Wall clock time and date at job start Tue Mar 31 2020 06:39:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.40034 * 120.45391 * 251.40525 * 3 2 1 5 5 C 1.38149 * 118.38181 * 180.02562 * 4 3 2 6 6 C 1.39626 * 119.19882 * 359.97438 * 5 4 3 7 7 C 1.47767 * 119.57744 * 180.02562 * 6 5 4 8 8 O 1.21588 * 119.99849 * 354.11692 * 7 6 5 9 9 N 1.34778 * 120.00085 * 174.11164 * 7 6 5 10 10 C 1.36811 * 119.99725 * 3.29432 * 9 7 6 11 11 H 1.08004 * 119.99413 * 304.45159 * 10 9 7 12 12 C 1.39039 * 120.00203 * 124.46009 * 10 9 7 13 13 N 1.31332 * 120.00061 * 181.98476 * 12 10 9 14 14 Si 1.86797 * 120.00289 * 1.98210 * 12 10 9 15 15 H 1.48501 * 109.47178 * 95.19069 * 14 12 10 16 16 H 1.48496 * 109.47319 * 215.19301 * 14 12 10 17 17 H 1.48503 * 109.47016 * 335.19612 * 14 12 10 18 18 C 1.39699 * 120.00094 * 183.28146 * 9 7 6 19 19 C 1.38987 * 120.07933 * 351.68661 * 18 9 7 20 20 C 1.38072 * 119.91450 * 179.76561 * 19 18 9 21 21 C 1.38309 * 120.08517 * 0.50393 * 20 19 18 22 22 C 1.38321 * 120.15614 * 359.74506 * 21 20 19 23 23 C 1.38069 * 120.08246 * 359.97438 * 22 21 20 24 24 N 1.32908 * 120.84418 * 0.02562 * 6 5 4 25 25 C 1.31295 * 121.77056 * 0.02562 * 24 6 5 26 26 H 4.52959 * 13.94945 * 359.97438 * 4 2 1 27 27 H 1.08002 * 120.81231 * 0.02562 * 4 3 2 28 28 H 1.08000 * 120.40259 * 179.73212 * 5 4 3 29 29 H 0.97003 * 120.00631 * 185.00036 * 13 12 10 30 30 H 1.08000 * 120.03957 * 359.97438 * 19 18 9 31 31 H 1.08003 * 119.95977 * 180.26618 * 20 19 18 32 32 H 1.07999 * 119.92304 * 179.72568 * 21 20 19 33 33 H 1.07999 * 119.95553 * 179.97438 * 22 21 20 34 34 H 1.08000 * 120.04410 * 179.97438 * 23 22 21 35 35 H 1.07999 * 119.64063 * 180.02562 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3156 0.3859 1.1441 5 6 4.6962 0.3711 1.0966 6 6 5.3330 -0.0249 -0.0812 7 6 6.8093 -0.0444 -0.1411 8 8 7.4613 0.3836 0.7917 9 7 7.4332 -0.5367 -1.2296 10 6 6.7010 -0.9560 -2.3065 11 1 5.9301 -1.7015 -2.1780 12 6 6.9493 -0.4227 -3.5663 13 7 6.2205 -0.7964 -4.5929 14 14 8.3195 0.8254 -3.7987 15 1 9.5531 0.1291 -4.2445 16 1 7.9144 1.8201 -4.8242 17 1 8.5805 1.5193 -2.5119 18 6 8.8275 -0.6185 -1.2584 19 6 9.5804 -0.0377 -0.2447 20 6 10.9581 -0.1248 -0.2740 21 6 11.5894 -0.7800 -1.3157 22 6 10.8435 -1.3548 -2.3289 23 6 9.4652 -1.2767 -2.3033 24 7 4.6283 -0.3845 -1.1491 25 6 3.3153 -0.3828 -1.1437 26 1 -1.0500 0.0003 -0.0005 27 1 2.7963 0.6872 2.0419 28 1 5.2759 0.6660 1.9588 29 1 6.4392 -0.4806 -5.4837 30 1 9.0884 0.4782 0.5665 31 1 11.5437 0.3226 0.5155 32 1 12.6673 -0.8427 -1.3383 33 1 11.3398 -1.8652 -3.1409 34 1 8.8834 -1.7253 -3.0949 35 1 2.7771 -0.6820 -2.0309 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000728820697.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:54 Heat of formation + Delta-G solvation = 129.963852 kcal Electronic energy + Delta-G solvation = -22276.073999 eV Core-core repulsion = 19014.603608 eV Total energy + Delta-G solvation = -3261.470391 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.095 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.49881 -39.32705 -37.43192 -35.26565 -34.07337 -32.14180 -31.83689 -30.60857 -30.14652 -28.90230 -25.46003 -24.55863 -23.23796 -22.06332 -21.43908 -19.85114 -18.90775 -18.38386 -16.88718 -16.22123 -15.80928 -15.53128 -15.39627 -14.89378 -14.54112 -13.98867 -13.82134 -13.41617 -13.39855 -12.91858 -12.88966 -12.59956 -12.37425 -12.25285 -11.96858 -11.36980 -11.33864 -11.04214 -10.79860 -10.60448 -10.32470 -10.08082 -9.55308 -9.45434 -8.92446 -8.81068 -8.49504 -8.40964 -8.07104 -7.07042 -6.39060 -4.26438 0.67057 1.60925 2.01556 2.12936 2.72484 2.95582 3.19435 3.28525 3.37909 3.64434 3.90894 4.15138 4.24904 4.41217 4.61970 4.78067 5.02137 5.03935 5.22554 5.41246 5.50652 5.58132 5.66016 5.85935 5.93158 6.08904 6.23790 6.25493 6.31733 6.36368 6.53079 6.75350 6.90856 7.13227 7.22313 7.25117 7.34502 7.49426 7.77112 7.98231 8.31141 8.44287 8.83201 9.11299 9.33421 10.61212 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.021164 B = 0.005590 C = 0.004674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.698113 B = 5007.478426 C = 5989.467846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.134 4.134 3 C -0.047 4.047 4 C -0.069 4.069 5 C -0.126 4.126 6 C 0.109 3.891 7 C 0.532 3.468 8 O -0.557 6.557 9 N -0.381 5.381 10 C -0.323 4.323 11 H 0.128 0.872 12 C 0.082 3.918 13 N -0.852 5.852 14 Si 0.861 3.139 15 H -0.256 1.256 16 H -0.291 1.291 17 H -0.260 1.260 18 C 0.152 3.848 19 C -0.180 4.180 20 C -0.111 4.111 21 C -0.167 4.167 22 C -0.107 4.107 23 C -0.152 4.152 24 N -0.382 5.382 25 C 0.118 3.882 26 H 0.224 0.776 27 H 0.136 0.864 28 H 0.147 0.853 29 H 0.275 0.725 30 H 0.179 0.821 31 H 0.113 0.887 32 H 0.109 0.891 33 H 0.115 0.885 34 H 0.141 0.859 35 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.410 0.937 6.646 7.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.135 4.135 3 C -0.050 4.050 4 C -0.095 4.095 5 C -0.147 4.147 6 C -0.029 4.029 7 C 0.324 3.676 8 O -0.442 6.442 9 N -0.088 5.088 10 C -0.451 4.451 11 H 0.145 0.855 12 C -0.127 4.127 13 N -0.486 5.486 14 Si 0.687 3.313 15 H -0.181 1.181 16 H -0.218 1.218 17 H -0.184 1.184 18 C 0.057 3.943 19 C -0.199 4.199 20 C -0.129 4.129 21 C -0.186 4.186 22 C -0.126 4.126 23 C -0.172 4.172 24 N -0.091 5.091 25 C -0.042 4.042 26 H 0.240 0.760 27 H 0.154 0.846 28 H 0.164 0.836 29 H 0.086 0.914 30 H 0.195 0.805 31 H 0.131 0.869 32 H 0.127 0.873 33 H 0.133 0.867 34 H 0.159 0.841 35 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -2.754 0.944 6.130 6.786 hybrid contribution -0.052 0.848 0.165 0.866 sum -2.806 1.792 6.295 7.121 Atomic orbital electron populations 1.24797 0.95639 1.00006 0.99801 1.19898 0.91738 1.00909 1.00980 1.17313 0.87603 1.03511 0.96537 1.21443 0.93492 0.97175 0.97369 1.21999 0.94271 0.99240 0.99156 1.21240 0.94553 0.97201 0.89895 1.18389 0.86191 0.79325 0.83680 1.90313 1.64343 1.49814 1.39686 1.41329 1.02606 1.49673 1.15206 1.19293 1.17168 1.24205 0.84440 0.85491 1.25384 0.96203 0.95384 0.95735 1.69592 1.36221 1.43282 0.99547 0.87157 0.82699 0.82072 0.79350 1.18100 1.21821 1.18429 1.18507 0.84471 0.96263 0.95105 1.22769 0.93784 1.01995 1.01359 1.21018 0.94550 0.99409 0.97968 1.20951 0.98881 1.02555 0.96245 1.20837 0.93412 0.99972 0.98357 1.21083 0.94617 1.01766 0.99774 1.69042 1.05835 1.08810 1.25383 1.23424 0.90416 0.94221 0.96188 0.75974 0.84577 0.83555 0.91401 0.80455 0.86860 0.87265 0.86732 0.84102 0.82221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.02 19.25 29.55 0.57 -1.45 16 2 C -0.13 -1.84 13.27 -38.83 -0.52 -2.36 16 3 C -0.05 -0.73 5.75 -106.66 -0.61 -1.34 16 4 C -0.07 -1.00 9.89 -38.94 -0.39 -1.39 16 5 C -0.13 -2.11 9.61 -39.10 -0.38 -2.48 16 6 C 0.11 2.27 6.66 -82.99 -0.55 1.71 16 7 C 0.53 12.39 7.55 -12.36 -0.09 12.30 16 8 O -0.56 -12.90 12.73 5.29 0.07 -12.83 16 9 N -0.38 -9.38 2.28 -60.01 -0.14 -9.52 16 10 C -0.32 -8.31 6.71 -15.03 -0.10 -8.41 16 11 H 0.13 3.45 6.78 -52.48 -0.36 3.09 16 12 C 0.08 2.14 4.63 -17.47 -0.08 2.06 16 13 N -0.85 -22.91 13.95 55.50 0.77 -22.14 16 14 Si 0.86 21.09 23.90 -169.99 -4.06 17.03 16 15 H -0.26 -5.98 6.25 56.52 0.35 -5.63 16 16 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 17 H -0.26 -6.73 6.49 56.52 0.37 -6.36 16 18 C 0.15 3.59 4.14 -83.72 -0.35 3.25 16 19 C -0.18 -3.94 9.03 -39.36 -0.36 -4.30 16 20 C -0.11 -2.07 10.04 -39.62 -0.40 -2.47 16 21 C -0.17 -2.98 10.04 -39.52 -0.40 -3.38 16 22 C -0.11 -2.06 9.83 -39.61 -0.39 -2.45 16 23 C -0.15 -3.40 5.64 -39.37 -0.22 -3.62 16 24 N -0.38 -8.13 6.55 -9.50 -0.06 -8.19 16 25 C 0.12 2.10 10.91 -17.15 -0.19 1.92 16 26 H 0.22 1.45 7.80 -54.09 -0.42 1.03 16 27 H 0.14 1.53 8.06 -52.49 -0.42 1.10 16 28 H 0.15 2.23 7.64 -52.49 -0.40 1.83 16 29 H 0.28 7.00 8.31 -40.82 -0.34 6.66 16 30 H 0.18 4.00 4.57 -56.04 -0.26 3.75 16 31 H 0.11 1.76 8.06 -52.48 -0.42 1.34 16 32 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 33 H 0.11 1.89 8.06 -52.49 -0.42 1.47 16 34 H 0.14 3.30 5.72 -52.49 -0.30 3.00 16 35 H 0.16 2.61 8.06 -52.49 -0.42 2.19 16 LS Contribution 303.34 15.07 4.57 4.57 Total: -1.00 -29.29 303.34 -6.36 -35.66 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -3.07 Total: 7.84 kcal Atomic # 6 Polarization: -7.98 SS G_CDS: -4.44 Total: -12.43 kcal Atomic # 7 Polarization: -40.42 SS G_CDS: 0.58 Total: -39.85 kcal Atomic # 8 Polarization: -12.90 SS G_CDS: 0.07 Total: -12.83 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.06 Total: 17.03 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -29.29 -6.36 -35.66 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728820697.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.620 kcal (2) G-P(sol) polarization free energy of solvation -29.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds