Wall clock time and date at job start Tue Mar 31 2020 06:39:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39735 * 119.57769 * 322.96130 * 3 2 1 5 5 C 1.36946 * 119.34229 * 180.02562 * 4 3 2 6 6 C 1.40305 * 118.50908 * 0.02562 * 5 4 3 7 7 C 1.47494 * 120.44628 * 180.02562 * 6 5 4 8 8 O 1.21613 * 119.99880 * 22.06669 * 7 6 5 9 9 N 1.34776 * 120.00155 * 202.06933 * 7 6 5 10 10 C 1.36893 * 119.99774 * 9.32531 * 9 7 6 11 11 H 1.07994 * 120.00010 * 46.37308 * 10 9 7 12 12 C 1.38999 * 119.99750 * 226.36789 * 10 9 7 13 13 N 1.31370 * 120.00138 * 349.94675 * 12 10 9 14 14 Si 1.86800 * 119.99777 * 169.94855 * 12 10 9 15 15 H 1.48499 * 109.47071 * 59.99881 * 14 12 10 16 16 H 1.48498 * 109.47075 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47103 * 299.99892 * 14 12 10 18 18 C 1.39704 * 120.00207 * 189.32424 * 9 7 6 19 19 C 1.38982 * 120.08106 * 271.41584 * 18 9 7 20 20 C 1.38077 * 119.91963 * 179.78839 * 19 18 9 21 21 C 1.38314 * 120.07758 * 0.46304 * 20 19 18 22 22 C 1.38311 * 120.16229 * 359.78730 * 21 20 19 23 23 C 1.38074 * 120.07942 * 359.97438 * 22 21 20 24 24 C 1.39780 * 119.11139 * 359.97438 * 6 5 4 25 25 N 1.31500 * 120.56742 * 359.97438 * 24 6 5 26 26 H 4.51242 * 14.18020 * 0.02562 * 4 2 1 27 27 H 1.08000 * 120.32638 * 0.05532 * 4 3 2 28 28 H 1.07999 * 120.74424 * 180.02562 * 5 4 3 29 29 H 0.96996 * 119.99797 * 184.90239 * 13 12 10 30 30 H 1.08000 * 120.03883 * 359.97438 * 19 18 9 31 31 H 1.07997 * 119.96045 * 180.24607 * 20 19 18 32 32 H 1.08007 * 119.91671 * 179.76254 * 21 20 19 33 33 H 1.07995 * 119.95945 * 179.97438 * 22 21 20 34 34 H 1.08002 * 120.04291 * 179.97438 * 23 22 21 35 35 H 1.07997 * 119.71501 * 179.97438 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.2962 -0.9691 0.7320 5 6 4.6656 -0.9637 0.7291 6 6 5.3298 0.0236 -0.0144 7 6 6.8036 0.0689 -0.0480 8 8 7.4487 -0.9295 0.2089 9 7 7.4355 1.2168 -0.3634 10 6 6.7260 2.3831 -0.4653 11 1 6.0099 2.6479 0.2986 12 6 6.9272 3.2263 -1.5517 13 7 7.9287 3.0106 -2.3741 14 14 5.7734 4.6664 -1.8425 15 1 5.8125 5.5766 -0.6698 16 1 6.2005 5.4053 -3.0577 17 1 4.3896 4.1617 -2.0315 18 6 8.8147 1.2165 -0.5864 19 6 9.6920 1.4040 0.4751 20 6 11.0545 1.3987 0.2515 21 6 11.5464 1.2168 -1.0283 22 6 10.6761 1.0351 -2.0879 23 6 9.3125 1.0343 -1.8712 24 6 4.5759 0.9631 -0.7236 25 7 3.2618 0.9240 -0.6966 26 1 -1.0500 -0.0010 0.0001 27 1 2.7549 -1.7157 1.2941 28 1 5.2218 -1.7028 1.2865 29 1 8.1120 3.6386 -3.0903 30 1 9.3085 1.5506 1.4740 31 1 11.7370 1.5404 1.0765 32 1 12.6126 1.2170 -1.2008 33 1 11.0637 0.8938 -3.0860 34 1 8.6335 0.8928 -2.6991 35 1 5.0771 1.7275 -1.2988 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000728820950.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:27 Heat of formation + Delta-G solvation = 108.723727 kcal Electronic energy + Delta-G solvation = -22169.027203 eV Core-core repulsion = 18906.635771 eV Total energy + Delta-G solvation = -3262.391432 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.095 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.19964 -38.97511 -37.23901 -35.05533 -33.62672 -32.09628 -31.96489 -30.60166 -29.90401 -28.64101 -25.47936 -24.53143 -22.96640 -21.67578 -21.56439 -19.77217 -19.07116 -18.10166 -16.86266 -16.02053 -15.76519 -15.64441 -14.89459 -14.75081 -14.36167 -13.89009 -13.73185 -13.53332 -13.09751 -12.90931 -12.71025 -12.49425 -12.07428 -11.80468 -11.60890 -11.35743 -11.06231 -10.96549 -10.73615 -10.70123 -10.48020 -10.24233 -9.59847 -9.49698 -9.10816 -8.78441 -8.35946 -8.02186 -7.88111 -7.71547 -6.39403 -4.47924 0.84328 1.70430 2.33501 2.48325 2.74855 2.93101 3.05330 3.11184 3.15915 3.80731 3.87770 4.12638 4.37537 4.49301 4.72029 4.84598 5.14650 5.37458 5.44974 5.48359 5.67408 5.74357 5.85456 5.96445 6.00209 6.25729 6.37655 6.41598 6.57619 6.65147 6.77080 7.01244 7.07460 7.20834 7.27373 7.43467 7.52299 7.64451 7.73992 7.89422 8.25110 8.32534 8.73159 9.10488 9.57747 10.34385 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.017355 B = 0.005779 C = 0.004594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.987392 B = 4844.080996 C = 6092.884333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.127 4.127 3 C 0.213 3.787 4 C -0.163 4.163 5 C -0.038 4.038 6 C -0.141 4.141 7 C 0.524 3.476 8 O -0.581 6.581 9 N -0.406 5.406 10 C -0.356 4.356 11 H 0.097 0.903 12 C 0.055 3.945 13 N -0.841 5.841 14 Si 0.906 3.094 15 H -0.269 1.269 16 H -0.278 1.278 17 H -0.255 1.255 18 C 0.180 3.820 19 C -0.116 4.116 20 C -0.142 4.142 21 C -0.133 4.133 22 C -0.145 4.145 23 C -0.019 4.019 24 C 0.145 3.855 25 N -0.481 5.481 26 H 0.226 0.774 27 H 0.134 0.866 28 H 0.143 0.857 29 H 0.277 0.723 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.105 0.895 33 H 0.108 0.892 34 H 0.123 0.877 35 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.559 -2.405 2.116 5.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.128 4.128 3 C 0.078 3.922 4 C -0.183 4.183 5 C -0.064 4.064 6 C -0.146 4.146 7 C 0.314 3.686 8 O -0.465 6.465 9 N -0.122 5.122 10 C -0.482 4.482 11 H 0.115 0.885 12 C -0.155 4.155 13 N -0.473 5.473 14 Si 0.730 3.270 15 H -0.193 1.193 16 H -0.203 1.203 17 H -0.180 1.180 18 C 0.091 3.909 19 C -0.136 4.136 20 C -0.161 4.161 21 C -0.151 4.151 22 C -0.164 4.164 23 C -0.039 4.039 24 C -0.013 4.013 25 N -0.190 5.190 26 H 0.243 0.757 27 H 0.152 0.848 28 H 0.160 0.840 29 H 0.089 0.911 30 H 0.125 0.875 31 H 0.125 0.875 32 H 0.123 0.877 33 H 0.126 0.874 34 H 0.141 0.859 35 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -4.602 -2.193 1.535 5.324 hybrid contribution -0.124 0.485 0.348 0.610 sum -4.727 -1.709 1.884 5.367 Atomic orbital electron populations 1.24789 0.95518 0.99262 0.99113 1.19543 0.91241 1.00922 1.01098 1.16843 0.87871 0.92527 0.94967 1.21540 0.94561 1.00291 1.01882 1.21342 0.93464 0.96443 0.95180 1.21170 0.95652 0.97460 1.00311 1.18108 0.86313 0.82987 0.81210 1.90682 1.67280 1.34863 1.53680 1.40818 1.03576 1.06484 1.61310 1.19378 1.22891 0.98985 1.06958 0.88515 1.25675 0.96335 0.99088 0.94397 1.69816 1.25256 1.35741 1.16534 0.86291 0.81322 0.80725 0.78615 1.19341 1.20321 1.17956 1.17528 0.83786 0.97043 0.92530 1.21120 0.93114 1.01083 0.98288 1.20664 0.94616 1.04269 0.96530 1.20849 0.98395 1.02657 0.93228 1.20800 0.93463 1.04153 0.97958 1.21074 0.94092 0.92651 0.96106 1.24795 0.87105 0.95825 0.93574 1.68077 1.10723 1.22063 1.18109 0.75693 0.84781 0.83961 0.91121 0.87492 0.87470 0.87679 0.87439 0.85936 0.77720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.99 19.25 29.55 0.57 -1.42 16 2 C -0.13 -1.97 13.43 -38.84 -0.52 -2.49 16 3 C 0.21 3.79 6.59 -84.89 -0.56 3.23 16 4 C -0.16 -2.58 9.72 -39.49 -0.38 -2.97 16 5 C -0.04 -0.68 9.65 -39.27 -0.38 -1.05 16 6 C -0.14 -2.95 5.65 -104.77 -0.59 -3.55 16 7 C 0.52 12.49 7.42 -12.49 -0.09 12.39 16 8 O -0.58 -14.95 16.61 5.27 0.09 -14.86 16 9 N -0.41 -9.81 2.59 -60.09 -0.16 -9.97 16 10 C -0.36 -8.40 5.79 -15.01 -0.09 -8.48 16 11 H 0.10 2.24 7.13 -52.49 -0.37 1.87 16 12 C 0.05 1.27 4.99 -17.47 -0.09 1.19 16 13 N -0.84 -20.11 9.18 55.50 0.51 -19.60 16 14 Si 0.91 18.27 29.03 -169.99 -4.93 13.34 16 15 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 16 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 17 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 18 C 0.18 4.32 3.71 -83.72 -0.31 4.01 16 19 C -0.12 -2.58 9.97 -39.36 -0.39 -2.98 16 20 C -0.14 -2.74 10.04 -39.61 -0.40 -3.14 16 21 C -0.13 -2.47 10.04 -39.53 -0.40 -2.87 16 22 C -0.14 -2.88 10.04 -39.61 -0.40 -3.27 16 23 C -0.02 -0.44 7.39 -39.37 -0.29 -0.73 16 24 C 0.14 3.03 9.33 -17.12 -0.16 2.87 16 25 N -0.48 -9.70 10.27 -10.74 -0.11 -9.81 16 26 H 0.23 1.57 7.80 -54.09 -0.42 1.15 16 27 H 0.13 1.67 8.06 -52.49 -0.42 1.24 16 28 H 0.14 2.34 7.87 -52.49 -0.41 1.92 16 29 H 0.28 6.35 8.31 -40.82 -0.34 6.01 16 30 H 0.11 2.30 8.06 -52.49 -0.42 1.87 16 31 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 32 H 0.11 1.61 8.06 -52.48 -0.42 1.18 16 33 H 0.11 1.85 8.06 -52.49 -0.42 1.43 16 34 H 0.12 2.92 7.27 -52.49 -0.38 2.54 16 35 H 0.21 4.53 4.18 -52.49 -0.22 4.31 16 LS Contribution 314.90 15.07 4.75 4.75 Total: -1.00 -28.18 314.90 -7.40 -35.58 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -3.06 Total: 9.85 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: -4.48 Total: -9.28 kcal Atomic # 7 Polarization: -39.62 SS G_CDS: 0.24 Total: -39.38 kcal Atomic # 8 Polarization: -14.95 SS G_CDS: 0.09 Total: -14.86 kcal Atomic # 14 Polarization: 18.27 SS G_CDS: -4.93 Total: 13.34 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -28.18 -7.40 -35.58 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728820950.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.304 kcal (2) G-P(sol) polarization free energy of solvation -28.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds