Wall clock time and date at job start Tue Mar 31 2020 06:12:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86795 * 119.99959 * 2 1 4 4 H 1.48499 * 109.47264 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47375 * 300.00329 * 3 2 1 6 6 H 1.48506 * 109.47301 * 60.00327 * 3 2 1 7 7 C 1.38663 * 120.00220 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99731 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99751 * 359.97438 * 7 2 1 10 10 C 1.35750 * 117.00075 * 174.94575 * 9 7 2 11 11 C 1.38874 * 120.06878 * 185.26035 * 10 9 7 12 12 C 1.38110 * 119.92772 * 179.76614 * 11 10 9 13 13 C 1.38304 * 120.06594 * 0.48719 * 12 11 10 14 14 C 1.50698 * 119.92742 * 179.74699 * 13 12 11 15 15 N 1.46508 * 109.46930 * 270.02005 * 14 13 12 16 16 C 1.34776 * 119.99798 * 179.97438 * 15 14 13 17 17 S 1.71196 * 120.00161 * 0.02562 * 16 15 14 18 18 N 1.34774 * 119.99873 * 180.02562 * 16 15 14 19 19 C 1.46501 * 120.00053 * 180.02562 * 18 16 15 20 20 C 1.52997 * 117.49971 * 223.61906 * 19 18 16 21 21 C 1.52996 * 60.00358 * 252.51285 * 20 19 18 22 22 C 1.38297 * 120.14055 * 359.76875 * 13 12 11 23 23 C 1.38101 * 120.07230 * 359.97438 * 22 13 12 24 24 H 0.96996 * 120.00178 * 359.97438 * 1 2 3 25 25 H 1.07996 * 120.03745 * 0.02562 * 11 10 9 26 26 H 1.07996 * 119.96227 * 180.23396 * 12 11 10 27 27 H 1.09003 * 109.47622 * 30.01908 * 14 13 12 28 28 H 1.09004 * 109.47221 * 150.02459 * 14 13 12 29 29 H 0.96994 * 120.00085 * 0.02562 * 15 14 13 30 30 H 0.97007 * 119.99977 * 359.97438 * 18 16 15 31 31 H 1.08999 * 115.54956 * 9.33433 * 19 18 16 32 32 H 1.08994 * 117.49992 * 0.02562 * 20 19 18 33 33 H 1.08999 * 117.49752 * 145.02304 * 20 19 18 34 34 H 1.08999 * 117.49831 * 252.51604 * 21 20 19 35 35 H 1.09000 * 117.52237 * 107.48246 * 21 20 19 36 36 H 1.07999 * 119.96698 * 179.97438 * 22 13 12 37 37 H 1.07992 * 120.03608 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.7095 1.3464 -0.0006 5 1 1.8908 2.3964 -1.2124 6 1 1.8908 2.3964 1.2126 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3348 -2.3685 -0.0005 10 6 2.0700 -3.5046 -0.1076 11 6 1.4365 -4.7349 -0.2242 12 6 2.1874 -5.8885 -0.3378 13 6 3.5686 -5.8202 -0.3255 14 6 4.3848 -7.0815 -0.4440 15 7 4.6432 -7.6233 0.8925 16 6 5.3594 -8.7563 1.0334 17 16 5.9677 -9.5620 -0.3492 18 7 5.5966 -9.2550 2.2628 19 6 6.3756 -10.4863 2.4161 20 6 5.8623 -11.5274 3.4127 21 6 7.1057 -10.6996 3.7436 22 6 4.2024 -4.5970 -0.2043 23 6 3.4573 -3.4394 -0.0956 24 1 -0.4850 0.8400 0.0004 25 1 0.3579 -4.7892 -0.2301 26 1 1.6953 -6.8452 -0.4323 27 1 3.8358 -7.8156 -1.0337 28 1 5.3321 -6.8566 -0.9342 29 1 4.2983 -7.1670 1.6758 30 1 5.2523 -8.7982 3.0463 31 1 6.8602 -10.8517 1.5107 32 1 4.9450 -11.2966 3.9541 33 1 6.0091 -12.5783 3.1631 34 1 8.0705 -11.2059 3.7115 35 1 7.0070 -9.9238 4.5028 36 1 5.2812 -4.5470 -0.1945 37 1 3.9527 -2.4845 -0.0005 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000727659247.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:38 Heat of formation + Delta-G solvation = 39.264015 kcal Electronic energy + Delta-G solvation = -19501.329667 eV Core-core repulsion = 16371.370188 eV Total energy + Delta-G solvation = -3129.959480 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.63534 -39.11481 -37.61836 -36.38460 -33.62910 -32.42700 -30.39597 -29.94361 -26.10917 -24.98482 -23.73498 -22.82426 -22.46465 -22.16232 -20.82947 -18.74916 -18.16491 -17.50396 -17.07815 -15.75451 -15.48292 -15.24126 -14.72534 -14.63538 -14.44797 -14.22347 -13.75676 -13.61015 -13.17967 -12.97564 -12.88700 -12.35128 -12.01673 -11.81234 -11.48586 -11.20673 -11.03853 -10.98985 -10.92829 -10.87945 -10.72105 -10.53515 -9.51656 -9.05174 -9.00626 -8.39765 -7.87117 -7.55727 -7.34533 -6.61270 -4.20121 1.32015 1.72857 2.02719 2.05675 2.54031 3.02570 3.04866 3.10353 3.45992 3.46990 3.83564 4.30792 4.39719 4.49465 4.59597 4.92208 4.97743 5.10551 5.18168 5.32165 5.35546 5.47631 5.55606 5.62695 5.70053 5.74164 5.98046 6.02080 6.24400 6.39465 6.48933 6.69042 6.70840 6.86052 7.03300 7.15177 7.21536 7.25751 7.60502 7.83239 8.83953 9.50654 10.56003 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.030255 B = 0.002600 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.252862 B =10766.465410 C =10955.079375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.041 3.959 3 Si 0.943 3.057 4 H -0.266 1.266 5 H -0.274 1.274 6 H -0.275 1.275 7 C -0.394 4.394 8 H 0.095 0.905 9 O -0.170 6.170 10 C 0.163 3.837 11 C -0.196 4.196 12 C -0.051 4.051 13 C -0.225 4.225 14 C 0.183 3.817 15 N -0.669 5.669 16 C 0.567 3.433 17 S -0.656 6.656 18 N -0.666 5.666 19 C 0.080 3.920 20 C -0.188 4.188 21 C -0.187 4.187 22 C -0.047 4.047 23 C -0.238 4.238 24 H 0.272 0.728 25 H 0.119 0.881 26 H 0.113 0.887 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.398 0.602 30 H 0.397 0.603 31 H 0.167 0.833 32 H 0.096 0.904 33 H 0.107 0.893 34 H 0.108 0.892 35 H 0.096 0.904 36 H 0.109 0.891 37 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.743 -15.004 7.601 19.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C -0.165 4.165 3 Si 0.767 3.233 4 H -0.190 1.190 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.470 4.470 8 H 0.112 0.888 9 O -0.073 6.073 10 C 0.107 3.893 11 C -0.215 4.215 12 C -0.070 4.070 13 C -0.227 4.227 14 C 0.062 3.938 15 N -0.296 5.296 16 C 0.206 3.794 17 S -0.531 6.531 18 N -0.296 5.296 19 C -0.026 4.026 20 C -0.227 4.227 21 C -0.226 4.226 22 C -0.066 4.066 23 C -0.257 4.257 24 H 0.082 0.918 25 H 0.137 0.863 26 H 0.131 0.869 27 H 0.106 0.894 28 H 0.105 0.895 29 H 0.235 0.765 30 H 0.233 0.767 31 H 0.185 0.815 32 H 0.114 0.886 33 H 0.126 0.874 34 H 0.127 0.873 35 H 0.114 0.886 36 H 0.127 0.873 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 9.706 -15.290 6.554 19.260 hybrid contribution -0.243 1.769 1.579 2.383 sum 9.463 -13.521 8.132 18.398 Atomic orbital electron populations 1.70040 1.06048 1.27932 1.45041 1.25348 0.95884 0.99025 0.96205 0.85612 0.79159 0.80063 0.78417 1.18991 1.19951 1.20021 1.21427 0.91938 0.80637 1.53019 0.88774 1.83977 1.34612 1.11623 1.77044 1.19458 0.90330 0.88057 0.91420 1.20221 0.99747 0.90240 1.11318 1.20557 0.92710 0.96941 0.96786 1.19186 0.93556 0.93308 1.16625 1.20431 1.00228 0.92856 0.80303 1.45673 1.49716 1.21919 1.12263 1.22199 0.82449 0.84456 0.90319 1.93393 1.67508 1.66061 1.26139 1.44240 1.53779 1.26315 1.05241 1.22238 0.98084 0.85191 0.97136 1.23433 0.98109 0.98055 1.03055 1.23420 0.97563 1.03244 0.98366 1.20666 0.98447 0.91651 0.95818 1.21167 0.93761 0.99001 1.11797 0.91804 0.86272 0.86854 0.89438 0.89474 0.76478 0.76650 0.81547 0.88595 0.87417 0.87336 0.88589 0.87289 0.85319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.16 13.67 55.48 0.76 -23.40 16 2 C 0.04 1.07 5.49 -17.51 -0.10 0.98 16 3 Si 0.94 19.63 29.55 -169.99 -5.02 14.61 16 4 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 5 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 6 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 7 C -0.39 -10.48 9.49 30.89 0.29 -10.18 16 8 H 0.09 2.31 5.20 -52.49 -0.27 2.03 16 9 O -0.17 -4.61 9.76 0.05 0.00 -4.61 16 10 C 0.16 3.65 6.65 -39.11 -0.26 3.39 16 11 C -0.20 -3.79 9.99 -39.39 -0.39 -4.18 16 12 C -0.05 -0.81 9.69 -39.60 -0.38 -1.20 16 13 C -0.22 -3.37 5.25 -104.58 -0.55 -3.92 16 14 C 0.18 2.38 5.25 -5.19 -0.03 2.35 16 15 N -0.67 -7.35 5.55 -63.21 -0.35 -7.71 16 16 C 0.57 6.71 7.98 -86.92 -0.69 6.02 16 17 S -0.66 -10.47 27.11 -107.50 -2.91 -13.39 16 18 N -0.67 -5.75 5.57 -55.52 -0.31 -6.06 16 19 C 0.08 0.66 6.27 -67.93 -0.43 0.23 16 20 C -0.19 -1.16 10.46 -26.73 -0.28 -1.44 16 21 C -0.19 -1.08 10.46 -26.73 -0.28 -1.36 16 22 C -0.05 -0.77 9.69 -39.61 -0.38 -1.15 16 23 C -0.24 -4.73 9.17 -39.39 -0.36 -5.10 16 24 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 25 H 0.12 2.24 8.06 -52.49 -0.42 1.82 16 26 H 0.11 1.53 8.06 -52.49 -0.42 1.10 16 27 H 0.09 1.19 7.93 -51.93 -0.41 0.78 16 28 H 0.09 1.20 7.93 -51.93 -0.41 0.78 16 29 H 0.40 3.69 8.48 -40.82 -0.35 3.35 16 30 H 0.40 2.40 8.84 -40.82 -0.36 2.04 16 31 H 0.17 1.74 6.43 -51.93 -0.33 1.40 16 32 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 37 H 0.13 2.60 5.64 -52.49 -0.30 2.30 16 LS Contribution 333.88 15.07 5.03 5.03 Total: -1.00 -31.34 333.88 -11.18 -42.51 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -4.53 Total: 8.56 kcal Atomic # 6 Polarization: -11.72 SS G_CDS: -3.84 Total: -15.56 kcal Atomic # 7 Polarization: -37.26 SS G_CDS: 0.10 Total: -37.17 kcal Atomic # 8 Polarization: -4.61 SS G_CDS: 0.00 Total: -4.61 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -5.02 Total: 14.61 kcal Atomic # 16 Polarization: -10.47 SS G_CDS: -2.91 Total: -13.39 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.34 -11.18 -42.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000727659247.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.779 kcal (2) G-P(sol) polarization free energy of solvation -31.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds