Wall clock time and date at job start Tue Mar 31 2020 06:12:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86795 * 119.99959 * 2 1 4 4 H 1.48499 * 109.47264 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47375 * 300.00329 * 3 2 1 6 6 H 1.48506 * 109.47301 * 60.00327 * 3 2 1 7 7 C 1.38663 * 120.00220 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99731 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99751 * 359.97438 * 7 2 1 10 10 C 1.35750 * 117.00075 * 174.94575 * 9 7 2 11 11 C 1.38874 * 120.06878 * 185.26035 * 10 9 7 12 12 C 1.38110 * 119.92772 * 179.76614 * 11 10 9 13 13 C 1.38304 * 120.06594 * 0.48719 * 12 11 10 14 14 C 1.50698 * 119.92742 * 179.74699 * 13 12 11 15 15 N 1.46508 * 109.46930 * 270.02005 * 14 13 12 16 16 C 1.34776 * 119.99798 * 179.97438 * 15 14 13 17 17 S 1.71196 * 120.00161 * 0.02562 * 16 15 14 18 18 N 1.34774 * 119.99873 * 180.02562 * 16 15 14 19 19 C 1.46501 * 120.00053 * 180.02562 * 18 16 15 20 20 C 1.52997 * 117.49971 * 223.61906 * 19 18 16 21 21 C 1.52996 * 60.00358 * 252.51285 * 20 19 18 22 22 C 1.38297 * 120.14055 * 359.76875 * 13 12 11 23 23 C 1.38101 * 120.07230 * 359.97438 * 22 13 12 24 24 H 0.96996 * 120.00178 * 359.97438 * 1 2 3 25 25 H 1.07996 * 120.03745 * 0.02562 * 11 10 9 26 26 H 1.07996 * 119.96227 * 180.23396 * 12 11 10 27 27 H 1.09003 * 109.47622 * 30.01908 * 14 13 12 28 28 H 1.09004 * 109.47221 * 150.02459 * 14 13 12 29 29 H 0.96994 * 120.00085 * 0.02562 * 15 14 13 30 30 H 0.97007 * 119.99977 * 359.97438 * 18 16 15 31 31 H 1.08999 * 115.54956 * 9.33433 * 19 18 16 32 32 H 1.08994 * 117.49992 * 0.02562 * 20 19 18 33 33 H 1.08999 * 117.49752 * 145.02304 * 20 19 18 34 34 H 1.08999 * 117.49831 * 252.51604 * 21 20 19 35 35 H 1.09000 * 117.52237 * 107.48246 * 21 20 19 36 36 H 1.07999 * 119.96698 * 179.97438 * 22 13 12 37 37 H 1.07992 * 120.03608 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.7095 1.3464 -0.0006 5 1 1.8908 2.3964 -1.2124 6 1 1.8908 2.3964 1.2126 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3348 -2.3685 -0.0005 10 6 2.0700 -3.5046 -0.1076 11 6 1.4365 -4.7349 -0.2242 12 6 2.1874 -5.8885 -0.3378 13 6 3.5686 -5.8202 -0.3255 14 6 4.3848 -7.0815 -0.4440 15 7 4.6432 -7.6233 0.8925 16 6 5.3594 -8.7563 1.0334 17 16 5.9677 -9.5620 -0.3492 18 7 5.5966 -9.2550 2.2628 19 6 6.3756 -10.4863 2.4161 20 6 5.8623 -11.5274 3.4127 21 6 7.1057 -10.6996 3.7436 22 6 4.2024 -4.5970 -0.2043 23 6 3.4573 -3.4394 -0.0956 24 1 -0.4850 0.8400 0.0004 25 1 0.3579 -4.7892 -0.2301 26 1 1.6953 -6.8452 -0.4323 27 1 3.8358 -7.8156 -1.0337 28 1 5.3321 -6.8566 -0.9342 29 1 4.2983 -7.1670 1.6758 30 1 5.2523 -8.7982 3.0463 31 1 6.8602 -10.8517 1.5107 32 1 4.9450 -11.2966 3.9541 33 1 6.0091 -12.5783 3.1631 34 1 8.0705 -11.2059 3.7115 35 1 7.0070 -9.9238 4.5028 36 1 5.2812 -4.5470 -0.1945 37 1 3.9527 -2.4845 -0.0005 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000727659247.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:37 Heat of formation + Delta-G solvation = 19.832185 kcal Electronic energy + Delta-G solvation = -19502.172295 eV Core-core repulsion = 16371.370188 eV Total energy + Delta-G solvation = -3130.802107 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.98233 -40.21718 -38.82236 -37.57780 -34.68248 -34.15867 -31.88249 -31.29838 -27.75348 -26.45555 -24.72926 -23.69107 -23.28863 -23.22729 -22.23435 -19.95722 -19.66020 -18.86046 -18.29647 -16.68288 -16.61460 -16.51460 -16.23832 -15.78010 -15.66069 -15.53073 -15.29360 -14.99153 -14.45518 -14.24265 -13.79688 -13.69234 -13.42357 -13.06363 -12.58486 -12.44685 -12.40968 -12.37009 -12.22313 -12.10598 -11.69319 -11.50418 -11.22047 -10.85255 -9.87865 -9.82706 -9.11425 -9.02542 -8.63568 -8.51095 -6.19310 0.35410 0.41348 0.54007 0.92295 1.35118 1.41226 1.52763 1.57775 2.14938 2.52937 2.84254 2.92670 3.13501 3.45180 3.73089 3.75912 3.98818 4.00460 4.08858 4.13570 4.41150 4.52464 4.60027 4.68263 4.75403 4.77004 5.00098 5.00540 5.11208 5.11505 5.19475 5.22233 5.45727 5.59323 5.65665 5.69123 5.88955 5.98713 6.11353 6.37531 6.93946 7.72225 8.71755 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.030255 B = 0.002600 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.252862 B =10766.465410 C =10955.079375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.021 4.021 3 Si 1.018 2.982 4 H -0.250 1.250 5 H -0.270 1.270 6 H -0.268 1.268 7 C -0.413 4.413 8 H 0.105 0.895 9 O -0.227 6.227 10 C 0.126 3.874 11 C -0.205 4.205 12 C -0.039 4.039 13 C -0.189 4.189 14 C 0.194 3.806 15 N -0.659 5.659 16 C 0.587 3.413 17 S -0.736 6.736 18 N -0.642 5.642 19 C 0.049 3.951 20 C -0.176 4.176 21 C -0.167 4.167 22 C -0.041 4.041 23 C -0.244 4.244 24 H 0.273 0.727 25 H 0.116 0.884 26 H 0.148 0.852 27 H 0.089 0.911 28 H 0.087 0.913 29 H 0.412 0.588 30 H 0.415 0.585 31 H 0.143 0.857 32 H 0.105 0.895 33 H 0.113 0.887 34 H 0.117 0.883 35 H 0.110 0.890 36 H 0.140 0.860 37 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.888 -16.770 9.098 22.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.219 4.219 3 Si 0.837 3.163 4 H -0.174 1.174 5 H -0.195 1.195 6 H -0.193 1.193 7 C -0.489 4.489 8 H 0.122 0.878 9 O -0.133 6.133 10 C 0.074 3.926 11 C -0.224 4.224 12 C -0.058 4.058 13 C -0.190 4.190 14 C 0.072 3.928 15 N -0.287 5.287 16 C 0.222 3.778 17 S -0.613 6.613 18 N -0.271 5.271 19 C -0.057 4.057 20 C -0.215 4.215 21 C -0.205 4.205 22 C -0.060 4.060 23 C -0.264 4.264 24 H 0.083 0.917 25 H 0.134 0.866 26 H 0.166 0.834 27 H 0.107 0.893 28 H 0.105 0.895 29 H 0.251 0.749 30 H 0.254 0.746 31 H 0.160 0.840 32 H 0.124 0.876 33 H 0.131 0.869 34 H 0.135 0.865 35 H 0.128 0.872 36 H 0.158 0.842 37 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 11.890 -17.124 8.109 22.368 hybrid contribution -0.751 1.865 1.186 2.334 sum 11.138 -15.259 9.295 21.055 Atomic orbital electron populations 1.70177 1.08033 1.28870 1.48465 1.26582 0.96818 1.02770 0.95752 0.84536 0.78329 0.74896 0.78533 1.17362 1.19524 1.19342 1.21875 0.92589 0.81272 1.53174 0.87812 1.83950 1.36119 1.12699 1.80548 1.20019 0.91646 0.87964 0.92934 1.20452 1.00148 0.90389 1.11450 1.20898 0.93015 0.97064 0.94815 1.19437 0.93388 0.93821 1.12372 1.20227 0.99775 0.91565 0.81240 1.45246 1.49689 1.21734 1.12033 1.21606 0.81992 0.84056 0.90124 1.93616 1.70531 1.68201 1.28913 1.44204 1.52198 1.26015 1.04671 1.22250 1.00005 0.85857 0.97613 1.23507 0.98782 0.97883 1.01282 1.23515 0.97848 1.02948 0.96234 1.20955 0.99860 0.90723 0.94427 1.21247 0.92980 1.00109 1.12021 0.91749 0.86628 0.83420 0.89270 0.89482 0.74857 0.74558 0.83983 0.87642 0.86866 0.86451 0.87187 0.84229 0.86158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.65 13.67 21.62 0.30 -54.35 16 2 C -0.02 -1.16 5.49 84.84 0.47 -0.69 16 3 Si 1.02 41.27 29.55 68.60 2.03 43.30 16 4 H -0.25 -9.32 7.11 99.48 0.71 -8.62 16 5 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 6 H -0.27 -10.45 7.11 99.48 0.71 -9.74 16 7 C -0.41 -22.97 9.49 67.92 0.64 -22.32 16 8 H 0.10 5.26 5.20 -2.91 -0.02 5.24 16 9 O -0.23 -12.99 9.76 -22.72 -0.22 -13.21 16 10 C 0.13 5.77 6.65 22.58 0.15 5.92 16 11 C -0.21 -7.87 9.99 22.39 0.22 -7.65 16 12 C -0.04 -1.14 9.69 22.25 0.22 -0.92 16 13 C -0.19 -4.99 5.25 -19.84 -0.10 -5.09 16 14 C 0.19 4.32 5.25 85.63 0.45 4.77 16 15 N -0.66 -11.95 5.55 -353.89 -1.97 -13.92 16 16 C 0.59 12.20 7.98 179.06 1.43 13.63 16 17 S -0.74 -22.70 27.11 -56.49 -1.53 -24.23 16 18 N -0.64 -8.97 5.57 -329.57 -1.84 -10.80 16 19 C 0.05 0.68 6.27 44.99 0.28 0.96 16 20 C -0.18 -1.60 10.46 30.59 0.32 -1.28 16 21 C -0.17 -1.35 10.46 30.59 0.32 -1.03 16 22 C -0.04 -1.23 9.69 22.25 0.22 -1.01 16 23 C -0.24 -9.62 9.17 22.39 0.21 -9.42 16 24 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 25 H 0.12 4.44 8.06 -2.91 -0.02 4.42 16 26 H 0.15 3.34 8.06 -2.91 -0.02 3.32 16 27 H 0.09 2.09 7.93 -2.39 -0.02 2.07 16 28 H 0.09 2.08 7.93 -2.39 -0.02 2.06 16 29 H 0.41 5.75 8.48 -92.71 -0.79 4.96 16 30 H 0.41 3.23 8.84 -92.70 -0.82 2.41 16 31 H 0.14 2.83 6.43 -2.39 -0.02 2.82 16 32 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.14 3.39 8.06 -2.91 -0.02 3.37 16 37 H 0.12 4.89 5.64 -2.91 -0.02 4.88 16 Total: -1.00 -74.00 333.88 1.10 -72.91 By element: Atomic # 1 Polarization: 24.93 SS G_CDS: -0.49 Total: 24.44 kcal Atomic # 6 Polarization: -28.95 SS G_CDS: 4.82 Total: -24.13 kcal Atomic # 7 Polarization: -75.57 SS G_CDS: -3.51 Total: -79.07 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: -0.22 Total: -13.21 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 2.03 Total: 43.30 kcal Atomic # 16 Polarization: -22.70 SS G_CDS: -1.53 Total: -24.23 kcal Total: -74.00 1.10 -72.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000727659247.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.738 kcal (2) G-P(sol) polarization free energy of solvation -74.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds