3463 0.0006 5 1 1.8909 2.3963 -1.2126 6 1 1.8908 2.3966 1.2124 7 6 2.0096 -1.2021 0.0005 8 1 3.0895 -1.2021 0.0010 9 16 1.1285 -2.7280 0.0005 10 6 2.4709 -3.8564 0.1715 11 6 3.7500 -3.3851 0.4488 12 6 4.7986 -4.2708 0.5825 13 6 4.5887 -5.6342 0.4419 14 6 3.3292 -6.1207 0.1662 15 6 2.2558 -5.2377 0.0275 16 6 0.9057 -5.7516 -0.2669 17 8 0.1659 -5.1296 -1.0050 18 7 0.4912 -6.9107 0.2820 19 6 -0.8037 -7.4929 -0.0949 20 6 -1.6175 -7.7484 1.1742 21 6 -0.7593 -8.5465 2.1614 22 6 0.5260 -7.7682 2.4547 23 7 1.2682 -7.5599 1.2032 24 1 -0.4850 0.8401 -0.0004 25 1 3.9221 -2.3246 0.5593 26 1 5.7890 -3.9005 0.8023 27 1 5.4172 -6.3187 0.5483 28 1 3.1721 -7.1836 0.0574 29 1 -1.3428 -6.7995 -0.7403 30 1 -0.6427 -8.4350 -0.6190 31 1 -2.5138 -8.3173 0.9265 32 1 -1.9014 -6.7967 1.6233 33 1 -0.5080 -9.5137 1.7261 34 1 -1.3139 -8.6962 3.0877 35 1 1.1424 -8.3344 3.1529 36 1 0.2741 -6.8025 2.8928 37 1 1.6099 -8.4352 0.8354 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701410663.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:03 Heat of formation + Delta-G solvation = 2.702041 kcal Electronic energy + Delta-G solvation = -21087.194708 eV Core-core repulsion = 17955.649782 eV Total energy + Delta-G solvation = -3131.544926 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.50911 -39.44966 -38.49442 -34.77450 -34.36564 -32.93162 -31.85727 -31.72411 -27.85910 -27.50434 -25.20050 -24.16069 -23.34612 -22.08947 -20.98449 -19.82597 -18.62962 -17.74300 -17.43669 -17.07625 -16.78488 -16.08125 -15.90737 -15.46347 -15.27976 -14.99202 -14.63206 -14.59029 -14.45558 -14.41381 -13.57237 -13.31326 -13.17553 -12.99163 -12.82246 -12.58934 -12.37896 -12.05812 -11.99455 -11.67543 -11.43227 -11.41721 -11.23189 -10.45860 -10.23197 -9.92906 -9.77375 -9.55482 -8.47730 -8.42808 -6.23770 0.19306 0.65006 1.26931 1.36038 1.46492 1.60731 1.66709 1.96203 2.20804 2.87524 3.08504 3.22623 3.28924 3.77554 3.90368 3.97274 4.06038 4.19480 4.25839 4.34558 4.51212 4.67569 4.69328 4.77272 4.81001 4.90122 4.94443 5.02688 5.09108 5.22685 5.26859 5.41813 5.59409 5.61125 5.72213 5.76626 6.08324 6.11914 6.24621 6.80641 6.94457 7.37371 8.60952 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.019412 B = 0.005192 C = 0.004406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.049299 B = 5391.471249 C = 6353.208384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.020 3.980 3 Si 0.999 3.001 4 H -0.256 1.256 5 H -0.271 1.271 6 H -0.268 1.268 7 C -0.575 4.575 8 H 0.096 0.904 9 S -0.003 6.003 10 C -0.068 4.068 11 C -0.178 4.178 12 C -0.074 4.074 13 C -0.159 4.159 14 C -0.024 4.024 15 C -0.157 4.157 16 C 0.578 3.422 17 O -0.560 6.560 18 N -0.460 5.460 19 C 0.081 3.919 20 C -0.135 4.135 21 C -0.145 4.145 22 C 0.037 3.963 23 N -0.440 5.440 24 H 0.275 0.725 25 H 0.116 0.884 26 H 0.148 0.852 27 H 0.164 0.836 28 H 0.155 0.845 29 H 0.068 0.932 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.040 0.960 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.123 0.877 36 H 0.049 0.951 37 H 0.361 0.639 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.378 -20.427 5.275 21.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.185 4.185 3 Si 0.820 3.180 4 H -0.180 1.180 5 H -0.196 1.196 6 H -0.193 1.193 7 C -0.722 4.722 8 H 0.114 0.886 9 S 0.253 5.747 10 C -0.185 4.185 11 C -0.203 4.203 12 C -0.094 4.094 13 C -0.182 4.182 14 C -0.044 4.044 15 C -0.169 4.169 16 C 0.369 3.631 17 O -0.437 6.437 18 N -0.283 5.283 19 C -0.042 4.042 20 C -0.174 4.174 21 C -0.184 4.184 22 C -0.092 4.092 23 N -0.168 5.168 24 H 0.085 0.915 25 H 0.134 0.866 26 H 0.165 0.835 27 H 0.181 0.819 28 H 0.173 0.827 29 H 0.087 0.913 30 H 0.115 0.885 31 H 0.116 0.884 32 H 0.059 0.941 33 H 0.109 0.891 34 H 0.106 0.894 35 H 0.141 0.859 36 H 0.068 0.932 37 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 3.704 -19.362 4.934 20.322 hybrid contribution 0.432 0.968 -0.128 1.067 sum 4.136 -18.395 4.807 19.457 Atomic orbital electron populations 1.70146 1.08076 1.29091 1.47002 1.26207 0.95964 1.03545 0.92814 0.84907 0.78742 0.75944 0.78429 1.17954 1.19612 1.19296 1.23881 0.96549 0.92547 1.59235 0.88632 1.84262 1.08714 0.97740 1.83982 1.22791 0.99356 0.96816 0.99562 1.21364 0.92411 1.00723 1.05815 1.21481 0.98246 0.93854 0.95840 1.21331 0.97591 0.95059 1.04189 1.21318 0.90764 0.99128 0.93221 1.19291 0.94289 0.91669 1.11682 1.18406 0.86953 0.78948 0.78785 1.90819 1.57062 1.56604 1.39187 1.47281 1.18001 1.22321 1.40653 1.22114 0.84517 0.99371 0.98245 1.21906 0.99452 1.00579 0.95427 1.22140 0.96794 0.99030 1.00403 1.22648 0.95061 1.00498 0.91021 1.61695 1.29095 1.27651 0.98348 0.91547 0.86624 0.83477 0.81874 0.82704 0.91319 0.88528 0.88396 0.94106 0.89139 0.89436 0.85878 0.93231 0.81667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.71 13.22 21.65 0.29 -56.43 16 2 C 0.02 1.16 5.49 84.87 0.47 1.63 16 3 Si 1.00 44.82 29.55 68.60 2.03 46.85 16 4 H -0.26 -10.83 7.11 99.48 0.71 -10.13 16 5 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 6 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 7 C -0.58 -34.56 8.97 67.96 0.61 -33.95 16 8 H 0.10 5.44 5.06 -2.92 -0.01 5.42 16 9 S 0.00 -0.15 19.25 -56.49 -1.09 -1.24 16 10 C -0.07 -3.36 6.12 23.04 0.14 -3.22 16 11 C -0.18 -7.75 9.20 22.40 0.21 -7.55 16 12 C -0.07 -2.36 10.03 22.29 0.22 -2.14 16 13 C -0.16 -4.23 10.02 22.27 0.22 -4.01 16 14 C -0.02 -0.73 8.64 22.52 0.19 -0.53 16 15 C -0.16 -6.50 5.57 -19.95 -0.11 -6.61 16 16 C 0.58 24.19 7.09 86.66 0.61 24.80 16 17 O -0.56 -28.82 14.38 -4.06 -0.06 -28.88 16 18 N -0.46 -13.70 3.21 -465.64 -1.49 -15.20 16 19 C 0.08 2.03 6.55 86.27 0.57 2.59 16 20 C -0.14 -2.72 6.17 30.64 0.19 -2.53 16 21 C -0.14 -2.01 6.09 30.70 0.19 -1.83 16 22 C 0.04 0.65 6.76 86.32 0.58 1.23 16 23 N -0.44 -9.32 4.36 -186.42 -0.81 -10.13 16 24 H 0.28 15.80 8.31 -92.71 -0.77 15.03 16 25 H 0.12 5.43 5.11 -2.91 -0.01 5.41 16 26 H 0.15 3.61 8.06 -2.91 -0.02 3.59 16 27 H 0.16 2.79 8.06 -2.91 -0.02 2.76 16 28 H 0.16 3.40 6.54 -2.91 -0.02 3.38 16 29 H 0.07 2.20 6.98 -2.39 -0.02 2.18 16 30 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.10 1.51 8.14 -2.38 -0.02 1.49 16 32 H 0.04 1.07 8.14 -2.39 -0.02 1.06 16 33 H 0.09 0.85 8.14 -2.38 -0.02 0.83 16 34 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.36 4.94 8.69 -210.38 -1.83 3.11 16 Total: -1.00 -81.71 315.80 2.23 -79.48 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: -0.73 Total: 17.65 kcal Atomic # 6 Polarization: -36.20 SS G_CDS: 4.09 Total: -32.10 kcal Atomic # 7 Polarization: -79.73 SS G_CDS: -2.02 Total: -81.75 kcal Atomic # 8 Polarization: -28.82 SS G_CDS: -0.06 Total: -28.88 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Atomic # 16 Polarization: -0.15 SS G_CDS: -1.09 Total: -1.24 kcal Total: -81.71 2.23 -79.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701410663.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.182 kcal (2) G-P(sol) polarization free energy of solvation -81.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds