Wall clock time and date at job start Tue Mar 31 2020 06:39:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39735 * 119.58685 * 219.76691 * 3 2 1 5 5 C 1.37954 * 119.20638 * 180.02562 * 4 3 2 6 6 C 1.40270 * 118.39641 * 359.97177 * 5 4 3 7 7 C 1.47625 * 120.44434 * 180.02562 * 6 5 4 8 8 O 1.21585 * 119.99705 * 359.97276 * 7 6 5 9 9 N 1.34769 * 120.00080 * 179.97438 * 7 6 5 10 10 C 1.39113 * 120.00222 * 175.70740 * 9 7 6 11 11 C 1.39509 * 119.84296 * 215.04582 * 10 9 7 12 12 C 1.36355 * 120.16877 * 179.76089 * 11 10 9 13 13 C 1.40878 * 119.83133 * 0.53480 * 12 11 10 14 14 C 1.41130 * 120.16378 * 179.69669 * 13 12 11 15 15 H 1.07999 * 120.00514 * 214.79720 * 14 13 12 16 16 C 1.39914 * 119.99767 * 34.79665 * 14 13 12 17 17 N 1.30863 * 119.99969 * 355.58256 * 16 14 13 18 18 Si 1.86804 * 119.99771 * 175.58504 * 16 14 13 19 19 H 1.48502 * 109.47209 * 90.00043 * 18 16 14 20 20 H 1.48507 * 109.46935 * 209.99877 * 18 16 14 21 21 H 1.48496 * 109.47329 * 329.99859 * 18 16 14 22 22 C 1.40884 * 119.67849 * 359.72082 * 13 12 11 23 23 C 1.36365 * 119.82889 * 359.97438 * 22 13 12 24 24 C 1.39687 * 119.11538 * 0.02562 * 6 5 4 25 25 N 1.31473 * 120.70516 * 0.02562 * 24 6 5 26 26 H 4.51269 * 14.17589 * 359.97438 * 4 2 1 27 27 H 1.08001 * 120.39725 * 0.04247 * 4 3 2 28 28 H 1.07994 * 120.80459 * 179.97438 * 5 4 3 29 29 H 0.97004 * 120.00332 * 355.71155 * 9 7 6 30 30 H 1.08005 * 119.91582 * 0.02562 * 11 10 9 31 31 H 1.08002 * 120.08292 * 180.23122 * 12 11 10 32 32 H 0.97011 * 119.99754 * 179.97438 * 17 16 14 33 33 H 1.07994 * 120.08522 * 179.97438 * 22 13 12 34 34 H 1.07993 * 119.91732 * 179.97438 * 23 22 13 35 35 H 1.07995 * 119.64765 * 180.02562 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.2955 0.9350 0.7773 5 6 4.6750 0.9289 0.7710 6 6 5.3343 -0.0227 -0.0210 7 6 6.8093 -0.0701 -0.0610 8 8 7.4608 0.7194 0.5950 9 7 7.4335 -0.9885 -0.8248 10 6 8.8203 -0.9768 -0.9328 11 6 9.4257 -1.3308 -2.1388 12 6 10.7844 -1.3170 -2.2536 13 6 11.5775 -0.9547 -1.1470 14 6 12.9845 -0.9442 -1.2561 15 1 13.5939 -1.2253 -0.4100 16 6 13.5899 -0.5694 -2.4605 17 7 12.8531 -0.3123 -3.5110 18 14 15.4501 -0.4361 -2.5689 19 1 16.0172 -1.7459 -2.9789 20 1 15.8147 0.5969 -3.5717 21 1 15.9971 -0.0533 -1.2426 22 6 10.9592 -0.6035 0.0692 23 6 9.5991 -0.6160 0.1672 24 6 4.5766 -0.9249 -0.7715 25 7 3.2628 -0.8870 -0.7401 26 1 -1.0501 -0.0003 -0.0009 27 1 2.7549 1.6531 1.3760 28 1 5.2339 1.6396 1.3617 29 1 6.9157 -1.6577 -1.2992 30 1 8.8166 -1.6126 -2.9850 31 1 11.2514 -1.5877 -3.1890 32 1 13.2729 -0.0521 -4.3460 33 1 11.5608 -0.3252 0.9218 34 1 9.1237 -0.3475 1.0989 35 1 5.0753 -1.6614 -1.3840 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000728804135.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:25 Heat of formation + Delta-G solvation = 64.760324 kcal Electronic energy + Delta-G solvation = -20696.332232 eV Core-core repulsion = 17432.034404 eV Total energy + Delta-G solvation = -3264.297828 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.095 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.90452 -40.64594 -39.00598 -36.28056 -35.14164 -34.63937 -33.67448 -32.08956 -31.46638 -30.55770 -27.31741 -25.79573 -24.73611 -23.49395 -22.70468 -21.57562 -20.40810 -19.37109 -19.08225 -18.27657 -17.33895 -17.02310 -16.77837 -16.36455 -16.17780 -15.71118 -15.27520 -15.09848 -14.76607 -14.51190 -14.31460 -14.01401 -13.75821 -13.53914 -13.24595 -12.89717 -12.79779 -12.50028 -12.32645 -11.93192 -11.80493 -11.42094 -11.28766 -11.11516 -11.06263 -10.74230 -10.58265 -9.99072 -9.48081 -8.75966 -8.51520 -6.34000 -0.82134 0.06623 0.78776 1.13418 1.39729 1.40077 1.51937 1.57480 1.61869 2.10249 2.18949 2.24673 2.78750 2.85901 2.90850 3.46396 3.58561 3.67411 3.72994 3.92840 4.02300 4.38714 4.47462 4.50766 4.67625 4.89799 4.93194 5.02059 5.10288 5.13729 5.31533 5.38151 5.41428 5.68826 5.87890 5.99027 6.11783 6.37332 6.44166 6.56976 6.62557 6.67190 6.95750 6.97158 7.22465 8.41011 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.050457 B = 0.002655 C = 0.002584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.797799 B =10543.521253 C =10833.162705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.218 4.218 3 C 0.237 3.763 4 C -0.144 4.144 5 C -0.017 4.017 6 C -0.186 4.186 7 C 0.549 3.451 8 O -0.564 6.564 9 N -0.633 5.633 10 C 0.016 3.984 11 C -0.115 4.115 12 C -0.160 4.160 13 C 0.069 3.931 14 C -0.495 4.495 15 H 0.073 0.927 16 C 0.027 3.973 17 N -0.839 5.839 18 Si 0.988 3.012 19 H -0.259 1.259 20 H -0.270 1.270 21 H -0.263 1.263 22 C -0.221 4.221 23 C -0.094 4.094 24 C 0.146 3.854 25 N -0.494 5.494 26 H 0.273 0.727 27 H 0.176 0.824 28 H 0.157 0.843 29 H 0.417 0.583 30 H 0.127 0.873 31 H 0.120 0.880 32 H 0.285 0.715 33 H 0.097 0.903 34 H 0.110 0.890 35 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.276 -0.084 3.515 20.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.219 4.219 3 C 0.103 3.897 4 C -0.164 4.164 5 C -0.043 4.043 6 C -0.192 4.192 7 C 0.338 3.662 8 O -0.444 6.444 9 N -0.278 5.278 10 C -0.077 4.077 11 C -0.135 4.135 12 C -0.180 4.180 13 C 0.066 3.934 14 C -0.526 4.526 15 H 0.092 0.908 16 C -0.185 4.185 17 N -0.467 5.467 18 Si 0.809 3.191 19 H -0.184 1.184 20 H -0.194 1.194 21 H -0.187 1.187 22 C -0.241 4.241 23 C -0.114 4.114 24 C -0.014 4.014 25 N -0.202 5.202 26 H 0.289 0.711 27 H 0.193 0.807 28 H 0.175 0.825 29 H 0.255 0.745 30 H 0.145 0.855 31 H 0.138 0.862 32 H 0.096 0.904 33 H 0.115 0.885 34 H 0.128 0.872 35 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -20.269 -0.063 3.216 20.523 hybrid contribution 1.287 0.461 0.133 1.373 sum -18.982 0.397 3.349 19.280 Atomic orbital electron populations 1.26002 0.96293 0.94090 0.93707 1.19576 0.91468 1.05336 1.05486 1.17145 0.89339 0.91211 0.92050 1.22257 0.93596 1.00132 1.00407 1.21852 0.94291 0.94808 0.93349 1.20967 0.92667 1.01709 1.03809 1.18414 0.87582 0.80312 0.79885 1.90762 1.67510 1.42009 1.44071 1.42738 1.05208 1.31640 1.48212 1.17265 0.81903 1.13954 0.94614 1.20571 0.95067 1.02840 0.95002 1.21184 0.92544 1.04017 1.00259 1.18064 0.94395 0.89108 0.91814 1.19731 0.92201 1.42224 0.98441 0.90848 1.26751 1.05493 0.92188 0.94084 1.69821 1.39085 1.35636 1.02151 0.85101 0.75895 0.79090 0.78971 1.18401 1.19439 1.18680 1.20934 0.94111 1.09952 0.99093 1.20530 0.93355 1.00288 0.97233 1.23235 0.88538 0.95460 0.94135 1.67804 1.09806 1.22759 1.19864 0.71080 0.80696 0.82512 0.74467 0.85517 0.86215 0.90428 0.88459 0.87234 0.79577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.89 19.25 74.32 1.43 0.54 16 2 C -0.22 -3.99 13.43 30.02 0.40 -3.59 16 3 C 0.24 5.19 6.59 40.59 0.27 5.45 16 4 C -0.14 -2.69 9.77 22.56 0.22 -2.47 16 5 C -0.02 -0.38 9.70 22.70 0.22 -0.16 16 6 C -0.19 -4.83 5.89 -19.96 -0.12 -4.94 16 7 C 0.55 18.59 7.60 86.72 0.66 19.25 16 8 O -0.56 -23.70 13.82 -3.98 -0.06 -23.75 16 9 N -0.63 -20.90 5.25 -305.90 -1.61 -22.51 16 10 C 0.02 0.69 6.30 38.60 0.24 0.93 16 11 C -0.11 -5.07 9.90 22.14 0.22 -4.85 16 12 C -0.16 -8.29 8.61 22.48 0.19 -8.09 16 13 C 0.07 3.77 5.55 -21.28 -0.12 3.65 16 14 C -0.50 -27.13 9.02 23.39 0.21 -26.92 16 15 H 0.07 3.89 7.85 -2.91 -0.02 3.86 16 16 C 0.03 1.38 5.42 85.24 0.46 1.84 16 17 N -0.84 -44.13 10.60 21.82 0.23 -43.90 16 18 Si 0.99 39.04 29.56 68.60 2.03 41.07 16 19 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 20 H -0.27 -10.21 7.11 99.48 0.71 -9.50 16 21 H -0.26 -10.25 7.11 99.48 0.71 -9.55 16 22 C -0.22 -11.46 9.74 22.48 0.22 -11.24 16 23 C -0.09 -4.51 8.61 22.14 0.19 -4.32 16 24 C 0.15 3.27 10.70 85.10 0.91 4.18 16 25 N -0.49 -11.94 10.26 -188.01 -1.93 -13.87 16 26 H 0.27 0.03 7.80 -4.41 -0.03 0.00 16 27 H 0.18 2.10 8.06 -2.91 -0.02 2.08 16 28 H 0.16 3.41 7.73 -2.91 -0.02 3.39 16 29 H 0.42 10.07 6.87 -92.71 -0.64 9.44 16 30 H 0.13 4.64 8.06 -2.91 -0.02 4.62 16 31 H 0.12 6.46 6.13 -2.91 -0.02 6.44 16 32 H 0.29 13.61 8.30 -92.70 -0.77 12.84 16 33 H 0.10 4.85 8.06 -2.91 -0.02 4.83 16 34 H 0.11 5.17 6.22 -2.91 -0.02 5.15 16 35 H 0.19 3.09 6.41 -2.91 -0.02 3.07 16 Total: -1.00 -70.87 318.40 4.79 -66.07 By element: Atomic # 1 Polarization: 27.12 SS G_CDS: 0.51 Total: 27.63 kcal Atomic # 6 Polarization: -36.36 SS G_CDS: 5.62 Total: -30.74 kcal Atomic # 7 Polarization: -76.98 SS G_CDS: -3.30 Total: -80.28 kcal Atomic # 8 Polarization: -23.70 SS G_CDS: -0.06 Total: -23.75 kcal Atomic # 14 Polarization: 39.04 SS G_CDS: 2.03 Total: 41.07 kcal Total: -70.87 4.79 -66.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728804135.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.832 kcal (2) G-P(sol) polarization free energy of solvation -70.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds