Wall clock time and date at job start Tue Mar 31 2020 06:39:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39735 * 119.58685 * 219.76691 * 3 2 1 5 5 C 1.37954 * 119.20638 * 180.02562 * 4 3 2 6 6 C 1.40270 * 118.39641 * 359.97177 * 5 4 3 7 7 C 1.47625 * 120.44434 * 180.02562 * 6 5 4 8 8 O 1.21585 * 119.99705 * 359.97276 * 7 6 5 9 9 N 1.34769 * 120.00080 * 179.97438 * 7 6 5 10 10 C 1.39113 * 120.00222 * 175.70740 * 9 7 6 11 11 C 1.39509 * 119.84296 * 215.04582 * 10 9 7 12 12 C 1.36355 * 120.16877 * 179.76089 * 11 10 9 13 13 C 1.40878 * 119.83133 * 0.53480 * 12 11 10 14 14 C 1.41130 * 120.16378 * 179.69669 * 13 12 11 15 15 H 1.07999 * 120.00514 * 214.79720 * 14 13 12 16 16 C 1.39914 * 119.99767 * 34.79665 * 14 13 12 17 17 N 1.30863 * 119.99969 * 355.58256 * 16 14 13 18 18 Si 1.86804 * 119.99771 * 175.58504 * 16 14 13 19 19 H 1.48502 * 109.47209 * 90.00043 * 18 16 14 20 20 H 1.48507 * 109.46935 * 209.99877 * 18 16 14 21 21 H 1.48496 * 109.47329 * 329.99859 * 18 16 14 22 22 C 1.40884 * 119.67849 * 359.72082 * 13 12 11 23 23 C 1.36365 * 119.82889 * 359.97438 * 22 13 12 24 24 C 1.39687 * 119.11538 * 0.02562 * 6 5 4 25 25 N 1.31473 * 120.70516 * 0.02562 * 24 6 5 26 26 H 4.51269 * 14.17589 * 359.97438 * 4 2 1 27 27 H 1.08001 * 120.39725 * 0.04247 * 4 3 2 28 28 H 1.07994 * 120.80459 * 179.97438 * 5 4 3 29 29 H 0.97004 * 120.00332 * 355.71155 * 9 7 6 30 30 H 1.08005 * 119.91582 * 0.02562 * 11 10 9 31 31 H 1.08002 * 120.08292 * 180.23122 * 12 11 10 32 32 H 0.97011 * 119.99754 * 179.97438 * 17 16 14 33 33 H 1.07994 * 120.08522 * 179.97438 * 22 13 12 34 34 H 1.07993 * 119.91732 * 179.97438 * 23 22 13 35 35 H 1.07995 * 119.64765 * 180.02562 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.2955 0.9350 0.7773 5 6 4.6750 0.9289 0.7710 6 6 5.3343 -0.0227 -0.0210 7 6 6.8093 -0.0701 -0.0610 8 8 7.4608 0.7194 0.5950 9 7 7.4335 -0.9885 -0.8248 10 6 8.8203 -0.9768 -0.9328 11 6 9.4257 -1.3308 -2.1388 12 6 10.7844 -1.3170 -2.2536 13 6 11.5775 -0.9547 -1.1470 14 6 12.9845 -0.9442 -1.2561 15 1 13.5939 -1.2253 -0.4100 16 6 13.5899 -0.5694 -2.4605 17 7 12.8531 -0.3123 -3.5110 18 14 15.4501 -0.4361 -2.5689 19 1 16.0172 -1.7459 -2.9789 20 1 15.8147 0.5969 -3.5717 21 1 15.9971 -0.0533 -1.2426 22 6 10.9592 -0.6035 0.0692 23 6 9.5991 -0.6160 0.1672 24 6 4.5766 -0.9249 -0.7715 25 7 3.2628 -0.8870 -0.7401 26 1 -1.0501 -0.0003 -0.0009 27 1 2.7549 1.6531 1.3760 28 1 5.2339 1.6396 1.3617 29 1 6.9157 -1.6577 -1.2992 30 1 8.8166 -1.6126 -2.9850 31 1 11.2514 -1.5877 -3.1890 32 1 13.2729 -0.0521 -4.3460 33 1 11.5608 -0.3252 0.9218 34 1 9.1237 -0.3475 1.0989 35 1 5.0753 -1.6614 -1.3840 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000728804135.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:25 Heat of formation + Delta-G solvation = 83.216561 kcal Electronic energy + Delta-G solvation = -20695.531909 eV Core-core repulsion = 17432.034404 eV Total energy + Delta-G solvation = -3263.497506 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.095 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.78599 -39.31166 -37.27087 -34.62549 -34.22532 -33.03024 -32.74407 -31.05819 -29.62155 -28.84398 -25.86495 -24.41999 -23.81007 -21.83954 -20.97593 -20.07094 -19.60280 -17.90787 -17.34490 -17.00283 -16.28722 -15.86463 -15.19838 -15.04862 -14.97854 -14.19017 -14.04136 -13.88626 -13.40620 -13.08613 -12.86556 -12.61830 -12.17938 -11.75992 -11.57944 -11.41388 -11.21195 -11.18911 -11.04952 -10.77254 -10.23793 -10.19185 -9.90405 -9.53828 -9.50724 -9.22721 -9.10471 -8.95407 -7.59674 -6.92368 -6.66135 -4.38374 0.11271 0.94331 2.26829 2.27898 2.66442 3.05086 3.06627 3.08466 3.13324 3.32694 3.49619 3.57322 3.83411 3.95192 4.29638 4.55444 4.66048 4.69413 4.83235 4.90946 5.23171 5.41771 5.60865 5.77981 5.83477 6.14842 6.22070 6.39189 6.66423 6.85281 7.01872 7.07091 7.14264 7.24342 7.49298 7.59132 7.66584 7.79323 8.01491 8.16515 8.26601 8.53653 8.63060 8.88294 8.94485 10.24669 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.050457 B = 0.002655 C = 0.002584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.797799 B =10543.521253 C =10833.162705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.147 4.147 3 C 0.237 3.763 4 C -0.151 4.151 5 C -0.017 4.017 6 C -0.167 4.167 7 C 0.543 3.457 8 O -0.523 6.523 9 N -0.639 5.639 10 C -0.002 4.002 11 C -0.117 4.117 12 C -0.142 4.142 13 C 0.101 3.899 14 C -0.458 4.458 15 H 0.077 0.923 16 C 0.069 3.931 17 N -0.809 5.809 18 Si 0.916 3.084 19 H -0.270 1.270 20 H -0.278 1.278 21 H -0.263 1.263 22 C -0.206 4.206 23 C -0.082 4.082 24 C 0.137 3.863 25 N -0.471 5.471 26 H 0.230 0.770 27 H 0.146 0.854 28 H 0.155 0.845 29 H 0.395 0.605 30 H 0.093 0.907 31 H 0.133 0.867 32 H 0.278 0.722 33 H 0.097 0.903 34 H 0.108 0.892 35 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.501 -0.112 3.764 17.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.148 4.148 3 C 0.102 3.898 4 C -0.171 4.171 5 C -0.044 4.044 6 C -0.172 4.172 7 C 0.329 3.671 8 O -0.400 6.400 9 N -0.281 5.281 10 C -0.095 4.095 11 C -0.137 4.137 12 C -0.162 4.162 13 C 0.099 3.901 14 C -0.489 4.489 15 H 0.095 0.905 16 C -0.147 4.147 17 N -0.436 5.436 18 Si 0.741 3.259 19 H -0.195 1.195 20 H -0.203 1.203 21 H -0.187 1.187 22 C -0.226 4.226 23 C -0.102 4.102 24 C -0.023 4.023 25 N -0.180 5.180 26 H 0.247 0.753 27 H 0.164 0.836 28 H 0.173 0.827 29 H 0.230 0.770 30 H 0.111 0.889 31 H 0.151 0.849 32 H 0.089 0.911 33 H 0.115 0.885 34 H 0.126 0.874 35 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -17.441 -0.066 3.470 17.783 hybrid contribution 0.826 0.455 -0.009 0.943 sum -16.614 0.389 3.462 16.976 Atomic orbital electron populations 1.24947 0.95622 0.97686 0.97425 1.19302 0.91038 1.02165 1.02309 1.16722 0.88139 0.91887 0.93076 1.22017 0.94420 1.00000 1.00625 1.21708 0.93453 0.95322 0.93877 1.21306 0.95273 0.99435 1.01169 1.17918 0.86113 0.81520 0.81505 1.90783 1.66177 1.40524 1.42541 1.42864 1.06934 1.30635 1.47709 1.17227 0.79787 1.16825 0.95626 1.20319 0.95760 1.03856 0.93785 1.21198 0.91215 1.02855 1.00926 1.17750 0.93668 0.87820 0.90878 1.19517 0.91812 1.40093 0.97484 0.90518 1.25903 1.00733 0.93121 0.94897 1.69757 1.37184 1.35098 1.01600 0.86180 0.81993 0.78671 0.79050 1.19487 1.20274 1.18691 1.20809 0.93234 1.09351 0.99231 1.20403 0.93651 0.99814 0.96349 1.22974 0.88651 0.95851 0.94834 1.67721 1.09718 1.21743 1.18772 0.75299 0.83646 0.82725 0.76996 0.88936 0.84944 0.91058 0.88486 0.87412 0.81692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 19.25 29.55 0.57 -0.46 16 2 C -0.15 -1.55 13.43 -38.84 -0.52 -2.07 16 3 C 0.24 2.80 6.59 -84.90 -0.56 2.24 16 4 C -0.15 -1.55 9.77 -39.13 -0.38 -1.93 16 5 C -0.02 -0.21 9.70 -38.92 -0.38 -0.58 16 6 C -0.17 -2.24 5.89 -104.76 -0.62 -2.86 16 7 C 0.54 9.33 7.60 -12.43 -0.09 9.24 16 8 O -0.52 -10.90 13.82 5.29 0.07 -10.83 16 9 N -0.64 -10.90 5.25 -10.66 -0.06 -10.96 16 10 C 0.00 -0.05 6.30 -83.60 -0.53 -0.58 16 11 C -0.12 -2.60 9.90 -39.79 -0.39 -3.00 16 12 C -0.14 -3.58 8.61 -39.26 -0.34 -3.92 16 13 C 0.10 2.68 5.55 -106.80 -0.59 2.08 16 14 C -0.46 -12.06 9.02 -37.86 -0.34 -12.40 16 15 H 0.08 1.93 7.85 -52.49 -0.41 1.52 16 16 C 0.07 1.72 5.42 -17.34 -0.09 1.63 16 17 N -0.81 -20.79 10.60 55.55 0.59 -20.20 16 18 Si 0.92 18.78 29.56 -169.99 -5.03 13.76 16 19 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 20 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 21 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 22 C -0.21 -5.14 9.74 -39.26 -0.38 -5.52 16 23 C -0.08 -1.93 8.61 -39.78 -0.34 -2.27 16 24 C 0.14 1.64 10.70 -17.16 -0.18 1.46 16 25 N -0.47 -6.08 10.26 -10.78 -0.11 -6.19 16 26 H 0.23 0.68 7.80 -54.09 -0.42 0.26 16 27 H 0.15 1.07 8.06 -52.49 -0.42 0.65 16 28 H 0.16 1.73 7.73 -52.49 -0.41 1.32 16 29 H 0.40 5.18 6.87 -40.82 -0.28 4.90 16 30 H 0.09 1.78 8.06 -52.48 -0.42 1.36 16 31 H 0.13 3.45 6.13 -52.49 -0.32 3.13 16 32 H 0.28 6.55 8.30 -40.82 -0.34 6.21 16 33 H 0.10 2.29 8.06 -52.49 -0.42 1.87 16 34 H 0.11 2.48 6.22 -52.49 -0.33 2.16 16 35 H 0.17 1.55 6.41 -52.49 -0.34 1.21 16 LS Contribution 318.40 15.07 4.80 4.80 Total: -1.00 -31.32 318.40 -7.82 -39.14 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -2.91 Total: 9.42 kcal Atomic # 6 Polarization: -13.77 SS G_CDS: -5.18 Total: -18.95 kcal Atomic # 7 Polarization: -37.77 SS G_CDS: 0.42 Total: -37.34 kcal Atomic # 8 Polarization: -10.90 SS G_CDS: 0.07 Total: -10.83 kcal Atomic # 14 Polarization: 18.78 SS G_CDS: -5.03 Total: 13.76 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -31.32 -7.82 -39.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728804135.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.354 kcal (2) G-P(sol) polarization free energy of solvation -31.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds