Wall clock time and date at job start Tue Mar 31 2020 06:39:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 C 1.40003 * 120.45809 * 210.93798 * 3 2 1 5 5 C 1.38197 * 118.37445 * 179.77151 * 4 3 2 6 6 C 1.39531 * 119.20036 * 0.47326 * 5 4 3 7 7 C 1.47919 * 119.57257 * 179.79494 * 6 5 4 8 8 O 1.21561 * 119.99725 * 359.72637 * 7 6 5 9 9 N 1.34771 * 120.00784 * 179.72512 * 7 6 5 10 10 C 1.39088 * 120.00997 * 185.09899 * 9 7 6 11 11 C 1.39521 * 119.83352 * 34.47826 * 10 9 7 12 12 C 1.36356 * 120.16785 * 180.27655 * 11 10 9 13 13 C 1.40885 * 119.82547 * 359.53294 * 12 11 10 14 14 C 1.41132 * 120.15854 * 180.22908 * 13 12 11 15 15 H 1.07996 * 119.99831 * 25.60985 * 14 13 12 16 16 C 1.39915 * 119.99699 * 205.62136 * 14 13 12 17 17 N 1.30866 * 120.00348 * 16.83071 * 16 14 13 18 18 Si 1.86805 * 119.99609 * 196.83202 * 16 14 13 19 19 H 1.48496 * 109.47150 * 60.00170 * 18 16 14 20 20 H 1.48501 * 109.46985 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47158 * 299.99642 * 18 16 14 22 22 C 1.40888 * 119.68288 * 0.46795 * 13 12 11 23 23 C 1.36350 * 119.82694 * 359.75605 * 22 13 12 24 24 N 1.32845 * 120.85465 * 359.51325 * 6 5 4 25 25 C 1.31288 * 121.78915 * 0.25789 * 24 6 5 26 26 H 4.52951 * 13.94614 * 359.97438 * 4 2 1 27 27 H 1.08009 * 120.81165 * 0.02562 * 4 3 2 28 28 H 1.07998 * 120.40225 * 180.24262 * 5 4 3 29 29 H 0.97012 * 119.99319 * 5.09495 * 9 7 6 30 30 H 1.08003 * 119.91754 * 0.02562 * 11 10 9 31 31 H 1.07996 * 120.08732 * 179.74487 * 12 11 10 32 32 H 0.97001 * 119.99653 * 180.02562 * 17 16 14 33 33 H 1.07999 * 120.08527 * 179.73802 * 22 13 12 34 34 H 1.07996 * 119.91643 * 179.97438 * 23 22 13 35 35 H 1.08001 * 119.65153 * 180.02562 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3153 1.0361 0.6204 5 6 4.6963 0.9911 0.5988 6 6 5.3328 -0.0711 -0.0443 7 6 6.8107 -0.1250 -0.0764 8 8 7.4626 0.7551 0.4510 9 7 7.4346 -1.1498 -0.6903 10 6 8.8199 -1.2575 -0.6299 11 6 9.4979 -0.8546 0.5211 12 6 10.8564 -0.9519 0.5856 13 6 11.5746 -1.4700 -0.5101 14 6 12.9805 -1.5784 -0.4491 15 1 13.4738 -1.6713 0.5071 16 6 13.7349 -1.5652 -1.6273 17 7 13.2021 -1.1303 -2.7407 18 14 15.5028 -2.1685 -1.6111 19 1 15.5372 -3.5887 -1.1790 20 1 16.0778 -2.0526 -2.9754 21 1 16.2985 -1.3441 -0.6664 22 6 10.8832 -1.8748 -1.6690 23 6 9.5249 -1.7672 -1.7207 24 7 4.6288 -1.0374 -0.6233 25 6 3.3159 -1.0333 -0.6205 26 1 -1.0500 -0.0006 -0.0009 27 1 2.7957 1.8480 1.1077 28 1 5.2760 1.7706 1.0706 29 1 6.9172 -1.8125 -1.1744 30 1 8.9456 -0.4609 1.3616 31 1 11.3802 -0.6359 1.4756 32 1 13.7251 -1.1215 -3.5576 33 1 11.4276 -2.2689 -2.5144 34 1 8.9935 -2.0766 -2.6084 35 1 2.7781 -1.8369 -1.1015 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000728805513.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:50 Heat of formation + Delta-G solvation = 78.139688 kcal Electronic energy + Delta-G solvation = -20680.291424 eV Core-core repulsion = 17416.573768 eV Total energy + Delta-G solvation = -3263.717655 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.095 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.72282 -39.15964 -37.19604 -34.67275 -34.49082 -33.00851 -32.40121 -30.94569 -29.57487 -28.88651 -25.86197 -24.36541 -23.80104 -21.81936 -20.93582 -19.93445 -19.42045 -17.94045 -17.32299 -16.95958 -16.11022 -15.81431 -15.24279 -15.01784 -14.97170 -14.10907 -13.97981 -13.79409 -13.50199 -12.98937 -12.77798 -12.55331 -12.11399 -11.89709 -11.83278 -11.34298 -11.23538 -11.10088 -11.05170 -10.75851 -10.18624 -10.09041 -9.88726 -9.59007 -9.45748 -9.16429 -9.04011 -8.90961 -7.54873 -6.98609 -6.75052 -4.30756 0.13432 0.96414 2.29081 2.30194 2.72259 3.05946 3.07038 3.10807 3.11049 3.34668 3.51491 3.78857 3.89586 3.92507 4.12001 4.47644 4.62825 4.77219 4.84719 5.02195 5.43150 5.50341 5.68046 5.72758 5.82605 6.21601 6.27776 6.41098 6.77461 6.92616 7.03151 7.06207 7.17205 7.27276 7.47677 7.59018 7.73977 7.86776 8.02179 8.26424 8.29485 8.57470 8.71405 8.86772 8.98603 10.16295 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.055026 B = 0.002636 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.728719 B =10620.456132 C =10898.011043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.150 4.150 3 C -0.031 4.031 4 C -0.058 4.058 5 C -0.112 4.112 6 C 0.101 3.899 7 C 0.546 3.454 8 O -0.524 6.524 9 N -0.622 5.622 10 C -0.013 4.013 11 C -0.073 4.073 12 C -0.216 4.216 13 C 0.107 3.893 14 C -0.455 4.455 15 H 0.079 0.921 16 C 0.074 3.926 17 N -0.791 5.791 18 Si 0.910 3.090 19 H -0.263 1.263 20 H -0.278 1.278 21 H -0.265 1.265 22 C -0.154 4.154 23 C -0.108 4.108 24 N -0.457 5.457 25 C 0.125 3.875 26 H 0.227 0.773 27 H 0.145 0.855 28 H 0.156 0.844 29 H 0.406 0.594 30 H 0.101 0.899 31 H 0.096 0.904 32 H 0.282 0.718 33 H 0.122 0.878 34 H 0.092 0.908 35 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.171 0.421 2.179 19.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.151 4.151 3 C -0.034 4.034 4 C -0.084 4.084 5 C -0.133 4.133 6 C -0.037 4.037 7 C 0.331 3.669 8 O -0.401 6.401 9 N -0.263 5.263 10 C -0.105 4.105 11 C -0.093 4.093 12 C -0.236 4.236 13 C 0.104 3.896 14 C -0.485 4.485 15 H 0.097 0.903 16 C -0.144 4.144 17 N -0.416 5.416 18 Si 0.735 3.265 19 H -0.188 1.188 20 H -0.203 1.203 21 H -0.190 1.190 22 C -0.174 4.174 23 C -0.128 4.128 24 N -0.167 5.167 25 C -0.035 4.035 26 H 0.244 0.756 27 H 0.163 0.837 28 H 0.173 0.827 29 H 0.241 0.759 30 H 0.119 0.881 31 H 0.114 0.886 32 H 0.093 0.907 33 H 0.140 0.860 34 H 0.110 0.890 35 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -18.122 0.418 1.904 18.226 hybrid contribution -0.236 0.213 0.002 0.318 sum -18.357 0.631 1.906 18.467 Atomic orbital electron populations 1.24930 0.95724 0.98611 0.98607 1.19699 0.91574 1.01944 1.01883 1.17144 0.87959 0.97225 1.01060 1.21660 0.93527 0.97198 0.96004 1.22095 0.94347 0.98946 0.97929 1.21560 0.94957 0.91646 0.95552 1.17770 0.85172 0.82586 0.81362 1.90806 1.65262 1.37745 1.46256 1.42810 1.06743 1.25539 1.51252 1.17166 0.80371 1.16181 0.96814 1.20243 0.94455 0.99329 0.95297 1.20646 0.93045 1.09214 1.00672 1.17681 0.93332 0.87566 0.91005 1.19547 0.91648 1.43665 0.93604 0.90310 1.25949 1.00988 0.92549 0.94951 1.69834 1.38634 1.32243 1.00872 0.86332 0.81561 0.80456 0.78175 1.18789 1.20343 1.18972 1.20902 0.91673 1.04491 1.00293 1.20238 0.94873 1.02743 0.94958 1.67631 1.08175 1.24964 1.15975 1.22941 0.89119 0.96389 0.95076 0.75648 0.83742 0.82657 0.75899 0.88092 0.88588 0.90731 0.86008 0.88994 0.81681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.08 19.25 29.55 0.57 -0.51 16 2 C -0.15 -1.35 13.28 -38.83 -0.52 -1.87 16 3 C -0.03 -0.32 5.75 -106.67 -0.61 -0.94 16 4 C -0.06 -0.58 9.89 -38.94 -0.39 -0.97 16 5 C -0.11 -1.39 9.61 -39.11 -0.38 -1.77 16 6 C 0.10 1.51 6.75 -82.98 -0.56 0.95 16 7 C 0.55 10.31 7.52 -12.30 -0.09 10.21 16 8 O -0.52 -11.48 14.03 5.31 0.07 -11.41 16 9 N -0.62 -11.97 5.28 -10.58 -0.06 -12.02 16 10 C -0.01 -0.30 6.27 -83.61 -0.52 -0.82 16 11 C -0.07 -1.79 8.57 -39.78 -0.34 -2.13 16 12 C -0.22 -5.50 9.74 -39.26 -0.38 -5.89 16 13 C 0.11 2.87 5.57 -106.79 -0.59 2.28 16 14 C -0.46 -12.05 9.04 -37.86 -0.34 -12.40 16 15 H 0.08 1.99 7.90 -52.49 -0.41 1.58 16 16 C 0.07 1.84 5.15 -17.34 -0.09 1.75 16 17 N -0.79 -20.36 10.95 55.55 0.61 -19.75 16 18 Si 0.91 18.54 29.59 -169.99 -5.03 13.51 16 19 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 20 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 21 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 22 C -0.15 -3.97 8.63 -39.26 -0.34 -4.31 16 23 C -0.11 -2.52 9.90 -39.78 -0.39 -2.92 16 24 N -0.46 -6.15 9.52 -9.50 -0.09 -6.24 16 25 C 0.13 1.35 10.92 -17.15 -0.19 1.16 16 26 H 0.23 0.60 7.80 -54.09 -0.42 0.18 16 27 H 0.14 1.04 8.06 -52.48 -0.42 0.62 16 28 H 0.16 1.85 7.63 -52.49 -0.40 1.45 16 29 H 0.41 6.74 8.14 -40.81 -0.33 6.41 16 30 H 0.10 2.39 6.47 -52.48 -0.34 2.05 16 31 H 0.10 2.31 8.06 -52.49 -0.42 1.89 16 32 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 33 H 0.12 3.21 6.18 -52.49 -0.32 2.88 16 34 H 0.09 1.89 8.06 -52.49 -0.42 1.47 16 35 H 0.17 1.31 8.06 -52.49 -0.42 0.89 16 LS Contribution 321.14 15.07 4.84 4.84 Total: -1.00 -30.64 321.14 -7.88 -38.52 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: -3.06 Total: 10.72 kcal Atomic # 6 Polarization: -12.99 SS G_CDS: -5.17 Total: -18.16 kcal Atomic # 7 Polarization: -38.48 SS G_CDS: 0.46 Total: -38.02 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: 0.07 Total: -11.41 kcal Atomic # 14 Polarization: 18.54 SS G_CDS: -5.03 Total: 13.51 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.64 -7.88 -38.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728805513.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.663 kcal (2) G-P(sol) polarization free energy of solvation -30.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds